MELO3C035578.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035578.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Hydroxyproline-rich glycoprotein family protein
Location	chr12 : 11052835 .. 11053410 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGATAAAAGCTTCTTAATCCTTGTTCTTGTATTTATAACTCTATCATCAACAACCATCAAAGGGAGTGAAGCAGGACGTCATCTCCAACAATCATTGCCTTCTGTTCCATCAATCAGTTCACCTCTCCTCCCTAACATTCCACCGGTTACTATCCCAAACGTTCCTTTATTGCCTTCGATTCCATTCGTGCCTAATACTCCACCTGTTACTATTCCAAACATTCCTATCCCGAACGTTCCTTCTTTGCTTTCGATTCCACTCGTCCCTAATATTCCATCCGTTACTATCCCGAACGTTCCTTCATTACCTTCGATTCCACTCATCCCTAATATTCCACCTGTTACTTTCCCGGACGTTCCTATCCCAGACATTCCTTTATTGCCTTCAATTCCACTTGTCTCTAATATTCCACCCGTTACTTTCCCGGACGTTCCTTCATTGCCTTCGATTCCACTTGTCTCTAATATTCCACCTGTTACTATCCCCAACGTTCCTTCTATTCTATCCACCGATTTTCCTCCCCTTCCTAATATTCCAGTTATCCCGAGCATTCCTTCCACTCCCTAG

mRNA sequence

ATGGCTTCCGATAAAAGCTTCTTAATCCTTGTTCTTGTATTTATAACTCTATCATCAACAACCATCAAAGGGAGTGAAGCAGGACGTCATCTCCAACAATCATTGCCTTCTGTTCCATCAATCAGTTCACCTCTCCTCCCTAACATTCCACCGGTTACTATCCCAAACGTTCCTTTATTGCCTTCGATTCCATTCGTGCCTAATACTCCACCTGTTACTATTCCAAACATTCCTATCCCGAACGTTCCTTCTTTGCTTTCGATTCCACTCGTCCCTAATATTCCATCCGTTACTATCCCGAACGTTCCTTCATTACCTTCGATTCCACTCATCCCTAATATTCCACCTGTTACTTTCCCGGACGTTCCTATCCCAGACATTCCTTTATTGCCTTCAATTCCACTTGTCTCTAATATTCCACCCGTTACTTTCCCGGACGTTCCTTCATTGCCTTCGATTCCACTTGTCTCTAATATTCCACCTGTTACTATCCCCAACGTTCCTTCTATTCTATCCACCGATTTTCCTCCCCTTCCTAATATTCCAGTTATCCCGAGCATTCCTTCCACTCCCTAG

Coding sequence (CDS)

ATGGCTTCCGATAAAAGCTTCTTAATCCTTGTTCTTGTATTTATAACTCTATCATCAACAACCATCAAAGGGAGTGAAGCAGGACGTCATCTCCAACAATCATTGCCTTCTGTTCCATCAATCAGTTCACCTCTCCTCCCTAACATTCCACCGGTTACTATCCCAAACGTTCCTTTATTGCCTTCGATTCCATTCGTGCCTAATACTCCACCTGTTACTATTCCAAACATTCCTATCCCGAACGTTCCTTCTTTGCTTTCGATTCCACTCGTCCCTAATATTCCATCCGTTACTATCCCGAACGTTCCTTCATTACCTTCGATTCCACTCATCCCTAATATTCCACCTGTTACTTTCCCGGACGTTCCTATCCCAGACATTCCTTTATTGCCTTCAATTCCACTTGTCTCTAATATTCCACCCGTTACTTTCCCGGACGTTCCTTCATTGCCTTCGATTCCACTTGTCTCTAATATTCCACCTGTTACTATCCCCAACGTTCCTTCTATTCTATCCACCGATTTTCCTCCCCTTCCTAATATTCCAGTTATCCCGAGCATTCCTTCCACTCCCTAG

Protein sequence

MASDKSFLILVLVFITLSSTTIKGSEAGRHLQQSLPSVPSISSPLLPNIPPVTIPNVPLLPSIPFVPNTPPVTIPNIPIPNVPSLLSIPLVPNIPSVTIPNVPSLPSIPLIPNIPPVTFPDVPIPDIPLLPSIPLVSNIPPVTFPDVPSLPSIPLVSNIPPVTIPNVPSILSTDFPPLPNIPVIPSIPSTP

Homology

[Close]

BLAST of MELO3C035578.2 vs. NCBI nr
Match: XP_016902796.1 (PREDICTED: formin-2-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-12
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASDKSFLILVLVFITLSSTTIKGSEAGRHLQQSLPSVPSIXXXXXXXXXXXXXXXXXXL 60
          MASDKSFLILVLVFITLSSTTIKGSEAGRHLQQSLPSVPSIXXXXXXXXXXXXXXXXXXL
Sbjct: 1  MASDKSFLILVLVFITLSSTTIKGSEAGRHLQQSLPSVPSIXXXXXXXXXXXXXXXXXXL 60

Query: 61 PXXXXXXXXXXXXXXXXXXPNVPSL 86
          PXXXXXXXXXXXXXXXXXXPNVPSL
Sbjct: 61 PXXXXXXXXXXXXXXXXXXPNVPSL 85

[Close]

BLAST of MELO3C035578.2 vs. TrEMBL
Match: tr|A0A1S4E3J0|A0A1S4E3J0_CUCME (formin-2-like OS=Cucumis melo OX=3656 GN=LOC107991890 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASDKSFLILVLVFITLSSTTIKGSEAGRHLQQSLPSVPSIXXXXXXXXXXXXXXXXXXL 60
          MASDKSFLILVLVFITLSSTTIKGSEAGRHLQQSLPSVPSIXXXXXXXXXXXXXXXXXXL
Sbjct: 1  MASDKSFLILVLVFITLSSTTIKGSEAGRHLQQSLPSVPSIXXXXXXXXXXXXXXXXXXL 60

Query: 61 PXXXXXXXXXXXXXXXXXXPNVPSL 86
          PXXXXXXXXXXXXXXXXXXPNVPSL
Sbjct: 61 PXXXXXXXXXXXXXXXXXXPNVPSL 85

The following BLAST results are available for this feature:

BLAST of MELO3C035578.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902796.1	4.0e-12	100.00	PREDICTED: formin-2-like [Cucumis melo]	[more]

BLAST of MELO3C035578.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035578.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035578.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E3J0\|A0A1S4E3J0_CUCME	2.7e-12	100.00	formin-2-like OS=Cucumis melo OX=3656 GN=LOC107991890 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035578.2.1	MELO3C035578.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C035578.2	CsaV3_1G014660	Cucumber (Chinese Long) v3	cucmedB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035578.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035578.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035578.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035578.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035578.2	Cucurbita pepo (Zucchini)	cpemedB557
MELO3C035578.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035578.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035578.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035578.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035578.2	Watermelon (97103) v2	medwmbB132
MELO3C035578.2	Wax gourd	medwgoB176