MELO3C035570.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035570.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr12 : 10497872 .. 10498342 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGACCTTCAAGATCCTAGGTTCTAACGTCCATGCTTCAACGATCGATAGCCGAATAAAATTGTTGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATACATTGTCGCAGAGAAAGAAGTCTTCGACGATTTGGTCAAGGTGCGTTACTAATCATTTGAACAATTACTGTAGTATAAATTTAAAAAAAAAAAAGGACTAACAATTTATTATTGCACTTGTACAGAGTCATCCGGCAGCCAAAGGCCTCCTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACATGTTTGAAAAAGATCGTGCGACGGCAGGCCGGTCGAGACTTTTGCGGATGTTAGGTCAAACAATCCTATTGGGTATGAGGCATTTACCGCTGATGCTGTGTCGAATATGGACTTCCAGCCAATGTACAGTCACTGA

mRNA sequence

ATGATGACCTTCAAGATCCTAGGTTCTAACGTCCATGCTTCAACGATCGATAGCCGAATAAAATTGTTGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATACATTGTCGCAGAGAAAGAAGTCTTCGACGATTTGGTCAAGAGTCATCCGGCAGCCAAAGGCCTCCTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACATATCGTGCGACGGCAGGCCGGTCGAGACTTTTGCGGATGTTAGGTCAAACAATCCTATTGGGTATGAGGCATTTACCGCTGATGCTGTGTCGAATATGGACTTCCAGCCAATGTACAGTCACTGA

Coding sequence (CDS)

ATGATGACCTTCAAGATCCTAGGTTCTAACGTCCATGCTTCAACGATCGATAGCCGAATAAAATTGTTGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATACATTGTCGCAGAGAAAGAAGTCTTCGACGATTTGGTCAAGAGTCATCCGGCAGCCAAAGGCCTCCTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACATATCGTGCGACGGCAGGCCGGTCGAGACTTTTGCGGATGTTAGGTCAAACAATCCTATTGGGTATGAGGCATTTACCGCTGATGCTGTGTCGAATATGGACTTCCAGCCAATGTACAGTCACTGA

Protein sequence

MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSFLHYDELSYISCDGRPVETFADVRSNNPIGYEAFTADAVSNMDFQPMYSH
Homology
[Close]
BLAST of MELO3C035570.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 93/127 (73.23%), Postives = 104/127 (81.89%), Query Frame = 0 

Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSN+HASTIDSRIKL+KRMFHAL EMRGP CSGFGWNDE+K IVAEKEVFDD 
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNPIGYEAFTADAVSNM 120
           VKSHP AKGLLNKSF+HYDELSY+       G   E+FAD+ SN+P GY+AF ADA+ + 
Sbjct: 107 VKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDT 166

Query: 121 DFQPMYS 124
           DF PMYS
Sbjct: 167 DFPPMYS 173

[Close]
BLAST of MELO3C035570.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 91/127 (71.65%), Postives = 102/127 (80.31%), Query Frame = 0 

Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSN+HASTIDSRIKL+KRMFHAL EMRGP CSGFGWNDE+K IVAEKEVFDD 
Sbjct: 406 MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 465

Query: 61  VKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNPIGYEAFTADAVSNM 120
             SHPAAKGLLNKSF+HYDELSY+       G   E+FAD+ SN+P GY+A  ADA+ + 
Sbjct: 466 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 525

Query: 121 DFQPMYS 124
           DF PMYS
Sbjct: 526 DFPPMYS 530

[Close]
BLAST of MELO3C035570.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 87/127 (68.50%), Postives = 96/127 (75.59%), Query Frame = 0 

Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI G N+HASTIDSRIKLLKRMFHAL EMRGP CSGFGWNDE+K IVAEKE     
Sbjct: 47  MMAFKIPGCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE----- 106

Query: 61  VKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNPIGYEAFTADAVSNM 120
             SHPAAKGLLNKSF+HYDELSY+       G   E FAD+ SN+P GY+AF ADA  + 
Sbjct: 107 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDT 166

Query: 121 DFQPMYS 124
           +F PMYS
Sbjct: 167 NFSPMYS 166

[Close]
BLAST of MELO3C035570.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 136.7 bits (343), Expect = 5.2e-29
Identity = 75/129 (58.14%), Postives = 87/129 (67.44%), Query Frame = 0 

Query: 1   MMTFKILGSNVHAST-IDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDD 60
           MM  K+ G  V A+T ID RIK LKR F A+ EM GP CSGFGWNDE+K IVAEKE+FD+
Sbjct: 368 MMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDN 427

Query: 61  LVKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNP-IGYEAFTADAVS 120
            V+S PAAKGLLN  F +YDEL+Y+       GR  ETFADV SN P  GY+ F      
Sbjct: 428 WVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDM-GDG 487

Query: 121 NMDFQPMYS 124
           N DF P+YS
Sbjct: 488 NEDFPPVYS 495

[Close]
BLAST of MELO3C035570.2 vs. NCBI nr
Match: XP_016899497.1 (PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 0 

Query: 1   MMTFKILGSNVHAST-IDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDD 60
           MM  K+ G  VHA+T IDSRIK LK+ F A+ EMRGP CSG GWND++K I+AEK +FD+
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  LVKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADV 98
            V+S+PAAK LLNK F +YDEL+Y+       GR  ETFADV
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFADV 102

