MELO3C035608.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035608.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description60S ribosomal protein L7a
Locationchr12 : 13496332 .. 13497394 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAACGAAAAACTTCCTCCATCTGGGGTTTGTTGTCGAGGAATAAAACGTTGTCGTCGAAACAATCCTCCAGCCAAGTTAAAATCTAGCCGTTGTCATCGAGACAATCCTCCAGCCACTGCCATCGAACTTTGGAACGTCACAACGTCGTCGAAATCTTGCTTCTCTGTAATGGGATTGGGGTATTTATGTCAGTTGTGGAATTAACAAGCTTGCTTCTATTCGGCGATCTGGGAAAACTCGCGATTGATTTATTAGGGTTTTTTATATTTACTTTTTATTGTGTCTCGTTATTAATTTAATTTCTTCATTTTTGACTAGTTATATTCCATTTGGAGTGTTAAAATTGCTAATAAGTCGAATAATCAGATATTTTGATTTTATCAATCTCTTCCATTTTTCTACGTTACTCGTTTCGTGTCATTTTAGAACAAGTCTTTGGAATACTTCTCCATGTTATATATAGTTTCAGCTATGTTGTTCTTGATATTTGTAGAAGTTGGTAACCATGTCTCTTTATTTGCCACACTCCTTTGAAGCCATGGATTTTTGTAAATTTTTTCTTTTAATAACAGGTTATCCACAAAAAGACTGCATCAATTTTGTGTTTAACAATAGTGAAGAATGAAGATAAGATGGAGTTTAGCAGGATCCTGGAAGCCATTAAGGTGACTTACACACACATAAAACCTAGATATGATCCAAGTTTATTTTATAGCATCCGTATTAGACTCATATCTAAACAACTTATTTGTTTTTTTGTTTTATGTTAAGGCTAATTTCAACGACAAGTACGAAGAATAAAAGAAGAAGTGGGGCGGTGGAATGATCATGAGATCCAAGTCTCAGGCAAAAACTAAGGCAAAGGAGAAATTACTGGCCAAAGAAGCTGATCAAAGGATGTCTTAGGTAATCAGAGTTGTTCTTTTGTAACTCTGCTGAATTTTATTTCATGAGAAAATTTGAGATACCAATTCTTTTTGGTATGTAGTTTAACTCAAACAGTAGAATTTGGAAGTTTTGTTTACTTTTAAGAGAACTTGATGTAGTATTTTCTCC

mRNA sequence

ATGCAAAAACGAAAAACTTCCTCCATCTGGGGTTTGTTGTCGAGGAATAAAACGTTGTCGTCGAAACAATCCTCCAGCCAACCGTTGTCATCGAGACAATCCTCCAGCCACTGCCATCGAACTTTGGAACGTCACAACGTCGTCGAAATCTTGCTTCTCTGTAATGGGATTGGGGTTATCCACAAAAAGACTGCATCAATTTTGTGTTTAACAATAGTGAAGAATGAAGATAAGATGGAGTTTAGCAGGATCCTGGAAGCCATTAAGGCTAATTTCAACGACAAGTACGAAGAATAAAAGAAGAAGTGGGGCGGTGGAATGATCATGAGATCCAAGTCTCAGGCAAAAACTAAGGCAAAGGAGAAATTACTGGCCAAAGAAGCTGATCAAAGGATGTCTTAGGTAATCAGAGTTGTTCTTTTGTAACTCTGCTGAATTTTATTTCATGAGAAAATTTGAGATACCAATTCTTTTTGGTATGTAGTTTAACTCAAACAGTAGAATTTGGAAGTTTTGTTTACTTTTAAGAGAACTTGATGTAGTATTTTCTCC

Coding sequence (CDS)

ATGCAAAAACGAAAAACTTCCTCCATCTGGGGTTTGTTGTCGAGGAATAAAACGTTGTCGTCGAAACAATCCTCCAGCCAACCGTTGTCATCGAGACAATCCTCCAGCCACTGCCATCGAACTTTGGAACGTCACAACGTCGTCGAAATCTTGCTTCTCTGTAATGGGATTGGGGTTATCCACAAAAAGACTGCATCAATTTTGTGTTTAACAATAGTGAAGAATGAAGATAAGATGGAGTTTAGCAGGATCCTGGAAGCCATTAAGGCTAATTTCAACGACAAGTACGAAGAATAA

Protein sequence

MQKRKTSSIWGLLSRNKTLSSKQSSSQPLSSRQSSSHCHRTLERHNVVEILLLCNGIGVIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE
Homology
[Close]
BLAST of MELO3C035608.2 vs. NCBI nr
Match: XP_008450136.1 (PREDICTED: 60S ribosomal protein L7a-2-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           ++HKKTAS+LCLT VKNEDKMEFSRILEAIKANFNDKYEE
Sbjct: 184 IVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYEE 223

