MELO3C035641.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035641.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionzinc finger BED domain-containing protein RICESLEEPER 2-like
Locationchr12 : 15406487 .. 15409729 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGGTACGAATAATTATTGATCTTTTATTTTCTCTATAATCTCCTTTCTCTAAATTTCTATCAACACTTCCATATTGATCCTCTGAATGTTTTCACTCCTCCATTTTTTAAAAACAATTTTTTTTAGATTTCAAAGGTTTCAGATGCGAACTACGTACAGGTGGAGCATCGCTAAGGTAGGCTATCTATAAAACTTATACTAATTTTCAAACTGGGTGATTGGGTTTGTGTGCATTAAGCAAGGAGTAATTTCCATCTCAAAGGAAAACCAAGTTACATCAAAGAGGGGATGGGTCTTTCCAAGTTCTTGAAAAAGTTAACAATAATGTATATATGATTAACCTTCCAGGAGAATATTTAGTAAGTTCTACTTTCAATATTGTTCACTTGAGTCCTTTTGATGTAGGTGATGAATTTCTTGATACGAGAATGAATCCTTTCGAAGAGGGAAAAATGATAGAAGGACCAATTACAAGATCTAACATCAAAGATTTAACAATCATTCATTCTCCATGTACAGAAATGGATAGGATCAATTCACCCTTAATTTCATGAGCCACATACTAATACAAGAGACGAAGGACCACTTGGAGTATTAAATGTCAATGTTTTCTTAGTTGAAGCGGACTATGGGATAGACATTAAGCTTCCATGAATCCAACATTTTGAAGACCTCATGTTTTAGTTAATATCACATTTTTATTGAATTTTCTATTCTTTTAATTTGACAAGTTAGGGTAACTACCATTAATAAGTCAGTATTAAAGATGGTGGTTGAAAGATAGAAAACTCATTTAATGTTTTATTTTCACTTTTTGGTATTTTCATTAATAGGACAAGATCTCTAAAGGCTATATAATGCCTTTATACTTTCATTTGTAAGAACAAAACTTTTGATGAATGCAATTTGAAATGTCATTTTGGGACTTTTTCCTTATTTGTTTTTGCAATTCTTGTGATAGAATGCATGTGAGCCATTTAATCTAACCTTGATCAAGTTTTATTGTGGAGTGACTCAATTAAAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTGTTTGTAAAGTTCTAAAAGACTTTTTCAGAGGTAACAATGAAGTTTTCTACATCTGTTTTCATGACTTCAAACATATTTTTTCATGAACTTTGTTTGATCCAAGAAATAAGTTGTGATATTCGTTGTATGAGAATGTATTATTGAGTTAGATGACATTAAGCATGCAGAAAAAATTCAACAAGTATTGGGGTGTAACTACAAGTGAGAAGAGAAGACCAATTTATTATTATATGTTTCTGTAGTTCTTGACCCTAGGTACAAGCTAGCTTATGTGAATTATTGCTTTAATGAATTTTTGGATGAAGATTGTGCAAAAAAAAAAAGGACGAATAAGGTTGAAGAAGCATTTTTTTCGATCGTGTGATGATTATTATATGAGAACGTCAAAAGAAAAATATTCACAAACACAATCATGTACACCTATCAAAGGATTTGGCTTTCAAAGTCAAAGTGAAGTACCTTCAATCTCATCTAGTGGATCTTGTAAGGCACGTGCTACAATTCATGATAGATTTAAAAAAAAGTAACAAAACATGTCTAGATGATGCTAAAATAGAGGTGGTTTGTTATCTAGATGAGGCTCGTATAGAAGATGAATATTTAAATTAGCTAAATTGGTTGAAGATGAATTCTTCTCGATTTAAGATCATTAGCCAAGTAGCCAAGGAAATCTATAGTATTCTTATATCAACTGTGCATTCTAAGTCAGCCTTTAGCACTGAAGGATGGGTGTTAGATCTTTTTGAAGATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGTAATATTCTATTTGAAGTATGTATTTAAAAATTTTAAATTATCCCATATAAGCTAACAATTTTGTCATTTCTATCTAGAATTCATAAACATAGGAAAGGAGATGGAAGCTGCATTTGAGAATCGAAATAATGACTCTATGGTCTAAATCCCTATTCTCAAATCTTTATTTACATTTTTTTGTTTTAAATTCTTAACTTGTTAAATATTGAATCTTGTTTTTTTAGAGTCTTGAAGCATAGTGATGGAAGCAATTGTAGGCAAAAGAAAATTTCATGTATGATTTATGTAAATTGAGAATACCTTTTTTTTTTTGTGATTTTCCTCTAATAGTGTTGAATCTTCATGTTCTTTATATTTTGGAGTTTGGTTGATAATTTCTGTATTTTATTGATCAAAACCTGTAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACAAAAACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGAGTTCAATTTTAATATCCTGTTTCAAAATTGTCTTTTGCTTTCTGACTATGATGGCTATTACTTGGGTTTTCTAATTTATGATCTCTTGTGTTTGTTGTTTCTGGGCTCTCTTGATTTTGGTTTTGGGATTGAGATTTGGGTTGTCTTTAATAGCTGAAATGGTTTGATTGGAGCAACTAATTTTAGGAATATGTTTATATGGTTCATTTAAGAGGATGTGGGTTTGGCAAAAGGTAATTGAAGAAAAGCAAGGTGTTGAAATGTTGTTAATGTTGAATAGAAATGAAGTGAAACGGTTATTATTTTGAATATTAGAGTTAGAAAGATTGATTAACTTTGGGTGAGGTTAAACAGGTACATGTATCCTTTGGTATATGTGTATTGTTGTTGAATCTAATCATATTATACATATGGTTGTGTTTGTTCCTTCTTTCTCTCATCTCTTATGTACATTGCACCTTTATTTGGTGATGGTCTCTCTCTTTCTGTCATCTCTTCTTTACACAGCCGATGCCGAGGAGGAGAAGAAAGAAGAGGAAAGTAAGAGGAGCAGTAAGGGGAGAGATCACTATAACAAATCTGGCCTTTAA

