MELO3C035546.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C035546.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionpheophorbide a oxygenase, chloroplastic
Locationchr12 : 8502898 .. 8504894 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGTATGGATTTGCTCCTTCAATGTGTTAATGGGTCCTGGAAAAACTTGTATGTAGTGCTCGAAACTTCTTCCAGTTTTCAATGCCCGGACTTGCTTGGTGGCAAGTAAGCAGTCCGTGTTAATTAAATCTCTTTCTCATTTTTATGATATATTATAGTCTCTACAGTTATTGAGCATTCAATATGCAGTAATATGTTCCGATATTACAGTGTTTGACTTCCTAAGTTTGCTTTCTCTATTTGGTGGTTCCTTGATGGCACGAGCATTGGACTTCAAATAAGGTATATGATAGAGACATGATTGTTCTTCAGGGTCAGGAGAAGATAAATATCAATGGAAGGTTTGGACAGATATAAATAAAAATAAACTAAAATAACGTTTACACCAACACAAGCGGAAACTTTTGGTTGTAGCATTTTGAAATTGGCTGAGGCGCCACGGAAAAGGCCAACCTGAATGGTTCAGGACTAGCAGCCAACAGCCTCTGCCATCAACAGTTCTATCTAAACGTCAGGTACTGAAAATTACCAGCATCTGGATTGTTTTGAAATTGACTAGAATGTCCGTGTACAATTCGTCCAATTTCTGTAACTACTATAAGTTTGGAAGTCTAATTTTAATAATCGTAAGTTTAAGGTCTTAATTTTTATTATTAAAAATAAGTGTGGTTGATGAGATTATTATCATCTCCGCTACAGATGGACAGATTTGAGCAACACACACTTAATTGTCCATCTTGTAAAGGAGCTTAGGAAACATTTCAAACAGTGCAAAGGCTCCTAATTGGGGCAACTGTAGTTTTCGCGGCCACCACAGGTATCCCTTGTGCTGTACAGATACACATATTCTTCTTGCCAGTCTTGCACTCGCAAGCGTCGGCTTGGCTTAGGCTCGGTTTGAACTTCAAAAAGAATTTTGTGTTCATTGACTATGTTCATGCAGAGATTGATTAGAAGATACCATTAGAGATTGAGAGAGAAATATTGTTGTTTAGAGGAGGATTTTAATCAAGTAATGTATAGTTTTACAAAGATATCGTAGTTGAACTGTGCGAAATGAAACTAGAGACGAATATGTCTTCGTTTTGTTTGGTTGTATTCTTGTTACAGCCATTAATTTTGATATTGTTCCAATTCAGTTTTATTTTAGGACTAATGACGTTAGTTGTTGATGTAACAAAACTTTGATTTTGAGTACATGACTCCACTGATAATTCTTGAATGTATGTTTAAAACCGCATTACTTGTATTAATTGTTTGAGTCCCTAACCATAGTACTCAAAGCAGTGAAGTTATTTGAAAGCTGGCATAGTTTAACATTATTGACCAAGAAGTTTTTAATATAAATCTTTACTTTTTATTGTATTCTTAAAAAAGTAAAAAGTAATTTACCCTTTTGTTACAAAAATATATAATTTGGCTTAAACTTATAGTTGAATTTGGTTTTTATATTTTCCAAAAAGTGCTTTTGTTCTTTAATTATTTATACCTTATATTTTTTTTACTAGTTAGGTTGTTAGGTAAAGATTTTACGAATATAGCTACAGAAATTCAAGAGTGATCATTTGGTCTTAAGTGTCTTGTCAAAATATACCAATACCATAAAATTGCAGTTTTTGTACCAATGATAATATGTCAAAATGGTACCCCCTTACCAATTTTACAATATTATTGTTTGATCTTACATAATTGTTTGATTGTATTTCTAAAGTAAAACTCTTGTATTTCTAATGAAGTTTTCACGATTCTATAGTTCTTACATTTACTACACAATCGTGCAAACATATTAAAATATCATTTAATTAAGGGTGCTCGATGGTTTAGTGTAGAGTTGCACCATCATTTAGTGGAAGCTCACTGATTACAAAGACTTTATTGCCCAGCTGTGCACTTTTAGTTAGAATGTGTAGTAAAGTAAGACTCTCCGCGATTGCTCAGTGTAGGGTTGACAATGGTCATGCTTTAATATTTGTACAATTTGGTGGAGAATGA

