MELO3C035645.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035645.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	UPF0057 membrane protein At4g30660
Location	chr12 : 15682289 .. 15683176 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATATTTTGCAAAATCAAATCCAAATTCTGACGGCCTGTTTGGGGTTAGGGTTATTACTGTGGGCTTAGGTTAGTCCAATCCTAACCCCCATTTGGGCCCAAGATTAAGGAAACCCTAATTTAGAGTTTCCTTAATCCCGATTTTAGCCTCAAACACCTCCCCCTCAATCCATCGATTTTCCTCCTCCATTTGCGTCTTCAACCTGTGTTAACCCTTCACACTGAATCCGTCTTCAACCCCTTCGATTTTTCATTCTTTCGTTCTGTGTTCTCTCCCTCATCTCCAATTACCATTTTGGGTTTTGCCTCCAAACGTGTTTTGTTGAAGGCAACCCTCTAATTTTCTCCTTGCCGCTTGACGTTCCATTATTGTGGCTGGGTGTTTCGTTTGCTGTTTCGTCATTTACTTCACTAATAAGACAGACACTTCACACCGTTATCTGCTAATGGTTGCCAATCAAGCTTAGTAGGGAGGTATTAGACTTTTTTTAATCCAATTTTTTTTAGCCGATGATGAGTTTCCATTCCTTTGAATACAAACTAATTTTGTTTAGGAATATATGATATGTTTGCATTTTGTTCTCTGTTATAATAATTTACTTTCATTATTGCCATGATTTCCCACAGTTTGTGTTCATGTTTTTTGTTTTAATTTGCAGGTGGAATTTTGTCTGTGTTTGATTCTGACTCTTCTCGGCTACGTTCCAGGGATCATTTACGTAGTCTACGCCATTGCGCTCGTGGATCATGACCAGTTCTTTGATGAGTACAGGTGTCCTCTCTATTCGTCGGCGTCGACGGATTAAAACAAGTTTGAATAATTTCTTGACTATGTGTTTTTCACTTATGGATCAATAATTTGTTGGTTCTTATGTAGTTTTT

mRNA sequence

ATGTTTGATATTTTGCAAAATCAAATCCAAATTCTGACGGCCTGTTTGGGGTTAGGCCTCAAACACCTCCCCCTCAATCCATCGATTTTCCTCCTCCATTTGCGTCTTCAACCTGTGTTAACCCTTCACACTGAATCCGTCTTCAACCCCTTCGATTTTTCATTCTTTCGTTCTGTGTTCTCTCCCTCATCTCCAATTACCATTTTGGGTTTTGCCTCCAAACGTGTGGAATTTTGTCTGTGTTTGATTCTGACTCTTCTCGGCTACGTTCCAGGGATCATTTACGTAGTCTACGCCATTGCGCTCGTGGATCATGACCAGTTCTTTGATGAGTACAGGTGTCCTCTCTATTCGTCGGCGTCGACGGATTAAAACAAGTTTGAATAATTTCTTGACTATGTGTTTTTCACTTATGGATCAATAATTTGTTGGTTCTTATGTAGTTTTT

Coding sequence (CDS)

ATGTTTGATATTTTGCAAAATCAAATCCAAATTCTGACGGCCTGTTTGGGGTTAGGCCTCAAACACCTCCCCCTCAATCCATCGATTTTCCTCCTCCATTTGCGTCTTCAACCTGTGTTAACCCTTCACACTGAATCCGTCTTCAACCCCTTCGATTTTTCATTCTTTCGTTCTGTGTTCTCTCCCTCATCTCCAATTACCATTTTGGGTTTTGCCTCCAAACGTGTGGAATTTTGTCTGTGTTTGATTCTGACTCTTCTCGGCTACGTTCCAGGGATCATTTACGTAGTCTACGCCATTGCGCTCGTGGATCATGACCAGTTCTTTGATGAGTACAGGTGTCCTCTCTATTCGTCGGCGTCGACGGATTAA

Protein sequence

MFDILQNQIQILTACLGLGLKHLPLNPSIFLLHLRLQPVLTLHTESVFNPFDFSFFRSVFSPSSPITILGFASKRVEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSASTD

Homology

[Close]

BLAST of MELO3C035645.2 vs. NCBI nr
Match: XP_008452728.1 (PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 45/55 (81.82%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 69  LGFASKRVEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSASTD 124
           L F    VEFCLCLILTLLGYVPGIIY VYAIA VD DQFFDEYR PLYSSAS D
Sbjct: 24  LKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSASAD 78

[Close]

BLAST of MELO3C035645.2 vs. NCBI nr
Match: XP_011648896.1 (PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] >KGN61055.1 hypothetical protein Csa_2G036040 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 69  LGFASKRVEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSASTD 124
           L F    VEFCLCLILTLLGYVPGIIY VYAIA VD DQFFDEYR PLYSS S +
Sbjct: 24  LKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSVSAE 78

[Close]

