MELO3C035596.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035596.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Trab domain-containing
Location	chr12 : 12622624 .. 12624280 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGGAGGATGGATGGATAGATGGCTGCCTTATTCTTACTACTCTCTTCTTATGTGTTAGTTTGGTCAAATCTCACTCCTACCCCCCCTCTATTTCCTATTTTCTCTCTCTGCTGCATTTTCTGTCTCCCTCTCCTCTCCATTTTGAATATAGGGCATTTACCATTGTCATTCATCCTTCAAATGATGTGGTTGGCCGAAACTCAAATGACTTTTGGACAAATAGTATTAACCTTACTTTGCCTTGGGAAGTCGAAAGTTCAATCCAAAGTCTCCTTCTTGTTGGGATTATTTTTCCTTTTACAACACACAAAGAAAGATTAAAAATAATTCTTATTTTGGAAAAGCCTAAAGCTACCAAGTAGTAGATTTTTATTCGATGATCCTTGAGATGTGGTTAAGAATGAGGTTTTAGTTTTGAGTAACATCAGAAATGGTTCTTAGTCTCTTGATAAAAAATATTGATATGTTTGACATTTGTTTACTACTCTAATCATGAGAGTTTTATATATAGCTGTTGAATTTTCTTGAGTAAACAATTTGTTTTTTTTTTTTGTTTTTGGTTTTTGAAAGTTAAGCTTAAAAGCACTTCTATCTTTAATTGTTTTGTTTTGTTATCTGTTTTTTACTATTTTTTTCCAAAAGTTAAGCCAAATTTTAAAAATTATTTTCGAACTGTCCAAATCTCGGAGTATCGAATTTATAATAATTTGGGTGTTGATTGAGTGGTTAGTCGTGGATTAGCTCTTCTTATTCATTTTGGAATTCAAAATTTTAACTTTTACTTGGTGAAACCTTTTTTAGGTAGAATTTTTTATTTTAACTGAGACGAAAATACCCTTTCTGTAAAGTTTTTACTTTCTACCCAATTAAGTTTTGGGTTTTATAATATGTTGGATCTTCCCTTCAGTTCGACTTTTACAAATATGATTATGTATAAAGATACCATTTGTGTTTTTTCCTCTATATGATTGCTTCTTTTACCTATGAACCTTGTTTACTAACATTTGAAGAAAGACCATAATCAAAGCATATCAATTTTTGTTGAAGTTCAAATCAATACCTGTATCATATACTTCATGGTGTTGGAATTATCATTCTGTTGTGATTAATTTGCTGCTTCAGGAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCGTAAGTGCAATCCTACAATGCATTTTCAGATATTTTTCTTATCTATGTGAAAGAGAGAAAGAGTCTAATATCTCTCTTGATTTTCATGGTTAGGTTCCGCATTTGTTTTTGCAATCACCATTTTTCAATTCAACATTCACAATTACAAAGTGCTTAATATAGTTGTATTTGTAGCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGACCATATGAACGGTGTCATTTACGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAATAA

mRNA sequence

ATGGGATTGGAGGATGGATGGATAGATGGCTGCCTTATTCTTACTACTCTCTTCTTATGTGAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGACCATATGAACGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAATAA

Coding sequence (CDS)

ATGGGATTGGAGGATGGATGGATAGATGGCTGCCTTATTCTTACTACTCTCTTCTTATGTGAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGACCATATGAACGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAATAA

Protein sequence

MGLEDGWIDGCLILTTLFLCESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMNGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK

Homology

[Close]

BLAST of MELO3C035596.2 vs. NCBI nr
Match: XP_008439166.1 (PREDICTED: traB domain-containing protein [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 9.4e-36
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ESDGNGSSLQLYEKLSFSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 258 ESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 317

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKKA EGNSNGFVS+LLKSLVRDTIIGVILWVLYEQLK
Sbjct: 318 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLK 374

[Close]

BLAST of MELO3C035596.2 vs. NCBI nr
Match: XP_004140793.1 (PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 280 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 339

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 340 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 396

[Close]

BLAST of MELO3C035596.2 vs. NCBI nr
Match: KGN57340.1 (hypothetical protein Csa_3G180280 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 162 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 221

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 222 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 278

[Close]

BLAST of MELO3C035596.2 vs. NCBI nr
Match: XP_011651134.1 (PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 127 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 186

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 187 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 243

[Close]

BLAST of MELO3C035596.2 vs. NCBI nr
Match: XP_022968023.1 (traB domain-containing protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-28
Identity = 78/117 (66.67%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           E+  +GSSLQLYE+LSFSY SLLQPLIHERDT++A SLK SKAVNKSKRVV VIGR HMN
Sbjct: 144 EAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVIGRGHMN 203

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GK+A E  SNGFVS+LL+SLVRDTIIGV+ WVLYEQLK
Sbjct: 204 GVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYEQLK 259

[Close]

BLAST of MELO3C035596.2 vs. TAIR10
Match: AT5G52030.2 (TraB family protein)

HSP 1 Score: 107.5 bits (267), Expect = 5.9e-24
Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           E+D N  SLQLYE+LSFSY +LL PLIHERDT+LA SLK SKAVN  K VV VIG+ HMN
Sbjct: 274 ETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMN 333

Query: 81  G------------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQ 117
           G                               SNG++  +LKS VRDTIIG +LW LYEQ
Sbjct: 334 GVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIGFLLWELYEQ 393

[Close]

BLAST of MELO3C035596.2 vs. TrEMBL
Match: tr|A0A1S3AXQ2|A0A1S3AXQ2_CUCME (traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.2e-36
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ESDGNGSSLQLYEKLSFSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 258 ESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 317

