MELO3C035560.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035560.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr12 : 9720218 .. 9720560 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGGTTTGTTGAGCATCAGATGCTCATCACTTTTAAAGAGTTTCGAACCGACTGTCATAGACACTTTAAAAAGTACAGTGACCCTGAGGAGGCTCGTGCCAACCCTCCAAACATATTGGTTGGACGTCATGAGGATTGGTACTTCCTCTGGGATCACTACGTGAGTCGTGCATTCCAGGTATTTATCATGCTTAATTATGATTTCAATTTTTAATATGTATAAGAAATAAATAATATAATTGTTTTCATGTAGGAGCAATCACGGACAAACAAGGCTGCTAGACAGAAGCAACCTTACAATCATAACAGTGGGTCAAAGTTGTTTCTACAATGACAGC

mRNA sequence

ATGAATAGGTTTGTTGAGCATCAGATGCTCATCACTTTTAAAGAGTTTCGAACCGACTGTCATAGACACTTTAAAAAGTACAGTGACCCTGAGGAGGCTCGTGCCAACCCTCCAAACATATTGGTTGGACGTCATGAGGATTGGTACTTCCTCTGGGATCACTACGTGAGTCGTGCATTCCAGGAGCAATCACGGACAAACAAGGCTGCTAGACAGAAGCAACCTTACAATCATAACAGTGGGTCAAAGTTGTTTCTACAATGACAGC

Coding sequence (CDS)

ATGAATAGGTTTGTTGAGCATCAGATGCTCATCACTTTTAAAGAGTTTCGAACCGACTGTCATAGACACTTTAAAAAGTACAGTGACCCTGAGGAGGCTCGTGCCAACCCTCCAAACATATTGGTTGGACGTCATGAGGATTGGTACTTCCTCTGGGATCACTACGTGAGTCGTGCATTCCAGGAGCAATCACGGACAAACAAGGCTGCTAGACAGAAGCAACCTTACAATCATAACAGTGGGTCAAAGTTGTTTCTACAATGA

Protein sequence

MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAFQEQSRTNKAARQKQPYNHNSGSKLFLQ

Homology

[Close]

BLAST of MELO3C035560.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 162.9 bits (411), Expect = 4.8e-37
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAF 60
           MNRFVEHQM+ TFKEF+ DCHRHFKKYSDPEEARANPPN LVGR EDW+FL+DHY+ RAF
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAF 185

Query: 61  QEQSRTNKAARQKQPYNHNSGSKLFLQ 88
           QEQS TNKAARQKQPYNH+SGSK FLQ
Sbjct: 186 QEQSWTNKAARQKQPYNHSSGSKSFLQ 212

[Close]

BLAST of MELO3C035560.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAF 60
           MN  VE+QM  TFKEF  DCH+ FKKYSDPEEARANPPN+LVGR+EDW+FL+DHY+S AF
Sbjct: 139 MNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNEDWHFLYDHYMSHAF 198

Query: 61  Q 62
           Q
Sbjct: 199 Q 199

[Close]

BLAST of MELO3C035560.2 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 9.7e-14
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAF 60
           +N+F+E QM I+FK++R+D H+++ ++ DP EARANPP  L    EDW  L D + +  +
Sbjct: 30  VNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLT-NPEDWNHLCDRWETPEW 89

Query: 61  QEQSRTNKAARQKQPYNHNSGSKLFLQ 88
           +E ++ NK  R K P+NH +GSK FLQ
Sbjct: 90  KEITKKNKKNRAKLPFNHRAGSKSFLQ 115

[Close]

BLAST of MELO3C035560.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 7.7e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHED 48
           +NRFVEHQML TFKEF  DCHRHFK      EARANPPN+LVGRHED
Sbjct: 135 INRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C035560.2 vs. NCBI nr
Match: XP_019078959.1 (PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAF 60
           + + +E Q+   F+ +R D H+HFKK+    EA+ N P+  V   EDW +L D + S  F
Sbjct: 109 VKKSLEKQLSDRFRNWRCDLHKHFKKFPTVVEAKRN-PHESVSNQEDWDYLCDRFSSEEF 168

