MELO3C035632.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C035632.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionRetrotransposon protein
Locationchr12 : 15047661 .. 15050453 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCTTTCAACATCAAGGATGCAATGAAATTCCTGGTAGAAAATTTGTCTTTAAGTTTTTAGAAGCTCCTAATTCTTTTAATGAAGCATGTGATGATAATGATATATCCAATGACTTGAATTCTGTTGGAAAGAAAAATTTCCTTTATGAAAATTGTGTTGAAAAGAATTATTTGCTTGGTGTGAAAATTGTGTTGCTTGATGAGAATTGTGTTGACAAAAATGATTTGCTTGATGAGAATGTTAAAAGACTCTTGATTTGATTGTGAATATGTTGAAACTTTTGATAATGATCTTGAGACTGCCTATGAAAATTTTTTGTTCAATGGTGATGATCTTGAGATTGACTATGAAAATTTTTTGTTTAGCAATTGTGATCTTGAAATAGAATATGAGAATTTTTTGTTTAGTAATGAAGATCATGATTTAATCTCTCCTCTCGATAATTTTTCTTTGAATGAAAATTTAAAATTTGATAAAAATTATGAAATGGTTGTTGACAATTCAAAATTTTGTTGAGGAGATACTTTTGCGTAATGATAACTAAATACTATTATATGGAAAATTGAATAGTGATCAATCGGTTAATTTCGTTCAATGAAAATCGAATATATAATGATGATGATCATGTCCCTCTCATTGACTTTGTTTTTGAACAAGACTATTCTTTTAATGAAAAATTGTTTACTATACAGAAACTAGGGATCAAGCATTTGTCTCCCCCTCTTTACCTCCTCCAATACTTGTTTTTAGATTATGAAAAATCTCTTCTGGCATCTACTACACATGTTTATTCAATTTTATGAGTACTGAGTGACAAGTATGGTTAAAACAGATGAAGGAACAAAAGCCCAAATAATCGATCCAAAATGAGTTGGCAAAGCATGATTGAGCAATCGACCTTAAAAATTTATGTTTCTTGGAAGCAGCCAAATGTCAAATTTACAACTTTCTAGTTTTAGATTTTTTTTTTTCTTTTAGTTTTAAATTTTCAAGTATTTTTAAGCTTTCTAGTTTTTAGTTTAAATTGAGAGAACTTTTAATATCTTTTGATTTGTAGGATGAAAACAAAAGAAAAAGAAACAAGCTTTCAATTGGCAAGCCGAGGTCAACCAAAATGCACTCGCCCAGTTCGCTTTACTGTATTCTCCTACTTTCACTTTTGATCTTATGCTTTTAAAATTGGGGTTGGTTGGGTTTAACTCATTTGCATATTTGCTTGCTATTTTTTGTAGGATGAGTTTTGTTTTTATATTTGATTCATGCATATTTAGGTAGCTATATAGTGTTCCTTTAGAAAAGGATGCCTTTACTTAAATTCATTTATCGTCAGCCTGAAAGGTCGATCATTCCATTCTATCTACTAGATGAATTTCAGAATAGGGAAAAGTCCGTAAAAAATGGAGCAAAGCAAAAGTTTGCTAGCTATAGAAAAAGAAAAATTCAAAATTCAAAGTTCTAGCATATTTTTCTTGAGAACCCTATGTATAAATTGCTTTCTTGATTCAATGTTTAGTTCAATTTTCATTATTGTTTTCTAAATTAATTATTGCCTGTTTGAATTAGCTACTCATGATTGCATGAATTATCTTTAATTTCTAGTGGCATTAGTCATATTCTTTGAAGTATGAATGTTTGAAACTTATTGATTTGATCATTAGCATGTCATTTTCTATTGATCTTTCTTTGACTTTCAAGTAGAAATTTAACTAATGAACCATTCTTGAGATAAATGTACTCCTTGCACTTGAATGCATGTCACAACATGGAAGCCTAGAATCTCAATACAAATTCTAAAGATTTCATGAAAACCGCTAAGATGAAAATGATTTCTTTGAATTTAGTGTGAACTTTTCATTCTCATTGGATAATTAGTTTCTTTGACTAATGTTGTTGGTCGATTTAAATTACAGTGCACCATTTTGTTCTATGATAGAAAAATTGCTAAAATGATCTATTCCCACTTTTAATATTGTTCGAGAGAATTCATATTTTTTTCTTGTGCTAGAATCTAAACAAAAATAGAATATAATTTTAAAGAACTTCACACCTCTATTCATACTCGTAGCGGAAAAATTTCTCTTAAAGAACTTCACACCGTATATGTTGAAGAATCTGCCCTTCTCAAGCATTCGACCATCAATTTGACGCCTACTGCAATGGCTGCCTTTCATTCCTCTCAAAACCTTAACACTCAAGAAAGAAGCAAACGACACAGTTCAAGAAATTTTCACACTTCAGGTATTTTTTACATGCATGCAAGTTAGGCCAAAGGCAATTCAGGATCTCACGAATCAGGTCATTTCTTAGAAATATTTAGAAGAAAGACCTAATTTGCCTACGAAATTTCATAAAGATCCTAAATTATGATTTTTTTACATAACTAGGAATTCACTTATTTTTGGGACGATTTTATCCTTATGATTAACATTAATTATATACCAATTTCAAAATTAAGAATTAATTATTTTCTTAATCAGATTAGAACAAAAAATAATCACTCGCCGAAAAGGAACCGACTTCCTGAATAGAGCGATGGAACCAACTTGCCCGAACGTTGAATGTCTGTGTAATAATGAGCTTTTGAAAATCCTAATTAGCTGTTGACGGTGTATCTCTGCGCACGAAAGGGAGTTCCATATATACCCTCTTTAATTTTAGATAAGAATAAATAAAGACACTCATTGGAAGGGAAGAATGCTTCTGCACACAGTGATGGAACTGACTTGCCCAAACCTAAAATGTATGCAGAAGAACGAGCTTTTGAAAACCCTAATGATCGAACGTAG

