MELO3C035545.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035545.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr12 : 8527931 .. 8528152 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAAGCAAAGAAATCAACGATCCAGAACAGTCATCCTGCATTTTTACACGAGAAACCCCTAAAACCTATCAATCTAAGAGCTAGTGAACTTAGTAACGGCCTTGGTACCCTCAGAGACGGCGTGTTTAGCCAGCTCACCAGGAAGAACAAGGCGCACCGCCGTTTGGATCTCCCGAGAGGTGATAGTCGGCTTCTTGTTGTAGCGAGCGAGCTTTGA

mRNA sequence

ATGCAACAAGCAAAGAAATCAACGATCCAGAACAGTCATCCTGCATTTTTACACGAGAAACCCCTAAAACCTATCAATCTAAGAGCTAGTGAACTTAGTAACGGCCTTGGTACCCTCAGAGACGGCGTGTTTAGCCAGCTCACCAGGAAGAACAAGGCGCACCGCCGTTTGGATCTCCCGAGAGGTGATAGTCGGCTTCTTGTTGTAGCGAGCGAGCTTTGA

Coding sequence (CDS)

ATGCAACAAGCAAAGAAATCAACGATCCAGAACAGTCATCCTGCATTTTTACACGAGAAACCCCTAAAACCTATCAATCTAAGAGCTAGTGAACTTAGTAACGGCCTTGGTACCCTCAGAGACGGCGTGTTTAGCCAGCTCACCAGGAAGAACAAGGCGCACCGCCGTTTGGATCTCCCGAGAGGTGATAGTCGGCTTCTTGTTGTAGCGAGCGAGCTTTGA

Protein sequence

MQQAKKSTIQNSHPAFLHEKPLKPINLRASELSNGLGTLRDGVFSQLTRKNKAHRRLDLPRGDSRLLVVASEL

Homology

[Close]

BLAST of MELO3C035545.2 vs. NCBI nr
Match: ACU13433.1 (unknown, partial [Glycine max])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 18 HEKPLKPINLRASELSNGLGTLRDGVFSQLTRKNKAHRRLDLPRGDSRLLVVASE 73
          H +   P N RA +L N LG  R+GVF Q TR+++ H  LDLPRGD  LLVVAS+
Sbjct: 34 HNRLTNP-NSRAGKLGNRLGPFRNGVFGQFTREHETHGGLDLPRGDGGLLVVASQ 87

[Close]

BLAST of MELO3C035545.2 vs. NCBI nr
Match: ACU14868.1 (unknown, partial [Glycine max])

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 15 AFLHEKPLKPINLRASELSNGLGTLRDGVFSQLTRKNKAHRRLDLPRGDSRLLVVASE 73
          +F  +K  K + LRASEL NG G+ R+GV  +L  +++  R L+LP G+SRLLVV  E
Sbjct: 21 SFTEKKKKKTLTLRASELGNGFGSFRNGVLGKLPGQHQPDRGLNLPGGNSRLLVVPGE 78

[Close]

BLAST of MELO3C035545.2 vs. TrEMBL
Match: tr|C6SW10|C6SW10_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-06
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 18 HEKPLKPINLRASELSNGLGTLRDGVFSQLTRKNKAHRRLDLPRGDSRLLVVASE 73
          H +   P N RA +L N LG  R+GVF Q TR+++ H  LDLPRGD  LLVVAS+
Sbjct: 34 HNRLTNP-NSRAGKLGNRLGPFRNGVFGQFTREHETHGGLDLPRGDGGLLVVASQ 87

[Close]

BLAST of MELO3C035545.2 vs. TrEMBL
Match: tr|C6T045|C6T045_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-05
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 15 AFLHEKPLKPINLRASELSNGLGTLRDGVFSQLTRKNKAHRRLDLPRGDSRLLVVASE 73
          +F  +K  K + LRASEL NG G+ R+GV  +L  +++  R L+LP G+SRLLVV  E
Sbjct: 21 SFTEKKKKKTLTLRASELGNGFGSFRNGVLGKLPGQHQPDRGLNLPGGNSRLLVVPGE 78

[Close]

BLAST of MELO3C035545.2 vs. TrEMBL
Match: tr|H3FUA9|H3FUA9_PRIPA (Uncharacterized protein OS=Pristionchus pacificus OX=54126 GN=WBGene00115443 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-04
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 28 RASELSNGLGTLRDGVFSQLTRKNKAHRRLDLPRGDSRLLVVASE 73
          R S L +GLG LRDG  SQL+R+++A RRLD  R D R LVV SE
Sbjct: 4  RGSVLGHGLGALRDGELSQLSREDEADRRLDFARRDGRSLVVVSE 48

The following BLAST results are available for this feature:

BLAST of MELO3C035545.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ACU13433.1	1.4e-05	54.55	unknown, partial [Glycine max]	[more]
ACU14868.1	4.1e-05	48.28	unknown, partial [Glycine max]	[more]

BLAST of MELO3C035545.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035545.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035545.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|C6SW10\|C6SW10_SOYBN	9.2e-06	54.55	Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
tr\|C6T045\|C6T045_SOYBN	2.7e-05	48.28	Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
tr\|H3FUA9\|H3FUA9_PRIPA	3.0e-04	60.00	Uncharacterized protein OS=Pristionchus pacificus OX=54126 GN=WBGene00115443 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035545.2.1	MELO3C035545.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035545.2	Silver-seed gourd	carmedB0174
MELO3C035545.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035545.2	Watermelon (97103) v2	medwmbB127
MELO3C035545.2	Wax gourd	medwgoB176
MELO3C035545.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035545.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035545.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035545.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035545.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C035545.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035545.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035545.2	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C035545.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035545.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035545.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035545.2	Watermelon (Charleston Gray)	medwcgB127
MELO3C035545.2	Watermelon (97103) v1	medwmB165