Query: 61  QEQSRTNKAARQKQPYNHNSGSKLFLQ 88
           + +S  N   R K P++H  GS+ F+Q
Sbjct: 169 KRRSAINSVNRSKMPFHHRGGSRSFIQ 194

[Close]

BLAST of MELO3C035560.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-37
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAF 60
           MNRFVEHQM+ TFKEF+ DCHRHFKKYSDPEEARANPPN LVGR EDW+FL+DHY+ RAF
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAF 185

Query: 61  QEQSRTNKAARQKQPYNHNSGSKLFLQ 88
           QEQS TNKAARQKQPYNH+SGSK FLQ
Sbjct: 186 QEQSWTNKAARQKQPYNHSSGSKSFLQ 212

[Close]

BLAST of MELO3C035560.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAF 60
           MN  VE+QM  TFKEF  DCH+ FKKYSDPEEARANPPN+LVGR+EDW+FL+DHY+S AF
Sbjct: 139 MNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNEDWHFLYDHYMSHAF 198

Query: 61  Q 62
           Q
Sbjct: 199 Q 199

[Close]

BLAST of MELO3C035560.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MNRFVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHED 48
           +NRFVEHQML TFKEF  DCHRHFK      EARANPPN+LVGRHED
Sbjct: 135 INRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C035560.2 vs. TrEMBL
Match: tr|A0A251PB03|A0A251PB03_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G199500 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 4   FVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRH--EDWYFLWDHYVSRAFQ 63
           +++  M   F++F+ + H+HF+ +S PEEA ANPP  ++ R    +W +L DH+ S+ F 
Sbjct: 226 YIDLVMARRFRDFKHELHKHFQLFSSPEEALANPPLEIIERDAVHEWEYLCDHFQSQDFL 285

Query: 64  EQSRTNKAARQKQPYNHNSGSKLF 86
             S  NKA R K+   H +GS  F
Sbjct: 286 RASNANKANRSKKKMEHRAGSLSF 309

[Close]

BLAST of MELO3C035560.2 vs. TrEMBL
Match: tr|A0A2H5Q237|A0A2H5Q237_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188460 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 4  FVEHQMLITFKEFRTDCHRHFKKYSDPEEARANPPNILVGRHEDWYFLWDHYVSRAFQEQ 63
          +V H M+  + + R +CH+HFKKY+ P EAR +    +    +DW +L +H+ S  F+E+
Sbjct: 9  YVTHSMVERYLDHRYNCHKHFKKYATPSEARQHAYKNI--SQQDWDWLCNHFESDKFKEK 68

Query: 64 SRTNKAARQKQPYNHNSGSKLF 86
           R N   R+K  YNH  GS  F
Sbjct: 69 VRKNVDNRKKLKYNHRGGSLSF 88

The following BLAST results are available for this feature:

BLAST of MELO3C035560.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	4.8e-37	85.06	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901155.1	1.6e-19	75.41	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]
XP_022156286.1	9.7e-14	45.98	uncharacterized protein LOC111023212 [Momordica charantia]	[more]
XP_016901035.1	7.7e-11	76.60	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_019078959.1	2.1e-08	36.78	PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera]	[more]

BLAST of MELO3C035560.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035560.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035560.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	3.2e-37	85.06	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	1.0e-19	75.41	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	5.1e-11	76.60	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A251PB03\|A0A251PB03_PRUPE	1.8e-08	38.10	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G199500 PE=4 SV=1	[more]
tr\|A0A2H5Q237\|A0A2H5Q237_CITUN	1.2e-07	39.02	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188460 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004252	Probable_transposase_24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035560.2.1	MELO3C035560.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 47..85 e-value: 1.1E-4 score: 22.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..87
None	No IPR available	PANTHER	PTHR33499	FAMILY NOT NAMED	coord: 7..87

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035560.2	Watermelon (97103) v2	medwmbB132
MELO3C035560.2	Wax gourd	medwgoB176
MELO3C035560.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035560.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035560.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035560.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035560.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C035560.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035560.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035560.2	Cucurbita pepo (Zucchini)	cpemedB881
MELO3C035560.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035560.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035560.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035560.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035560.2	Watermelon (97103) v1	medwmB157
MELO3C035560.2	Silver-seed gourd	carmedB0174
MELO3C035560.2	Cucumber (Chinese Long) v3	cucmedB009