mRNA sequence

ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACAAAAACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGACCGATGCCGAGGAGGAGAAGAAAGAAGAGGAAAGTAAGAGGAGCAGTAAGGGGAGAGATCACTATAACAAATCTGGCCTTTAA

Coding sequence (CDS)

ATGTTTAACTCACCTCGATATTTTTTTTTGGGCGTTACATTGTTGGAATTAATAGCACATAGTCGAGGCTTCTGGGTTTATGCCAAGATGAAGACGACGTTTGAAAAATTAGAGGATCATGACCCTAGTTATTTGTCAAAGGATGATATTCCTACTACAGAAGACAGGGATAATGCAAGAGTATCATTAACTCCTCAAATTGCAAAGGCACTCATTTGTGTTCAGAATCGAATTCAATCTAAACCTTTGGATGACATGATTGAAGAAATTGACGAGGCTGAAGAAATTGATGAAGGGGGTTTTGTCATCGACAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGGGAGCTACTTCAATATAAGTTCTGAACCAAACAGGAGAGAAGTCCCAAAATATTCTGTTGATGAACAAAAACCAAAGAGGGAGAAGACTGATATATATGTGGATGATAATGGGTGGACCGATGCCGAGGAGGAGAAGAAAGAAGAGGAAAGTAAGAGGAGCAGTAAGGGGAGAGATCACTATAACAAATCTGGCCTTTAA

Protein sequence

MFNSPRYFFLGVTLLELIAHSRGFWVYAKMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDEGGFVIDNMENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEQKPKREKTDIYVDDNGWTDAEEEKKEEESKRSSKGRDHYNKSGL
Homology
[Close]
BLAST of MELO3C035641.2 vs. NCBI nr
Match: XP_004152939.1 (PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like [Cucumis sativus] >KGN56132.1 hypothetical protein Csa_3G077660 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 8.1e-18
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 106 MENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEQKPKREKTDIYVDDNGWT 160
           MENFGAASLRSRRL SYFN SSEPN+REVPKYSVDEQ PKREKTDIY+DDNGW+
Sbjct: 1   MENFGAASLRSRRLESYFNTSSEPNKREVPKYSVDEQIPKREKTDIYLDDNGWS 54

[Close]
BLAST of MELO3C035641.2 vs. NCBI nr
Match: XP_008463419.1 (PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 9.9e-16
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 106 MENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEQKPKREKTDIYVDDNGWT 160
           MENFGAASLRSRRL SY N SSEP +REVPKYSVDEQ PK EKTDIYVDDNGW+
Sbjct: 1   MENFGAASLRSRRLESYINTSSEPIKREVPKYSVDEQIPKSEKTDIYVDDNGWS 54

[Close]
BLAST of MELO3C035641.2 vs. NCBI nr
Match: XP_022150979.1 (1-acyl-sn-glycerol-3-phosphate acyltransferase-like [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-09
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 106 MENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEQKPKR-EKTDIYVDDNGWT 160
           M+N GAASLRSRRL S FN S EP +RE PK SVDEQ+ +R E+ D YVDDNGW+
Sbjct: 1   MDNLGAASLRSRRLESCFNTSYEPIKRETPKCSVDEQQIRRMERADFYVDDNGWS 55

[Close]
BLAST of MELO3C035641.2 vs. NCBI nr
Match: ADN33674.1 (transposase [Cucumis melo subsp. melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 57  DNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDEGGFVID 105
           D+ R SLTPQ A+ALIC QN IQSKPLDDM EEID AEEIDEG  + +
Sbjct: 297 DSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEGNILFE 344


HSP 2 Score: 55.5 bits (132), Expect = 2.3e-04
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV 62
          K + TFE+LE+HDPSYL KDDIPTTED DNA+V
Sbjct: 19 KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKV 51