BLAST of MELO3C035645.2 vs. NCBI nr
Match: XP_022946545.1 (UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF0057 membrane protein At2g24040-like [Cucurbita maxima] >XP_023523032.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo] >XP_023546587.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 7.6e-12
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSAS 122
           VEFCLCLILTLLGY+PGIIY +YAI  VD DQFFDEYR PLYS AS
Sbjct: 31  VEFCLCLILTLLGYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQAS 76

[Close]

BLAST of MELO3C035645.2 vs. NCBI nr
Match: XP_022158160.1 (UPF0057 membrane protein At2g24040-like [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-11
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSAS 122
           VEFCLCLILTLLGYVPGIIY +YAI  VD DQFFDEYR PLY+  S
Sbjct: 31  VEFCLCLILTLLGYVPGIIYALYAIVFVDRDQFFDEYRRPLYAPVS 76

[Close]

BLAST of MELO3C035645.2 vs. NCBI nr
Match: XP_022938010.1 (UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022938011.1 UPF0057 membrane protein At4g30660-like [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSAST 123
           VEFCLCLILTLLGY+PGIIY +Y+I  VD D FFDEYR PLYS   T
Sbjct: 31  VEFCLCLILTLLGYIPGIIYALYSIVFVDRDHFFDEYRRPLYSPVPT 77

[Close]

BLAST of MELO3C035645.2 vs. TAIR10
Match: AT4G28088.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 77  EFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSAS 122
           EF +CLILTLLGYVPGIIY +YAI  VD DQFFDEYR PL+ + S
Sbjct: 32  EFMICLILTLLGYVPGIIYALYAIVYVDRDQFFDEYRRPLFYAQS 76

[Close]

BLAST of MELO3C035645.2 vs. TAIR10
Match: AT4G30660.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-10
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSS 120
           VEF +CL+LT+LGYVPGIIY +Y I     +++FDEYR P+YS+
Sbjct: 31  VEFLICLVLTILGYVPGIIYAIYVIVFQHREEYFDEYRRPIYSA 74

[Close]

BLAST of MELO3C035645.2 vs. TAIR10
Match: AT2G24040.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-10
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLY 118
           VEF +CLILT LGY+PGIIY +YAI  +  D++FDEYR P+Y
Sbjct: 31  VEFFICLILTCLGYLPGIIYAIYAICFLHRDEYFDEYRRPIY 72

[Close]

BLAST of MELO3C035645.2 vs. TAIR10
Match: AT4G30650.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 42.0 bits (97), Expect = 3.2e-04
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 69  LGFASKR----VEFCLCLILTLLGYVPGIIYVVYAIALVDHD 107
           LG   KR    VEF +CL+LT+LGY+PGIIY +Y I   + +
Sbjct: 20  LGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNRE 61

[Close]

BLAST of MELO3C035645.2 vs. TAIR10
Match: AT3G05880.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 40.8 bits (94), Expect = 7.1e-04
Identity = 17/25 (68.00%), Postives = 22/25 (88.00%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAI 101
           VEF +CL+LTLLGY+PGIIY +Y +
Sbjct: 28  VEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of MELO3C035645.2 vs. Swiss-Prot
Match: sp|Q9SUI0|RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-09
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSS 120
           VEF +CL+LT+LGYVPGIIY +Y I     +++FDEYR P+YS+
Sbjct: 31  VEFLICLVLTILGYVPGIIYAIYVIVFQHREEYFDEYRRPIYSA 74

[Close]

BLAST of MELO3C035645.2 vs. Swiss-Prot
Match: sp|O82232|RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.1e-09
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLY 118
           VEF +CLILT LGY+PGIIY +YAI  +  D++FDEYR P+Y
Sbjct: 31  VEFFICLILTCLGYLPGIIYAIYAICFLHRDEYFDEYRRPIY 72

[Close]

BLAST of MELO3C035645.2 vs. Swiss-Prot
Match: sp|Q9LRI7|OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-07
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 69  LGFASKRVEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEY 113
           L F    +EFC+CL+LT+LGYVPGIIY VY +  +D DQ+  EY
Sbjct: 25  LRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQYQREY 68

[Close]

BLAST of MELO3C035645.2 vs. TrEMBL
Match: tr|A0A1S3BTY7|A0A1S3BTY7_CUCME (UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103493660 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 45/55 (81.82%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 69  LGFASKRVEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSASTD 124
           L F    VEFCLCLILTLLGYVPGIIY VYAIA VD DQFFDEYR PLYSSAS D
Sbjct: 24  LKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSASAD 78

[Close]

BLAST of MELO3C035645.2 vs. TrEMBL
Match: tr|A0A0A0LGN1|A0A0A0LGN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036040 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.1e-14
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 69  LGFASKRVEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSASTD 124
           L F    VEFCLCLILTLLGYVPGIIY VYAIA VD DQFFDEYR PLYSS S +
Sbjct: 24  LKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSVSAE 78

[Close]

