MELO3C035581.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035581.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTranscription factor GTE10
Locationchr12 : 11097177 .. 11097686 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAAAACGTTGGGGGAAGTGAAAAATACGTTGGAAAAGGATCTTCCGACGCAGTCCTCGGCGTTGGGACAAACGTCGgGGGAAGTGAGTCGGGATAGGCTTTCCCGATGTTGTGTTGGTCAGGCGTCGGGAAAGCCTCTCCCGACGCCGTTTTTTCCGACGCAATCCACGACATCGGGAAAGCCTCCCCCGACAGGCTTTATCGTGCAACTTTGTTAAGGAACCGTTTTGCCAACACTATACTAAAAGCTCGAGAAAAGGCTCTTGAAAAGGTTCGTTAAACTTGAGATTTTCTTGTTTGTCCAATGTTAGGCCAACCCTATGATGCACAGACGCACACATATTCATTCAATGAAAGTTGTTTCAATAAAAAAAAAATTCATTTGAGATATATTTGTTTTGAAAGTCATTGACTGACTTAGCTACAGGGTGACAAATGGGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGGCGGTGA

mRNA sequence

ATGCCGAAAAACGTTGGGGGAAGTGAAAAATACGTTGGAAAAGGATCTTCCGACGCAGTCCTCGGCGTTGGGACAAACGTCGgGGGAAGCGTCGGGAAAGCCTCTCCCGACGCCGTTTTTTCCGACGCAATCCACGACATCGGGAAAGCCTCCCCCGACAGGCTTTATCGTGCAACTTTGTTAAGGAACCGTTTTGCCAACACTATACTAAAAGCTCGAGAAAAGGCTCTTGAAAAGGGTGACAAATGGGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGGCGGTGA

Coding sequence (CDS)

ATGCCGAAAAACGTTGGGGGAAGTGAAAAATACGTTGGAAAAGGATCTTCCGACGCAGTCCTCGGCGTTGGGACAAACGTCGgGGGAAGCGTCGGGAAAGCCTCTCCCGACGCCGTTTTTTCCGACGCAATCCACGACATCGGGAAAGCCTCCCCCGACAGGCTTTATCGTGCAACTTTGTTAAGGAACCGTTTTGCCAACACTATACTAAAAGCTCGAGAAAAGGCTCTTGAAAAGGGTGACAAATGGGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGGCGGTGA

Protein sequence

MPKNVGGSEKYVGKGSSDAVLGVGTNVGGSVGKASPDAVFSDAIHDIGKASPDRLYRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREGWR
Homology
[Close]
BLAST of MELO3C035581.2 vs. NCBI nr
Match: PPE01602.1 (hypothetical protein GOBAR_DD01389 [Gossypium barbadense])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQRE 102
           YRA LLRNRFA+TILKAREKALEKG+K DPEK+RMEREELER+QRE
Sbjct: 585 YRAALLRNRFADTILKAREKALEKGEKGDPEKLRMEREELERRQRE 630

[Close]
BLAST of MELO3C035581.2 vs. NCBI nr
Match: ESR53294.1 (hypothetical protein CICLE_v10018939mg [Citrus clementina] >ESR53297.1 hypothetical protein CICLE_v10018939mg [Citrus clementina])

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA LLRNRFA+TILKAREKALEKG+K DPEK+R+EREELER+ REG
Sbjct: 597 YRAALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREG 643

[Close]
BLAST of MELO3C035581.2 vs. NCBI nr
Match: KDO69317.1 (hypothetical protein CISIN_1g004033mg [Citrus sinensis] >KDO69318.1 hypothetical protein CISIN_1g004033mg [Citrus sinensis])

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA LLRNRFA+TILKAREKALEKG+K DPEK+R+EREELER+ REG
Sbjct: 597 YRAALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREG 643

[Close]
BLAST of MELO3C035581.2 vs. NCBI nr
Match: EOY22413.1 (Nuclear protein X1 isoform 3 [Theobroma cacao])