[Close]
BLAST of MELO3C035608.2 vs. NCBI nr
Match: EMS53832.1 (hypothetical protein TRIUR3_00763 [Triticum urartu])

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 47  VVEILLLCNGIGVIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           VV +  LC  + ++HKKTAS+LCLT VKNEDK+EFS+ILEAIKANFNDK++E
Sbjct: 249 VVWLPALCRKMEIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDE 300

[Close]
BLAST of MELO3C035608.2 vs. NCBI nr
Match: XP_007145861.1 (hypothetical protein PHAVU_007G274200g [Phaseolus vulgaris] >ESW17855.1 hypothetical protein PHAVU_007G274200g [Phaseolus vulgaris])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+HKKTAS+LCLT VKNEDKMEFSRILEAIKANFNDKY+E
Sbjct: 186 VVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDE 225

[Close]
BLAST of MELO3C035608.2 vs. NCBI nr
Match: XP_008467259.1 (PREDICTED: 60S ribosomal protein L7a-2 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+HKKTAS+LCLT VKNEDKMEFSRILEAIKANFNDKY+E
Sbjct: 184 VVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDE 223

[Close]
BLAST of MELO3C035608.2 vs. NCBI nr
Match: XP_016499033.1 (PREDICTED: 60S ribosomal protein L7a-2-like [Nicotiana tabacum])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 50  ILLLCNGIGVIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           IL++ +   ++HKKTAS LCLT VKNEDKMEFSRILEAIKANFNDKYEE
Sbjct: 176 ILMIEHCFQIVHKKTASALCLTTVKNEDKMEFSRILEAIKANFNDKYEE 224

[Close]
BLAST of MELO3C035608.2 vs. TAIR10
Match: AT2G47610.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-13
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+H+KTAS LCLT VKNEDK+EFS+ILEAIKANFNDKYEE
Sbjct: 184 VVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEE 223

[Close]
BLAST of MELO3C035608.2 vs. TAIR10
Match: AT3G62870.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-13
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+H+KTA+ LCLT VKNEDK+EFS+ILEAIKANFNDKYEE
Sbjct: 183 VVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEE 222

[Close]
BLAST of MELO3C035608.2 vs. Swiss-Prot
Match: sp|P49692|RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-12
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+H+KTAS LCLT VKNEDK+EFS+ILEAIKANFNDKYEE
Sbjct: 184 VVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEE 223

[Close]
BLAST of MELO3C035608.2 vs. Swiss-Prot
Match: sp|P35685|RL7A1_ORYSJ (60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-12
Identity = 32/40 (80.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           ++HKKTAS+LCLT VKNEDK+EFS+ILEAIKANFNDK++E
Sbjct: 185 IVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDE 224

[Close]
BLAST of MELO3C035608.2 vs. Swiss-Prot
Match: sp|P0DKK7|RL7A2_ORYSJ (60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-12
Identity = 32/40 (80.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           ++HKKTAS+LCLT VKNEDK+EFS+ILEAIKANFNDK++E
Sbjct: 185 IVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDE 224

[Close]
BLAST of MELO3C035608.2 vs. Swiss-Prot
Match: sp|Q9LZH9|RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-12
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+H+KTA+ LCLT VKNEDK+EFS+ILEAIKANFNDKYEE
Sbjct: 183 VVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEE 222

[Close]
BLAST of MELO3C035608.2 vs. Swiss-Prot
Match: sp|P46223|RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster OX=7227 GN=RpL7A PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-04
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           ++ +KT + L LT V N DK  F ++LEA+K NFN+++EE
Sbjct: 198 LVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEE 237

[Close]
BLAST of MELO3C035608.2 vs. TrEMBL
Match: tr|A0A1S3BMZ4|A0A1S3BMZ4_CUCME (60S ribosomal protein L7a-2-like OS=Cucumis melo OX=3656 GN=LOC103491810 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           ++HKKTAS+LCLT VKNEDKMEFSRILEAIKANFNDKYEE
Sbjct: 184 IVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYEE 223

[Close]
BLAST of MELO3C035608.2 vs. TrEMBL
Match: tr|M7Z1M6|M7Z1M6_TRIUA (Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_00763 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 47  VVEILLLCNGIGVIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           VV +  LC  + ++HKKTAS+LCLT VKNEDK+EFS+ILEAIKANFNDK++E
Sbjct: 249 VVWLPALCRKMEIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDE 300

[Close]
BLAST of MELO3C035608.2 vs. TrEMBL
Match: tr|A0A0E0QHE0|A0A0E0QHE0_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 47  VVEILLLCNGIGVIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           VV +  LC  + ++HKKTAS+LCLT VKNEDK+EFS+ILEAIKANFNDK++E
Sbjct: 143 VVWLPALCRKMEIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDE 194