[Close]
BLAST of MELO3C035570.2 vs. TAIR10
Match: AT4G02210.1 (unknown protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-05
Identity = 21/73 (28.77%), Postives = 40/73 (54.79%), Query Frame = 0 

Query: 16  IDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSF 75
           + +R K L+ +F ++  +      GF W+D ++ +VA+  V+D+ +K HP ++    KS 
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 76  LHYDELSYISCDG 89
             Y +L  +  DG
Sbjct: 126 PCYKDLCLVYSDG 136

[Close]
BLAST of MELO3C035570.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.2e-47
Identity = 93/127 (73.23%), Postives = 104/127 (81.89%), Query Frame = 0 

Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSN+HASTIDSRIKL+KRMFHAL EMRGP CSGFGWNDE+K IVAEKEVFDD 
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNPIGYEAFTADAVSNM 120
           VKSHP AKGLLNKSF+HYDELSY+       G   E+FAD+ SN+P GY+AF ADA+ + 
Sbjct: 107 VKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDT 166

Query: 121 DFQPMYS 124
           DF PMYS
Sbjct: 167 DFPPMYS 173

[Close]
BLAST of MELO3C035570.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 91/127 (71.65%), Postives = 102/127 (80.31%), Query Frame = 0 

Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSN+HASTIDSRIKL+KRMFHAL EMRGP CSGFGWNDE+K IVAEKEVFDD 
Sbjct: 406 MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 465

Query: 61  VKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNPIGYEAFTADAVSNM 120
             SHPAAKGLLNKSF+HYDELSY+       G   E+FAD+ SN+P GY+A  ADA+ + 
Sbjct: 466 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 525

Query: 121 DFQPMYS 124
           DF PMYS
Sbjct: 526 DFPPMYS 530

[Close]
BLAST of MELO3C035570.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.7e-41
Identity = 87/127 (68.50%), Postives = 96/127 (75.59%), Query Frame = 0 

Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI G N+HASTIDSRIKLLKRMFHAL EMRGP CSGFGWNDE+K IVAEKE     
Sbjct: 47  MMAFKIPGCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE----- 106

Query: 61  VKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNPIGYEAFTADAVSNM 120
             SHPAAKGLLNKSF+HYDELSY+       G   E FAD+ SN+P GY+AF ADA  + 
Sbjct: 107 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDT 166

Query: 121 DFQPMYS 124
           +F PMYS
Sbjct: 167 NFSPMYS 166

[Close]
BLAST of MELO3C035570.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-29
Identity = 75/129 (58.14%), Postives = 87/129 (67.44%), Query Frame = 0 

Query: 1   MMTFKILGSNVHAST-IDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDD 60
           MM  K+ G  V A+T ID RIK LKR F A+ EM GP CSGFGWNDE+K IVAEKE+FD+
Sbjct: 368 MMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDN 427

Query: 61  LVKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADVRSNNP-IGYEAFTADAVS 120
            V+S PAAKGLLN  F +YDEL+Y+       GR  ETFADV SN P  GY+ F      
Sbjct: 428 WVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDM-GDG 487

Query: 121 NMDFQPMYS 124
           N DF P+YS
Sbjct: 488 NEDFPPVYS 495

[Close]
BLAST of MELO3C035570.2 vs. TrEMBL
Match: tr|A0A1S4DU21|A0A1S4DU21_CUCME (uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 0 

Query: 1   MMTFKILGSNVHAST-IDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDD 60
           MM  K+ G  VHA+T IDSRIK LK+ F A+ EMRGP CSG GWND++K I+AEK +FD+
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  LVKSHPAAKGLLNKSFLHYDELSYI----SCDGRPVETFADV 98
            V+S+PAAK LLNK F +YDEL+Y+       GR  ETFADV
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFADV 102

The following BLAST results are available for this feature:
BLAST of MELO3C035570.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008466949.11.2e-4673.23PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
ADN34114.11.7e-4371.65retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008459131.11.0e-4068.50PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
ADN33754.15.2e-2958.14retrotransposon protein [Cucumis melo subsp. melo][more]
XP_016899497.12.3e-2459.80PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo][more]
BLAST of MELO3C035570.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G02210.14.9e-0528.77unknown protein[more]
BLAST of MELO3C035570.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035570.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME8.2e-4773.23uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME1.1e-4371.65Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME6.7e-4168.50uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|E5GBB2|E5GBB2_CUCME3.5e-2958.14Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DU21|A0A1S4DU21_CUCME1.5e-2459.80uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035570.2.1MELO3C035570.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704:SF62SUBFAMILY NOT NAMEDcoord: 5..95
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 5..95

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035570.2Wax gourdmedwgoB176
MELO3C035570.2Cucumber (Gy14) v2cgybmedB009
MELO3C035570.2Cucumber (Gy14) v1cgymedB361
MELO3C035570.2Cucurbita maxima (Rimu)cmamedB161
MELO3C035570.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035570.2Cucurbita moschata (Rifu)cmomedB151
MELO3C035570.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035570.2Cucurbita pepo (Zucchini)cpemedB557
MELO3C035570.2Cucurbita pepo (Zucchini)cpemedB881
MELO3C035570.2Wild cucumber (PI 183967)cpimedB011
MELO3C035570.2Cucumber (Chinese Long) v2cumedB010
MELO3C035570.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035570.2Watermelon (Charleston Gray)medwcgB133
MELO3C035570.2Watermelon (97103) v1medwmB155
MELO3C035570.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035570.2Watermelon (97103) v2medwmbB132