HSP 1 Score: 73.6 bits (179), Expect = 4.6e-10
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA +LR RFA+TILKAREKALEKG+K DPEK+RMEREELER QREG
Sbjct: 601 YRAAVLRKRFADTILKAREKALEKGEKGDPEKLRMEREELERWQREG 647

[Close]
BLAST of MELO3C035581.2 vs. NCBI nr
Match: XP_020965881.1 (transcription factor GTE10 isoform X2 [Arachis ipaensis])

HSP 1 Score: 72.8 bits (177), Expect = 7.8e-10
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA LLR+RFA+TILKAREKALEK +K DPEK+RMEREELER+Q+EG
Sbjct: 591 YRAALLRSRFADTILKAREKALEKAEKQDPEKLRMEREELERRQKEG 637

[Close]
BLAST of MELO3C035581.2 vs. TAIR10
Match: AT5G63320.1 (nuclear protein X1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQ 99
           YRA  L+NRFA+TI+KAREKA  KG+K DPEK+R+EREE E++
Sbjct: 559 YRAAFLKNRFADTIMKAREKAFTKGEKGDPEKLRIEREEFEKR 601

[Close]
BLAST of MELO3C035581.2 vs. TAIR10
Match: AT3G27260.1 (global transcription factor group E8)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKAL-EKGDKWDPEKVRMEREELERQQR 101
           YRA LL+NRFA+ ILKAREK L + G K DPE++R EREEL  Q++
Sbjct: 535 YRAALLKNRFADIILKAREKPLPQNGIKGDPERLRKEREELVLQKK 580

[Close]
BLAST of MELO3C035581.2 vs. TAIR10
Match: AT5G14270.2 (bromodomain and extraterminal domain protein 9)

HSP 1 Score: 44.3 bits (103), Expect = 5.4e-05
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVR 90
           YRA +L+NRFA+ ILKAREK L + D  DPEK++
Sbjct: 509 YRAAILKNRFADIILKAREKPLNQNDTRDPEKLQ 542

[Close]
BLAST of MELO3C035581.2 vs. Swiss-Prot
Match: sp|Q9FGW9|GTE10_ARATH (Transcription factor GTE10 OS=Arabidopsis thaliana OX=3702 GN=GTE10 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQ 99
           YRA  L+NRFA+TI+KAREKA  KG+K DPEK+R+EREE E++
Sbjct: 559 YRAAFLKNRFADTIMKAREKAFTKGEKGDPEKLRIEREEFEKR 601

[Close]
BLAST of MELO3C035581.2 vs. Swiss-Prot
Match: sp|Q9LK27|GTE8_ARATH (Transcription factor GTE8 OS=Arabidopsis thaliana OX=3702 GN=GTE8 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKAL-EKGDKWDPEKVRMEREELERQQR 101
           YRA LL+NRFA+ ILKAREK L + G K DPE++R EREEL  Q++
Sbjct: 535 YRAALLKNRFADIILKAREKPLPQNGIKGDPERLRKEREELVLQKK 580

[Close]
BLAST of MELO3C035581.2 vs. TrEMBL
Match: tr|A0A2P5SRF3|A0A2P5SRF3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01389 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.0e-11
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQRE 102
           YRA LLRNRFA+TILKAREKALEKG+K DPEK+RMEREELER+QRE
Sbjct: 585 YRAALLRNRFADTILKAREKALEKGEKGDPEKLRMEREELERRQRE 630

[Close]
BLAST of MELO3C035581.2 vs. TrEMBL
Match: tr|V4TIV3|V4TIV3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018939mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA LLRNRFA+TILKAREKALEKG+K DPEK+R+EREELER+ REG
Sbjct: 597 YRAALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREG 643

[Close]
BLAST of MELO3C035581.2 vs. TrEMBL
Match: tr|A0A067G0T0|A0A067G0T0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g004033mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA LLRNRFA+TILKAREKALEKG+K DPEK+R+EREELER+ REG
Sbjct: 597 YRAALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREG 643