[Close]
BLAST of MELO3C035641.2 vs. NCBI nr
Match: ACX85638.1 (putative transposase [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 57  DNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDEGGFVID 105
           D+ R SLTPQ A+ALIC QN IQSKPLDDM EEID AEEIDEG  + +
Sbjct: 630 DSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEGNILFE 677


HSP 2 Score: 55.5 bits (132), Expect = 2.3e-04
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV 62
           K + TFE+LE+HDPSYL KDDIPTTED DNA+V
Sbjct: 352 KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKV 384

[Close]
BLAST of MELO3C035641.2 vs. TrEMBL
Match: tr|A0A0A0L6B4|A0A0A0L6B4_CUCSA (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G077660 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.4e-18
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 106 MENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEQKPKREKTDIYVDDNGWT 160
           MENFGAASLRSRRL SYFN SSEPN+REVPKYSVDEQ PKREKTDIY+DDNGW+
Sbjct: 1   MENFGAASLRSRRLESYFNTSSEPNKREVPKYSVDEQIPKREKTDIYLDDNGWS 54

[Close]
BLAST of MELO3C035641.2 vs. TrEMBL
Match: tr|A0A1S3CJ60|A0A1S3CJ60_CUCME (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cucumis melo OX=3656 GN=LOC103501589 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.6e-16
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 106 MENFGAASLRSRRLGSYFNISSEPNRREVPKYSVDEQKPKREKTDIYVDDNGWT 160
           MENFGAASLRSRRL SY N SSEP +REVPKYSVDEQ PK EKTDIYVDDNGW+
Sbjct: 1   MENFGAASLRSRRLESYINTSSEPIKREVPKYSVDEQIPKSEKTDIYVDDNGWS 54

[Close]
BLAST of MELO3C035641.2 vs. TrEMBL
Match: tr|D0UIX2|D0UIX2_CUCME (Putative transposase OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-08
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 57  DNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDEGGFVID 105
           D+ R SLTPQ A+ALIC QN IQSKPLDDM EEID AEEIDEG  + +
Sbjct: 630 DSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEGNILFE 677


HSP 2 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 29  KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV 62
           K + TFE+LE+HDPSYL KDDIPTTED DNA+V
Sbjct: 352 KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKV 384

[Close]
BLAST of MELO3C035641.2 vs. TrEMBL
Match: tr|E5GB32|E5GB32_CUCME (Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-08
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 57  DNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDEGGFVID 105
           D+ R SLTPQ A+ALIC QN IQSKPLDDM EEID AEEIDEG  + +
Sbjct: 297 DSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEGNILFE 344


HSP 2 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 29 KMKTTFEKLEDHDPSYLSKDDIPTTEDRDNARV 62
          K + TFE+LE+HDPSYL KDDIPTTED DNA+V
Sbjct: 19 KCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKV 51

[Close]
BLAST of MELO3C035641.2 vs. TrEMBL
Match: tr|A0A1S3CNE8|A0A1S3CNE8_CUCME (zinc finger BED domain-containing protein RICESLEEPER 4-like OS=Cucumis melo OX=3656 GN=LOC103502449 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.3e-07
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 57  DNARVSLTPQIAKALICVQNRIQSKPLDDMIEEIDEAEEIDE 99
           D+ R SLTPQ A+ALIC QN IQSKPLDDM EEID AEEIDE
Sbjct: 121 DSFRSSLTPQTAEALICAQNWIQSKPLDDMTEEIDRAEEIDE 162

The following BLAST results are available for this feature:
BLAST of MELO3C035641.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152939.18.1e-1888.89PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like [Cucumis sativus]... [more]
XP_008463419.19.9e-1685.19PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like [Cucumis melo][more]
XP_022150979.15.3e-0967.271-acyl-sn-glycerol-3-phosphate acyltransferase-like [Momordica charantia][more]
ADN33674.11.0e-0770.83transposase [Cucumis melo subsp. melo][more]
ACX85638.11.0e-0770.83putative transposase [Cucumis melo][more]
BLAST of MELO3C035641.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035641.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035641.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6B4|A0A0A0L6B4_CUCSA5.4e-1888.891-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cucumis sativus OX=3659 GN=Csa... [more]
tr|A0A1S3CJ60|A0A1S3CJ60_CUCME6.6e-1685.191-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|D0UIX2|D0UIX2_CUCME6.6e-0870.83Putative transposase OS=Cucumis melo OX=3656 PE=4 SV=1[more]
tr|E5GB32|E5GB32_CUCME6.6e-0870.83Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3CNE8|A0A1S3CNE8_CUCME4.3e-0778.57zinc finger BED domain-containing protein RICESLEEPER 4-like OS=Cucumis melo OX=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035641.2.1MELO3C035641.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..185

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035641.2Cucurbita pepo (Zucchini)cpemedB562
MELO3C035641.2Bottle gourd (USVL1VR-Ls)lsimedB186
MELO3C035641.2Cucumber (Chinese Long) v3cucmedB025