mRNA sequence

ATGGGTAGTATGGATTTGCTCCTTCAATGTGTTAATGGGTCCTGGAAAAACTTGTATGTAGTGCTCGAAACTTCTTCCAGTTTTCAATGCCCGGACTTGCTTGGTGGCAAGCGCCACGGAAAAGGCCAACCTGAATGGTTCAGGACTAGCAGCCAACAGCCTCTGCCATCAACAGTTCTATCTAAACGTCAGGAAACATTTCAAACAGTGCAAAGGCTCCTAATTGGGGCAACTGTAGTTTTCGCGGCCACCACAGGTATCCCTTGTGCTGTACAGATACACATATTCTTCTTGCCAGTCTTGCACTCGCAAGCGTCGGCTTGGCTTAGGCTCGCCATTAATTTTGATATTGTTCCAATTCAGTTTTATTTTAGGACTAATGACTGTAGAGTTGCACCATCATTTAGTGGAAGCTCACTGATTACAAAGACTTTATTGCCCAGCTGTGCACTTTTAGTTAGAATGTGTAGTAAAGTAAGACTCTCCGCGATTGCTCAGTGTAGGGTTGACAATGGTCATGCTTTAATATTTGTACAATTTGGTGGAGAATGA

Coding sequence (CDS)

ATGGGTAGTATGGATTTGCTCCTTCAATGTGTTAATGGGTCCTGGAAAAACTTGTATGTAGTGCTCGAAACTTCTTCCAGTTTTCAATGCCCGGACTTGCTTGGTGGCAAGCGCCACGGAAAAGGCCAACCTGAATGGTTCAGGACTAGCAGCCAACAGCCTCTGCCATCAACAGTTCTATCTAAACGTCAGGAAACATTTCAAACAGTGCAAAGGCTCCTAATTGGGGCAACTGTAGTTTTCGCGGCCACCACAGGTATCCCTTGTGCTGTACAGATACACATATTCTTCTTGCCAGTCTTGCACTCGCAAGCGTCGGCTTGGCTTAGGCTCGCCATTAATTTTGATATTGTTCCAATTCAGTTTTATTTTAGGACTAATGACTGTAGAGTTGCACCATCATTTAGTGGAAGCTCACTGATTACAAAGACTTTATTGCCCAGCTGTGCACTTTTAGTTAGAATGTGTAGTAAAGTAAGACTCTCCGCGATTGCTCAGTGTAGGGTTGACAATGGTCATGCTTTAATATTTGTACAATTTGGTGGAGAATGA

Protein sequence

MGSMDLLLQCVNGSWKNLYVVLETSSSFQCPDLLGGKRHGKGQPEWFRTSSQQPLPSTVLSKRQETFQTVQRLLIGATVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAINFDIVPIQFYFRTNDCRVAPSFSGSSLITKTLLPSCALLVRMCSKVRLSAIAQCRVDNGHALIFVQFGGE
BLAST of MELO3C035546.2 vs. NCBI nr
Match: XP_008462467.1 (PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-15
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWFR SSQQPLPSTVLSKRQ                   +TFQTVQRLLIGA
Sbjct: 434 RRHGKGQPEWFRASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGA 493

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVF+AT GIP ++QI +    +  + ASA L  A+
Sbjct: 494 TVVFSATAGIPSSLQIRVLLASL--ALASAGLAYAL 527

