MELO3C035577.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035577.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	NBS-LRR type resistance protein
Location	chr12 : 10969318 .. 10972595 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGGATGGTTGATGGCAAGCGATTGGCTTCGACGACAAGGCTAAGCGGCGGAGGCAAAACTGAACCAGGGCGACTAGGGTTTTATGGTTGAGGAAGACGATGAATTAAAGACTATCCACGCTTCCCGAGGGCTTaTTTAAAGCATATTATTATTATTATTATTATTATTATTATTTTCTTTTTTTCCCTATTCTTTTCCAAAACAAAATAAATCTCATACATTCTCTCTCTTCATTTAGAACCCATCAAATCTCCTTTTTAAACTCAAATATTCTCTCTCTTTATTAACTCTTCCCATCAAATCCTTTTTTTCCGCCAAAATAATATATCTTTTCTCGAATAATTATATTATCCCCAATAATATAATTATTCTTATCCTTTTCACAAATTATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAACACACGTTCGAGCTGGGACATTCGTGTCGCAGGCCGCCGAGGATGCGCATGTAAGTTATGCCCTTATTAATTATCCACTTTCATTATATATTATTGTGCGTTACCTAACATAGTTTTTAAATTTGTTGCAGAATCAAATGCTGGAACTCCAATCACAGCCTACCCCAGAGGGTAGTCAGCCATTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCTAAGCCGAAGGCCCGCAGAACGGCGAGTGCAAGCAGTTCGTCGACATCTTGTTCGTAGTCCACAGAAAAAGAGATTGAATTACAAACTAAACTTCAAGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTAGAAAGTATGAAAAAGATGATAGAAGAATTTACTCGTGCACAACAGGGACCACCACATGATCCCTAGCTCTGCGGTACGTATATGTCTCTATTATTTTTAAGTTTTTGCAAATATATGATTATGTACTAAATTTAGTTATTTTTATATCATTTTTAGGACTGAAGGTGTAGAATGACGCGCATACGCATCTCGTTGGAAGACTTTTTCTTATGTTTATGTTTTTTCTATTTTGAGAACTATATTTATTGTAGTGAACTATATTTTCGTATTATTAATTTTAATTCTATTTTTTTTAATTTGTGTTTGTATATTTCTTAATTTAT

mRNA sequence

ATGGCTCGGATGGTTGATGGCAAGCGATTGGCTTCGACGACAAGGCTAAGCGGCGGAGGCAAAACTGAACCAGGGCGACTAGGAATCAAATGCTGGAACTCCAATCACAGCCTACCCCAGAGGGTAGTCAGCCATTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCTAAGCCGAAGGCCCGCAGAACGGCGAGTGCAAGCAGTTCGTCGACATCTTGTTCGTAGTCCACAGAAAAAGAGATTGAATTACAAACTAAACTTCAAGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTAGAAAGTATGAAAAAGATGATAGAAGAATTTACTCGTGCACAACAGGGACCACCACATGATCCCTAGCTCTGCGGACTGAAGGTGTAGAATGACGCGCATACGCATCTCGTTGGAAGACTTTTTCTTATGTTTATGTTTTTTCTATTTTGAGAACTATATTTATTGTAGTGAACTATATTTTCGTATTATTAATTTTAATTCTATTTTTTTTAATTTGTGTTTGTATATTTCTTAATTTAT

Coding sequence (CDS)

ATGGCTCGGATGGTTGATGGCAAGCGATTGGCTTCGACGACAAGGCTAAGCGGCGGAGGCAAAACTGAACCAGGGCGACTAGGAATCAAATGCTGGAACTCCAATCACAGCCTACCCCAGAGGGTAGTCAGCCATTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCTAAGCCGAAGGCCCGCAGAACGGCGAGTGCAAGCAGTTCGTCGACATCTTGTTCGTAGTCCACAGAAAAAGAGATTGAATTACAAACTAAACTTCAAGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAG

Protein sequence

MARMVDGKRLASTTRLSGGGKTEPGRLGIKCWNSNHSLPQRVVSHSLRMRYAIRCWVDDQATQKALVGDLSRRPAERRVQAVRRHLVRSPQKKRLNYKLNFKKLWNGLKYKIEITKH

Homology

[Close]

BLAST of MELO3C035577.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 29  IKCWNSNHSLPQRVVSHSLRMRYAIRCWVDDQATQKALVGDLSRRPAERRVQAVRRHLVR 88
           IKCWNSN SLPQR+V+HSLRM+YAIRCWVDDQATQKALVGD SRRPAERRVQAVRR L  
Sbjct: 82  IKCWNSNPSLPQRIVTHSLRMKYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRRL-- 141

Query: 89  SPQKKRLNYKLNFKKLWNGLKYKIEITKH 118
             QKKRLNYKLNF KLWNGLKYKIEITKH
Sbjct: 142 --QKKRLNYKLNFMKLWNGLKYKIEITKH 166

[Close]

BLAST of MELO3C035577.2 vs. NCBI nr
Match: BAD93311.1 (NBS-LRR type resistance protein, partial [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 63  QKALVGDLSRRPAERRVQAVRRHLVRSPQKKRLNYKLNFKKLWNGLKYKIEI 115
           +KALVGD SRRPAER+VQAVRRHLVRSPQKKRLNYKLNF KLWNGLKYKIEI
Sbjct: 11  KKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEI 62

[Close]

BLAST of MELO3C035577.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 29  IKCWNSNHSLPQRVVSHSLRMRYAIRCWVDDQATQKALVGDLSRRPAERRVQAVRRHLVR 88
           IKCWNSN SLPQR+V+HSLRM+YAIRCWVDDQATQKALVGD SRRPAERRVQAVRR L  
Sbjct: 82  IKCWNSNPSLPQRIVTHSLRMKYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRRL-- 141

Query: 89  SPQKKRLNYKLNFKKLWNGLKYKIEITKH 118
             QKKRLNYKLNF KLWNGLKYKIEITKH
Sbjct: 142 --QKKRLNYKLNFMKLWNGLKYKIEITKH 166

[Close]

BLAST of MELO3C035577.2 vs. TrEMBL
Match: tr|Q588X0|Q588X0_CUCME (NBS-LRR type resistance protein (Fragment) OS=Cucumis melo OX=3656 GN=MRGA-3 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 63  QKALVGDLSRRPAERRVQAVRRHLVRSPQKKRLNYKLNFKKLWNGLKYKIEI 115
           +KALVGD SRRPAER+VQAVRRHLVRSPQKKRLNYKLNF KLWNGLKYKIEI
Sbjct: 11  KKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEI 62

The following BLAST results are available for this feature:

BLAST of MELO3C035577.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34241.1	6.0e-35	87.64	NBS-LRR type resistance protein [Cucumis melo subsp. melo]	[more]
BAD93311.1	2.2e-16	92.31	NBS-LRR type resistance protein, partial [Cucumis melo]	[more]

BLAST of MELO3C035577.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035577.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035577.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCP2\|E5GCP2_CUCME	4.0e-35	87.64	NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|Q588X0\|Q588X0_CUCME	1.4e-16	92.31	NBS-LRR type resistance protein (Fragment) OS=Cucumis melo OX=3656 GN=MRGA-3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035577.2.1	MELO3C035577.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035577.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035577.2	Watermelon (97103) v2	medwmbB132
MELO3C035577.2	Wax gourd	medwgoB176
MELO3C035577.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035577.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035577.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035577.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035577.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C035577.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035577.2	Cucurbita pepo (Zucchini)	cpemedB557
MELO3C035577.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035577.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035577.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035577.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035577.2	Watermelon (97103) v1	medwmB155