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKKA EGNSNGFVS+LLKSLVRDTIIGVILWVLYEQLK
Sbjct: 318 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLK 374

[Close]

BLAST of MELO3C035596.2 vs. TrEMBL
Match: tr|A0A0A0L5T2|A0A0A0L5T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 162 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 221

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 222 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 278

[Close]

BLAST of MELO3C035596.2 vs. TrEMBL
Match: tr|A0A2P5C9Y0|A0A2P5C9Y0_9ROSA (Pheromone shutdown OS=Trema orientalis OX=63057 GN=TorRG33x02_292810 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ES  + S+ QLYE+LSFSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIG+ HMN
Sbjct: 144 ESSTDDSTFQLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGKGHMN 203

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKK   G+SNG++ +LLKSLVRDT+IG +LW LYEQ+K
Sbjct: 204 GVIYALVSDQGNLRFRDLAGKKPSAGDSNGWLDDLLKSLVRDTVIGFLLWELYEQIK 260

[Close]

BLAST of MELO3C035596.2 vs. TrEMBL
Match: tr|A0A2P5D9E4|A0A2P5D9E4_PARAD (Pheromone shutdown OS=Parasponia andersonii OX=3476 GN=PanWU01x14_083750 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 80
           ES  + S+ QLYE+LSFSY SLLQPL+HERDT+LA SLK SKAVNKSKRVV VIG+ HMN
Sbjct: 144 ESSTDDSTFQLYEQLSFSYPSLLQPLVHERDTYLAWSLKRSKAVNKSKRVVGVIGKGHMN 203

Query: 81  -------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
                              GKK    +SNG+  +LLKSLVRDT+IG +LW LYEQ+K
Sbjct: 204 GVIYALVSDQGNLRFRDLAGKKPSAADSNGWFDDLLKSLVRDTVIGFLLWELYEQIK 260

[Close]

BLAST of MELO3C035596.2 vs. TrEMBL
Match: tr|A0A200R0A7|A0A200R0A7_9MAGN (Pheromone shutdown OS=Macleaya cordata OX=56857 GN=BVC80_8929g26 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 69/119 (57.98%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 19  LCESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDH 78
           L + D + S  QLYE+LSFSY SLLQPLIHERDT+LA SLK SKAVN  KRVV VIG+ H
Sbjct: 274 LKDPDKDDSPFQLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNNCKRVVGVIGKGH 333

Query: 79  MN-------------------GKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 119
           MN                   GK+    NSNG++ N+LK LVRDTIIG++LW LYEQLK
Sbjct: 334 MNGVIYALVSDLGDLRFRDLVGKRPFGENSNGWIQNILKDLVRDTIIGILLWFLYEQLK 392

The following BLAST results are available for this feature:

BLAST of MELO3C035596.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439166.1	9.4e-36	76.92	PREDICTED: traB domain-containing protein [Cucumis melo]	[more]
XP_004140793.1	1.8e-34	74.36	PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus]	[more]
KGN57340.1	1.8e-34	74.36	hypothetical protein Csa_3G180280 [Cucumis sativus]	[more]
XP_011651134.1	1.8e-34	74.36	PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus]	[more]
XP_022968023.1	4.2e-28	66.67	traB domain-containing protein isoform X2 [Cucurbita maxima]	[more]

BLAST of MELO3C035596.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52030.2	5.9e-24	52.50	TraB family protein	[more]

BLAST of MELO3C035596.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035596.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXQ2\|A0A1S3AXQ2_CUCME	6.2e-36	76.92	traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1	[more]
tr\|A0A0A0L5T2\|A0A0A0L5T2_CUCSA	1.2e-34	74.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1	[more]
tr\|A0A2P5C9Y0\|A0A2P5C9Y0_9ROSA	2.6e-26	60.68	Pheromone shutdown OS=Trema orientalis OX=63057 GN=TorRG33x02_292810 PE=4 SV=1	[more]
tr\|A0A2P5D9E4\|A0A2P5D9E4_PARAD	2.9e-25	58.97	Pheromone shutdown OS=Parasponia andersonii OX=3476 GN=PanWU01x14_083750 PE=4 SV...	[more]
tr\|A0A200R0A7\|A0A200R0A7_9MAGN	1.1e-24	57.98	Pheromone shutdown OS=Macleaya cordata OX=56857 GN=BVC80_8929g26 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035596.2.1	MELO3C035596.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21530	PHEROMONE SHUTDOWN PROTEIN	coord: 21..118
None	No IPR available	PANTHER	PTHR21530:SF1	TRAB FAMILY PROTEIN	coord: 21..118

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035596.2	Wax gourd	medwgoB176
MELO3C035596.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035596.2	Cucumber (Gy14) v1	cgymedB528
MELO3C035596.2	Cucurbita maxima (Rimu)	cmamedB221
MELO3C035596.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C035596.2	Cucurbita moschata (Rifu)	cmomedB209
MELO3C035596.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C035596.2	Cucurbita pepo (Zucchini)	cpemedB006
MELO3C035596.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C035596.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035596.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035596.2	Melon (DHL92) v3.6.1	medmedB071
MELO3C035596.2	Bottle gourd (USVL1VR-Ls)	lsimedB192
MELO3C035596.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035596.2	Watermelon (97103) v1	medwmB167
MELO3C035596.2	Silver-seed gourd	carmedB0000
MELO3C035596.2	Silver-seed gourd	carmedB0967
MELO3C035596.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035596.2	Watermelon (97103) v2	medwmbB132