[Close]
BLAST of MELO3C035581.2 vs. TrEMBL
Match: tr|A0A061FZB5|A0A061FZB5_THECC (Nuclear protein X1 isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_014587 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA +LR RFA+TILKAREKALEKG+K DPEK+RMEREELER QREG
Sbjct: 601 YRAAVLRKRFADTILKAREKALEKGEKGDPEKLRMEREELERWQREG 647

[Close]
BLAST of MELO3C035581.2 vs. TrEMBL
Match: tr|A0A2K1XKD6|A0A2K1XKD6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G091800v3 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-10
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 56  YRATLLRNRFANTILKAREKALEKGDKWDPEKVRMEREELERQQREG 103
           YRA LLRNRFA+TILKAREKALEKG+K DPEK+R E+EE ER+Q+EG
Sbjct: 586 YRAALLRNRFADTILKAREKALEKGEKCDPEKLRKEKEEFERRQKEG 632

The following BLAST results are available for this feature:
BLAST of MELO3C035581.2 vs. NCBI nr
Match NameE-valueIdentityDescription
PPE01602.11.2e-1086.96hypothetical protein GOBAR_DD01389 [Gossypium barbadense][more]
ESR53294.12.7e-1082.98hypothetical protein CICLE_v10018939mg [Citrus clementina] >ESR53297.1 hypotheti... [more]
KDO69317.12.7e-1082.98hypothetical protein CISIN_1g004033mg [Citrus sinensis] >KDO69318.1 hypothetical... [more]
EOY22413.14.6e-1082.98Nuclear protein X1 isoform 3 [Theobroma cacao][more]
XP_020965881.17.8e-1080.85transcription factor GTE10 isoform X2 [Arachis ipaensis][more]
BLAST of MELO3C035581.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63320.11.2e-0967.44nuclear protein X1[more]
AT3G27260.11.7e-0663.04global transcription factor group E8[more]
AT5G14270.25.4e-0561.76bromodomain and extraterminal domain protein 9[more]
BLAST of MELO3C035581.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FGW9|GTE10_ARATH2.2e-0867.44Transcription factor GTE10 OS=Arabidopsis thaliana OX=3702 GN=GTE10 PE=1 SV=2[more]
sp|Q9LK27|GTE8_ARATH3.0e-0563.04Transcription factor GTE8 OS=Arabidopsis thaliana OX=3702 GN=GTE8 PE=2 SV=2[more]
BLAST of MELO3C035581.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5SRF3|A0A2P5SRF3_GOSBA8.0e-1186.96Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01389 PE=4 SV... [more]
tr|V4TIV3|V4TIV3_9ROSI1.8e-1082.98Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018939mg PE=4 ... [more]
tr|A0A067G0T0|A0A067G0T0_CITSI1.8e-1082.98Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g004033mg PE=4 SV=1[more]
tr|A0A061FZB5|A0A061FZB5_THECC3.0e-1082.98Nuclear protein X1 isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_014587 PE=4 SV=1[more]
tr|A0A2K1XKD6|A0A2K1XKD6_POPTR8.8e-1078.72Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G091800v3 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0051365 cellular response to potassium ion starvation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009409 response to cold
biological_process GO:0009651 response to salt stress
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035581.2.1MELO3C035581.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..104
NoneNo IPR availablePANTHERPTHR22880FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINScoord: 46..101
NoneNo IPR availablePANTHERPTHR22880:SF228TRANSCRIPTION FACTOR GTE10coord: 46..101

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035581.2Watermelon (97103) v2medwmbB132
MELO3C035581.2Wax gourdmedwgoB176
MELO3C035581.2Cucumber (Gy14) v2cgybmedB009
MELO3C035581.2Cucumber (Gy14) v1cgymedB361
MELO3C035581.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035581.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035581.2Cucurbita pepo (Zucchini)cpemedB557
MELO3C035581.2Wild cucumber (PI 183967)cpimedB011
MELO3C035581.2Cucumber (Chinese Long) v2cumedB010
MELO3C035581.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035581.2Watermelon (Charleston Gray)medwcgB133
MELO3C035581.2Cucumber (Chinese Long) v3cucmedB009