BLAST of MELO3C035546.2 vs. NCBI nr
Match: XP_011654100.1 (PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-15
Identity = 56/96 (58.33%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQTVQRLLIGA
Sbjct: 435 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTXIVSSCKGAYKTFQTVQRLLIGA 494

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVFAAT GIP A+QI I    +  + ASA L  A+
Sbjct: 495 TVVFAATAGIPSALQIRILLASL--ALASAGLAYAL 528

BLAST of MELO3C035546.2 vs. NCBI nr
Match: XP_022964963.1 (pheophorbide a oxygenase, chloroplastic [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 434 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 493

BLAST of MELO3C035546.2 vs. NCBI nr
Match: XP_022970307.1 (pheophorbide a oxygenase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 434 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 493

BLAST of MELO3C035546.2 vs. NCBI nr
Match: XP_023519435.1 (pheophorbide a oxygenase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  S+QQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 435 RRHGKGQPEWFGASNQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 494

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVFAAT GIP A+Q+ I    +  + ASA L  A+
Sbjct: 495 TVVFAATAGIPSALQMRILLAAL--ALASAGLAYAL 528

BLAST of MELO3C035546.2 vs. TAIR10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-11
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 37  KRHGKGQPEWF-RTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIG 96
           +RHGK QPEWF  T S QPLPSTVL+KRQ                    +FQ +++ L+G
Sbjct: 425 RRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVG 484

Query: 97  ATVVFAATTGIPCAVQIHIFFLPV-LHSQASAW 109
           ATV +AAT G+P  VQI +    + L S ASA+
Sbjct: 485 ATVFWAATAGVPSDVQIRLVLAGLSLISAASAY 517

BLAST of MELO3C035546.2 vs. Swiss-Prot
Match: sp|Q9FYC2|PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 37  KRHGKGQPEWF-RTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIG 96
           +RHGK QPEWF  T S QPLPSTVL+KRQ                    +FQ +++ L+G
Sbjct: 425 RRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVG 484

Query: 97  ATVVFAATTGIPCAVQIHIFFLPV-LHSQASAW 109
           ATV +AAT G+P  VQI +    + L S ASA+
Sbjct: 485 ATVFWAATAGVPSDVQIRLVLAGLSLISAASAY 517

BLAST of MELO3C035546.2 vs. TrEMBL
Match: tr|A0A1S3CII7|A0A1S3CII7_CUCME (pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWFR SSQQPLPSTVLSKRQ                   +TFQTVQRLLIGA
Sbjct: 434 RRHGKGQPEWFRASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGA 493

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVF+AT GIP ++QI +    +  + ASA L  A+
Sbjct: 494 TVVFSATAGIPSSLQIRVLLASL--ALASAGLAYAL 527

BLAST of MELO3C035546.2 vs. TrEMBL
Match: tr|A0A151TNL8|A0A151TNL8_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_022243 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHG GQPEWF +SS QPLPSTVLSKRQ                   E FQT Q++LIGA
Sbjct: 424 RRHGNGQPEWFGSSSDQPLPSTVLSKRQMLDRFEQHTLKCSSCKGAYEGFQTWQKILIGA 483

Query: 97  TVVFAATTGIPCAVQIHIFFLP---VLHSQASAWLRLAINFDIV 119
           TVVF AT+GIP  VQ+ +       V  + A A  +L  NF+ V
Sbjct: 484 TVVFCATSGIPSDVQLRVLLAGLAIVSAAFAFALNQLQKNFEFV 527

BLAST of MELO3C035546.2 vs. TrEMBL
Match: tr|Q0H950|Q0H950_SOYBN (Lethal leaf spot 1-like protein OS=Glycine max OX=3847 GN=778121 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.2e-11
Identity = 46/97 (47.42%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHG GQPEWF  SS QPLPSTVLSKRQ                   E FQT Q++LIG 
Sbjct: 452 RRHGNGQPEWFGNSSDQPLPSTVLSKRQMLDRFEQHTLKCSSCKAAYEGFQTWQKVLIGT 511

