MELO3C035576.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035576.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionpseudouridine-5'-phosphate glycosidase isoform X2
Locationchr12 : 10863278 .. 10864347 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCTCGCCACACGTAACTATCCTCTCCATTCGCTTGCAGCCGGATACTCATTGCCGCATGCAAAAAAAGGCTTCTACTCGTGTCGTTCTTTCTAGTTAGCCCTCGCACTGCCAGTAAGGAGCTTTTGAAGTCTCTCTCTTTTATTCCCCACCATCATTCTCTTGTTTTACTTATTATAGTTGAAATATTGTATTTGGAATGATTGTAGTTATTCTTATCAATAAGAAAACCCGGCAAAATGGAATGGACAACAAAATAGAGTAGCTAGGAGATTTAAGTTTGTATCTTTCTCACTCATTTCCTCCTTTATTTTCCTGCAGCATTTTATGTTTTCTTGTCTTGCAATGAAATTCTTCTTTGTGGGATTTTGGTGCTTTTGCTTCTCATTTTTTATTACTTTTGCTACTGTACCCCAATATTAGTTAAGGGTGGATAATTGAAGCATTTCTAGGTATTGTTATAGTTATTGTTAAATTTTTATCTATAAAGGTTTTAGAAGGGTTATTCATGAGTTATCTTGCCACGTTTTTCCTGCAAATTGTATCCTCCTGCTTGTTTCGACTATGTTTGCATTTATATAGGGAGGAGTTTGCATATGAATTGGTATAGGGTGGCGATTTCATACGCACTAGCTTAGCATAATTTAAAATACTGTAGTATTGTAGTTGAAATGTTGTATTTGGAAATGACAATTCTTTTCAAGGTAATTGTTGTAACTAATGTAGCTTGGAAATGTTGTATTTGGAAATGATAGCTCTTCTCAGTTTCTATATAAGTGAGAGATTAGAACACTGAAAATTTATACACCAAGAACGGTTGTCTTCTCTGCAAAGGAATTGAGTTATAGAGTTCTAAGTATGATGCCACTCAAATATTTCATCACATAGTTTGACAATCTAAAATGATAATTGCTGCTCATTCCATTCTTCTATATATTTATTAATTTTTATTATCTTCCTCTACAGATACCAACATGAATCTTGAGCTTGGAAGTGGAATTCTGATTTTTGTTTCAATTTCAAATGAGCATTCAGCTTCTGGAAGCTTAATTGAGAATGCAATATAA

mRNA sequence

ATGCTCCTCGCCACACGTAACTATCCTCTCCATTCGCTTGCAGCCGGATACTCATTGCCGCATGCAAAAAAAGGCTTCTACTCGTGTCATACCAACATGAATCTTGAGCTTGGAAGTGGAATTCTGATTTTTGTTTCAATTTCAAATGAGCATTCAGCTTCTGGAAGCTTAATTGAGAATGCAATATAA

Coding sequence (CDS)

ATGCTCCTCGCCACACGTAACTATCCTCTCCATTCGCTTGCAGCCGGATACTCATTGCCGCATGCAAAAAAAGGCTTCTACTCGTGTCATACCAACATGAATCTTGAGCTTGGAAGTGGAATTCTGATTTTTGTTTCAATTTCAAATGAGCATTCAGCTTCTGGAAGCTTAATTGAGAATGCAATATAA

Protein sequence

MLLATRNYPLHSLAAGYSLPHAKKGFYSCHTNMNLELGSGILIFVSISNEHSASGSLIENAI
Homology
[Close]
BLAST of MELO3C035576.2 vs. NCBI nr
Match: XP_004139051.1 (PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sativus] >XP_011660154.1 PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sativus] >KGN66518.1 hypothetical protein Csa_1G616850 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 32  NMNLELGSGILIFVSISNEHSASGSLIENAI 63
           NMNLELGSG+LI V I NEHSASGSLIENAI
Sbjct: 252 NMNLELGSGVLIAVPIPNEHSASGSLIENAI 282

[Close]
BLAST of MELO3C035576.2 vs. TrEMBL
Match: tr|A0A0A0LXQ4|A0A0A0LXQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-04
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 32  NMNLELGSGILIFVSISNEHSASGSLIENAI 63
           NMNLELGSG+LI V I NEHSASGSLIENAI
Sbjct: 252 NMNLELGSGVLIAVPIPNEHSASGSLIENAI 282

[Close]
BLAST of MELO3C035576.2 vs. TrEMBL
Match: tr|A0A1S3BQ44|A0A1S3BQ44_CUCME (pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 32  NMNLELGSGILIFVSISNEHSASGSLIENAI 63
           NMNLELGSGILI V I NEHSASGSLIE AI
Sbjct: 253 NMNLELGSGILIAVPIPNEHSASGSLIEKAI 283

[Close]
BLAST of MELO3C035576.2 vs. TrEMBL
Match: tr|A0A1S3BNH4|A0A1S3BNH4_CUCME (pseudouridine-5'-phosphate glycosidase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 32  NMNLELGSGILIFVSISNEHSASGSLIENAI 63
           NMNLELGSGILI V I NEHSASGSLIE AI
Sbjct: 252 NMNLELGSGILIAVPIPNEHSASGSLIEKAI 282

[Close]
BLAST of MELO3C035576.2 vs. TrEMBL
Match: tr|A0A1S3BP55|A0A1S3BP55_CUCME (pseudouridine-5'-phosphate glycosidase isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 32  NMNLELGSGILIFVSISNEHSASGSLIENAI 63
           NMNLELGSGILI V I NEHSASGSLIE AI
Sbjct: 253 NMNLELGSGILIAVPIPNEHSASGSLIEKAI 283

The following BLAST results are available for this feature:
BLAST of MELO3C035576.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139051.12.9e-0487.10PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sat... [more]
BLAST of MELO3C035576.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035576.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035576.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXQ4|A0A0A0LXQ4_CUCSA1.9e-0487.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1[more]
tr|A0A1S3BQ44|A0A1S3BQ44_CUCME7.3e-0487.10pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3BNH4|A0A1S3BNH4_CUCME7.3e-0487.10pseudouridine-5'-phosphate glycosidase isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3BP55|A0A1S3BP55_CUCME7.3e-0487.10pseudouridine-5'-phosphate glycosidase isoform X3 OS=Cucumis melo OX=3656 GN=LOC... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035576.2.1MELO3C035576.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035576.2Cucumber (Gy14) v2cgybmedB009
MELO3C035576.2Cucumber (Gy14) v1cgymedB361
MELO3C035576.2Cucurbita maxima (Rimu)cmamedB161
MELO3C035576.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035576.2Cucurbita moschata (Rifu)cmomedB151
MELO3C035576.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035576.2Cucurbita pepo (Zucchini)cpemedB557
MELO3C035576.2Wild cucumber (PI 183967)cpimedB011
MELO3C035576.2Cucumber (Chinese Long) v2cumedB010
MELO3C035576.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035576.2Watermelon (Charleston Gray)medwcgB133
MELO3C035576.2Watermelon (97103) v1medwmB155
MELO3C035576.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035576.2Watermelon (97103) v2medwmbB132
MELO3C035576.2Wax gourdmedwgoB176