BLAST of MELO3C035645.2 vs. TrEMBL
Match: tr|A0A2I4EVD0|A0A2I4EVD0_9ROSI (UPF0057 membrane protein At4g30660-like OS=Juglans regia OX=51240 GN=LOC108993040 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSS 120
           VEFC+CL+LT+LGY+PGIIY +YAI  VD DQ+FDEYR PLYS+
Sbjct: 31  VEFCICLLLTILGYIPGIIYALYAIVFVDRDQYFDEYRRPLYSA 74

[Close]

BLAST of MELO3C035645.2 vs. TrEMBL
Match: tr|A0A2I4F9J0|A0A2I4F9J0_9ROSI (UPF0057 membrane protein At4g30660-like OS=Juglans regia OX=51240 GN=LOC108996740 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-10
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSA 121
           VEFC+CL+LT+LGY+PGIIY +YAI  VD DQ+FDEYR PLY+ A
Sbjct: 31  VEFCICLLLTILGYIPGIIYALYAIVFVDRDQYFDEYRRPLYAPA 75

[Close]

BLAST of MELO3C035645.2 vs. TrEMBL
Match: tr|A0A061GQV4|A0A061GQV4_THECC (Low temperature and salt responsive protein family isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_037030 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.1e-10
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 76  VEFCLCLILTLLGYVPGIIYVVYAIALVDHDQFFDEYRCPLYSSAS 122
           VEFC+CL+LT+LGYVPGIIY +YAI  VD D++FDEYR PLY S++
Sbjct: 31  VEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYYSSA 76

The following BLAST results are available for this feature:

BLAST of MELO3C035645.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452728.1	1.6e-14	81.82	PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo]	[more]
XP_011648896.1	1.4e-13	78.18	PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] >KGN61055.1...	[more]
XP_022946545.1	7.6e-12	82.61	UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF...	[more]
XP_022158160.1	3.7e-11	80.43	UPF0057 membrane protein At2g24040-like [Momordica charantia]	[more]
XP_022938010.1	1.9e-10	74.47	UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022938011.1 UPF...	[more]

BLAST of MELO3C035645.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28088.1	2.4e-12	73.33	Low temperature and salt responsive protein family	[more]
AT4G30660.1	3.9e-10	59.09	Low temperature and salt responsive protein family	[more]
AT2G24040.1	5.0e-10	64.29	Low temperature and salt responsive protein family	[more]
AT4G30650.1	3.2e-04	50.00	Low temperature and salt responsive protein family	[more]
AT3G05880.1	7.1e-04	68.00	Low temperature and salt responsive protein family	[more]

BLAST of MELO3C035645.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SUI0\|RC24_ARATH	7.0e-09	59.09	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 ...	[more]
sp\|O82232\|RC22_ARATH	9.1e-09	64.29	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 ...	[more]
sp\|Q9LRI7\|OSR8_ORYSJ	6.5e-07	56.82	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 S...	[more]

BLAST of MELO3C035645.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTY7\|A0A1S3BTY7_CUCME	1.1e-14	81.82	UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103493660 PE=4 ...	[more]
tr\|A0A0A0LGN1\|A0A0A0LGN1_CUCSA	9.1e-14	78.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036040 PE=4 SV=1	[more]
tr\|A0A2I4EVD0\|A0A2I4EVD0_9ROSI	2.7e-10	72.73	UPF0057 membrane protein At4g30660-like OS=Juglans regia OX=51240 GN=LOC10899304...	[more]
tr\|A0A2I4F9J0\|A0A2I4F9J0_9ROSI	3.6e-10	71.11	UPF0057 membrane protein At4g30660-like OS=Juglans regia OX=51240 GN=LOC10899674...	[more]
tr\|A0A061GQV4\|A0A061GQV4_THECC	6.1e-10	69.57	Low temperature and salt responsive protein family isoform 1 OS=Theobroma cacao ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR000612	PMP3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035645.2.1	MELO3C035645.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 76..100 e-value: 8.6E-7 score: 29.0
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 75..117
None	No IPR available	PANTHER	PTHR21659:SF34	LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN	coord: 75..117

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035645.2	Silver-seed gourd	carmedB1018
MELO3C035645.2	Cucumber (Chinese Long) v3	cucmedB014
MELO3C035645.2	Watermelon (97103) v2	medwmbB131
MELO3C035645.2	Wax gourd	medwgoB167
MELO3C035645.2	Wax gourd	medwgoB184
MELO3C035645.2	Cucumber (Gy14) v2	cgybmedB014
MELO3C035645.2	Cucurbita maxima (Rimu)	cmamedB213
MELO3C035645.2	Cucurbita moschata (Rifu)	cmomedB201
MELO3C035645.2	Cucurbita pepo (Zucchini)	cpemedB562
MELO3C035645.2	Wild cucumber (PI 183967)	cpimedB016
MELO3C035645.2	Cucumber (Chinese Long) v2	cumedB015
MELO3C035645.2	Bottle gourd (USVL1VR-Ls)	lsimedB190
MELO3C035645.2	Watermelon (Charleston Gray)	medwcgB132
MELO3C035645.2	Watermelon (97103) v1	medwmB166