mRNA sequence

ATGTCTTTCTTTCAACATCAAGGATGCAATGAAATTCCTGGTAGAAAATTTGTCTTTAAGTTTTTAGAAGCTCCTAATTCTTTTAATGAAGCATGTGATGATAATGATATATCCAATGACTTGAATTCTGTTGGAAAGAAAAATTTCCTTTATGAAAATTGTGTTGAAAAGAATTATTTGCTTGGTGTGAAAATTGTGTTGCTTGATGAGAATTGTGTTGACAAAAATGATTTGCTTGATGAGAATAAACTAGGGATCAAGCATTTGTCTCCCCCTCTTTACCTCCTCCAATACTTGTTTTTAGATTATGAAAAATCTCTTCTGGCATCTACTACACATGATGAAAACAAAAGAAAAAGAAACAAGCTTTCAATTGGCAAGCCGAGGTCAACCAAAATGCACTCGCCCAAACTTCACACCTCTATTCATACTCGTAGCGGAAAAATTTCTCTTAAAGAACTTCACACCGTATATGTTGAAGAATCTGCCCTTCTCAAGCATTCGACCATCAATTTGACGCCTACTGCAATGGCTGCCTTTCATTCCTCTCAAAACCTTAACACTCAAGAAAGAAGCAAACGACACAGTTCAAGAAATTTTCACACTTCAGAACAAAAAATAATCACTCGCCGAAAAGGAACCGACTTCCTGAATAGAGCGATGGAACCAACTTGCCCGAACGTTGAATGTCTACACTCATTGGAAGGGAAGAATGCTTCTGCACACAGTGATGGAACTGACTTGCCCAAACCTAAAATGTATGCAGAAGAACGAGCTTTTGAAAACCCTAATGATCGAACGTAG

Coding sequence (CDS)

ATGTCTTTCTTTCAACATCAAGGATGCAATGAAATTCCTGGTAGAAAATTTGTCTTTAAGTTTTTAGAAGCTCCTAATTCTTTTAATGAAGCATGTGATGATAATGATATATCCAATGACTTGAATTCTGTTGGAAAGAAAAATTTCCTTTATGAAAATTGTGTTGAAAAGAATTATTTGCTTGGTGTGAAAATTGTGTTGCTTGATGAGAATTGTGTTGACAAAAATGATTTGCTTGATGAGAATAAACTAGGGATCAAGCATTTGTCTCCCCCTCTTTACCTCCTCCAATACTTGTTTTTAGATTATGAAAAATCTCTTCTGGCATCTACTACACATGATGAAAACAAAAGAAAAAGAAACAAGCTTTCAATTGGCAAGCCGAGGTCAACCAAAATGCACTCGCCCAAACTTCACACCTCTATTCATACTCGTAGCGGAAAAATTTCTCTTAAAGAACTTCACACCGTATATGTTGAAGAATCTGCCCTTCTCAAGCATTCGACCATCAATTTGACGCCTACTGCAATGGCTGCCTTTCATTCCTCTCAAAACCTTAACACTCAAGAAAGAAGCAAACGACACAGTTCAAGAAATTTTCACACTTCAGAACAAAAAATAATCACTCGCCGAAAAGGAACCGACTTCCTGAATAGAGCGATGGAACCAACTTGCCCGAACGTTGAATGTCTACACTCATTGGAAGGGAAGAATGCTTCTGCACACAGTGATGGAACTGACTTGCCCAAACCTAAAATGTATGCAGAAGAACGAGCTTTTGAAAACCCTAATGATCGAACGTAG

Protein sequence

MSFFQHQGCNEIPGRKFVFKFLEAPNSFNEACDDNDISNDLNSVGKKNFLYENCVEKNYLLGVKIVLLDENCVDKNDLLDENKLGIKHLSPPLYLLQYLFLDYEKSLLASTTHDENKRKRNKLSIGKPRSTKMHSPKLHTSIHTRSGKISLKELHTVYVEESALLKHSTINLTPTAMAAFHSSQNLNTQERSKRHSSRNFHTSEQKIITRRKGTDFLNRAMEPTCPNVECLHSLEGKNASAHSDGTDLPKPKMYAEERAFENPNDRT
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035632.2.1MELO3C035632.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..267

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035632.2Wax gourdmedwgoB174
MELO3C035632.2Cucumber (Gy14) v2cgybmedB015
MELO3C035632.2Cucumber (Gy14) v1cgymedB527
MELO3C035632.2Cucumber (Gy14) v1cgymedB529
MELO3C035632.2Cucurbita maxima (Rimu)cmamedB421
MELO3C035632.2Wild cucumber (PI 183967)cpimedB017
MELO3C035632.2Cucumber (Chinese Long) v2cumedB016
MELO3C035632.2Bottle gourd (USVL1VR-Ls)lsimedB186
MELO3C035632.2Watermelon (97103) v1medwmB162
MELO3C035632.2Cucumber (Chinese Long) v3cucmedB015
MELO3C035632.2Cucumber (Chinese Long) v3cucmedB025