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAIN 115
           TVVF AT+GIP  VQ+ +    +  +  SA +  A+N
Sbjct: 512 TVVFCATSGIPSDVQLRVLLAGL--AIVSAAITFALN 546

BLAST of MELO3C035546.2 vs. TrEMBL
Match: tr|I1LKY8|I1LKY8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100812162 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.2e-11
Identity = 46/97 (47.42%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHG GQPEWF  SS QPLPSTVLSKRQ                   E FQT Q++LIGA
Sbjct: 434 RRHGNGQPEWFGNSSDQPLPSTVLSKRQMLDRFEQHTLKCSSCKAAYEGFQTWQKVLIGA 493

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAIN 115
           TVVF AT+GIP   Q+ +    +  +  SA +  A+N
Sbjct: 494 TVVFCATSGIPSDFQLRVLLAGL--AVVSAAIAFALN 528

BLAST of MELO3C035546.2 vs. TrEMBL
Match: tr|G7JM88|G7JM88_MEDTR (Lethal leaf-spot protein, putative OS=Medicago truncatula OX=3880 GN=11411058 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 47/97 (48.45%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHG GQPEWF  SS QPLPSTVLSKRQ                   E FQT Q++L GA
Sbjct: 431 RRHGNGQPEWFGKSSSQPLPSTVLSKRQMLDRFEQHTLKCSACKGAYEGFQTWQKILTGA 490

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAIN 115
           TVVF AT+GIP   Q+ I    +  +  SA L  +IN
Sbjct: 491 TVVFCATSGIPSDTQLRIILAAL--ALVSAALAFSIN 525

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008462467.12.9e-1556.25PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo][more]
XP_011654100.12.9e-1558.33PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis... [more]
XP_022964963.17.0e-1461.54pheophorbide a oxygenase, chloroplastic [Cucurbita moschata][more]
XP_022970307.17.0e-1461.54pheophorbide a oxygenase, chloroplastic [Cucurbita maxima][more]
XP_023519435.17.0e-1454.17pheophorbide a oxygenase, chloroplastic [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT3G44880.12.3e-1145.16Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain[more]
Match NameE-valueIdentityDescription
sp|Q9FYC2|PAO_ARATH4.2e-1045.16Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO P... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CII7|A0A1S3CII7_CUCME1.9e-1556.25pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 ... [more]
tr|A0A151TNL8|A0A151TNL8_CAJCA2.2e-1148.08Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_022243 PE=4 SV=1[more]
tr|Q0H950|Q0H950_SOYBN8.2e-1147.42Lethal leaf spot 1-like protein OS=Glycine max OX=3847 GN=778121 PE=2 SV=1[more]
tr|I1LKY8|I1LKY8_SOYBN8.2e-1147.42Uncharacterized protein OS=Glycine max OX=3847 GN=100812162 PE=4 SV=1[more]
tr|G7JM88|G7JM88_MEDTR1.1e-1048.45Lethal leaf-spot protein, putative OS=Medicago truncatula OX=3880 GN=11411058 PE... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0010277 chlorophyllide a oxygenase [overall] activity
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035546.2.1MELO3C035546.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21266:SF24PHEOPHORBIDE A OXYGENASE, CHLOROPLASTICcoord: 64..107
NoneNo IPR availablePANTHERPTHR21266IRON-SULFUR DOMAIN CONTAINING PROTEINcoord: 64..107
NoneNo IPR availablePANTHERPTHR21266IRON-SULFUR DOMAIN CONTAINING PROTEINcoord: 37..64
NoneNo IPR availablePANTHERPTHR21266:SF24PHEOPHORBIDE A OXYGENASE, CHLOROPLASTICcoord: 37..64

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None