[Close]
BLAST of MELO3C035608.2 vs. TrEMBL
Match: tr|A0A1S3CUE8|A0A1S3CUE8_CUCME (60S ribosomal protein L7a-2 OS=Cucumis melo OX=3656 GN=LOC103504656 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+HKKTAS+LCLT VKNEDKMEFSRILEAIKANFNDKY+E
Sbjct: 184 VVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDE 223

[Close]
BLAST of MELO3C035608.2 vs. TrEMBL
Match: tr|V7BLC9|V7BLC9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G274200g PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 59  VIHKKTASILCLTIVKNEDKMEFSRILEAIKANFNDKYEE 99
           V+HKKTAS+LCLT VKNEDKMEFSRILEAIKANFNDKY+E
Sbjct: 186 VVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDE 225

The following BLAST results are available for this feature:
BLAST of MELO3C035608.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450136.13.9e-1190.00PREDICTED: 60S ribosomal protein L7a-2-like [Cucumis melo][more]
EMS53832.15.1e-1169.23hypothetical protein TRIUR3_00763 [Triticum urartu][more]
XP_007145861.16.7e-1190.00hypothetical protein PHAVU_007G274200g [Phaseolus vulgaris] >ESW17855.1 hypothet... [more]
XP_008467259.16.7e-1190.00PREDICTED: 60S ribosomal protein L7a-2 [Cucumis melo][more]
XP_016499033.16.7e-1177.55PREDICTED: 60S ribosomal protein L7a-2-like [Nicotiana tabacum][more]
BLAST of MELO3C035608.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47610.12.3e-1385.00Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT3G62870.15.1e-1382.50Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
BLAST of MELO3C035608.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49692|RL7A1_ARATH4.1e-1285.0060S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2[more]
sp|P35685|RL7A1_ORYSJ4.1e-1280.0060S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 ... [more]
sp|P0DKK7|RL7A2_ORYSJ4.1e-1280.0060S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 ... [more]
sp|Q9LZH9|RL7A2_ARATH9.1e-1282.5060S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=2 SV=1[more]
sp|P46223|RL7A_DROME2.4e-0447.5060S ribosomal protein L7a OS=Drosophila melanogaster OX=7227 GN=RpL7A PE=1 SV=2[more]
BLAST of MELO3C035608.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMZ4|A0A1S3BMZ4_CUCME2.6e-1190.0060S ribosomal protein L7a-2-like OS=Cucumis melo OX=3656 GN=LOC103491810 PE=4 SV... [more]
tr|M7Z1M6|M7Z1M6_TRIUA3.4e-1169.23Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_00763 PE=4 SV=1[more]
tr|A0A0E0QHE0|A0A0E0QHE0_ORYRU3.4e-1169.23Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1[more]
tr|A0A1S3CUE8|A0A1S3CUE8_CUCME4.4e-1190.0060S ribosomal protein L7a-2 OS=Cucumis melo OX=3656 GN=LOC103504656 PE=4 SV=1[more]
tr|V7BLC9|V7BLC9_PHAVU4.4e-1190.00Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G274200g PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038524Ribosomal_L7A/L8_sf
IPR001921Ribosomal_L7A/L8
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035608.2.1MELO3C035608.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001921Ribosomal protein L7A/L8PRINTSPR00882RIBOSOMALL7Acoord: 59..83
score: 41.09
coord: 91..98
score: 26.41
IPR038524Ribosomal protein L7A/L8 superfamilyGENE3DG3DSA:3.30.1330.210coord: 56..98
e-value: 5.1E-9
score: 37.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 59..98
NoneNo IPR availablePANTHERPTHR23105:SF7060S RIBOSOMAL PROTEIN L7A-1-RELATEDcoord: 59..98

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035608.2Cucumber (Chinese Long) v3cucmedB025
MELO3C035608.2Watermelon (97103) v2medwmbB126
MELO3C035608.2Cucumber (Gy14) v2cgybmedB022
MELO3C035608.2Cucurbita maxima (Rimu)cmamedB216
MELO3C035608.2Cucurbita maxima (Rimu)cmamedB414
MELO3C035608.2Cucurbita pepo (Zucchini)cpemedB033
MELO3C035608.2Cucurbita pepo (Zucchini)cpemedB564
MELO3C035608.2Wild cucumber (PI 183967)cpimedB025
MELO3C035608.2Cucumber (Chinese Long) v2cumedB024
MELO3C035608.2Bottle gourd (USVL1VR-Ls)lsimedB184
MELO3C035608.2Watermelon (Charleston Gray)medwcgB126
MELO3C035608.2Watermelon (97103) v1medwmB154