MELO3C035541.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035541.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPheophorbide a oxygenase
Locationchr12 : 8530442 .. 8530663 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCAATGGGTCCTGGAAAGATTCGTTCATCATATAAAGGAGCCTTATAAAACATTTCAACCTGTGCAAACGCTCCTAATTGGTGCAACTGTTGTTTCTGCGGCCACCATCGGTATCCCTTCTACTTTACAGATATGTATTCTTCTCGCCAGTCTCGCACTTGCAAGCGTCGTCTTTGCTTACGCTTTGTTTGAACTCCAAAACAATTTTGTTAACTGA

mRNA sequence

ATGTGCCAATGGGTCCTGGAAAGATTCGTTCATCATATAAAGGAGCCTTATAAAACATTTCAACCTGTGCAAACGCTCCTAATTGGTGCAACTGTTGTTTCTGCGGCCACCATCGGTATCCCTTCTACTTTACAGATATGTATTCTTCTCGCCAGTCTCGCACTTGCAAGCGTCGTCTTTGCTTACGCTTTGTTTGAACTCCAAAACAATTTTGTTAACTGA

Coding sequence (CDS)

ATGTGCCAATGGGTCCTGGAAAGATTCGTTCATCATATAAAGGAGCCTTATAAAACATTTCAACCTGTGCAAACGCTCCTAATTGGTGCAACTGTTGTTTCTGCGGCCACCATCGGTATCCCTTCTACTTTACAGATATGTATTCTTCTCGCCAGTCTCGCACTTGCAAGCGTCGTCTTTGCTTACGCTTTGTTTGAACTCCAAAACAATTTTGTTAACTGA

Protein sequence

MCQWVLERFVHHIKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASVVFAYALFELQNNFVN
Homology
[Close]
BLAST of MELO3C035541.2 vs. NCBI nr
Match: XP_011654100.1 (PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 51/74 (68.92%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K  YKTFQ VQ LLIGATVV AAT GIPS LQI ILLASLALAS 
Sbjct: 463 MLDRFEQHTXIVSSCKGAYKTFQTVQRLLIGATVVFAATAGIPSALQIRILLASLALASA 522

Query: 65  VFAYALFELQNNFV 73
             AYALFELQ NFV
Sbjct: 523 GLAYALFELQKNFV 536

[Close]
BLAST of MELO3C035541.2 vs. NCBI nr
Match: XP_008462467.1 (PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K  YKTFQ VQ LLIGATVV +AT GIPS+LQI +LLASLALAS 
Sbjct: 462 MLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGATVVFSATAGIPSSLQIRVLLASLALASA 521

Query: 65  VFAYALFELQNNFV 73
             AYALFELQ NFV
Sbjct: 522 GLAYALFELQKNFV 535

[Close]
BLAST of MELO3C035541.2 vs. NCBI nr
Match: XP_022152935.1 (pheophorbide a oxygenase, chloroplastic [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-11
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       +  YK+FQ +Q LLIGATVV AAT G+PSTLQI ILLA LALAS 
Sbjct: 464 MLDRFEQHTLHCSSCRGAYKSFQTLQKLLIGATVVFAATAGVPSTLQIRILLAGLALASA 523

Query: 65  VFAYALFELQNNFV 73
             AYALFELQ NFV
Sbjct: 524 GMAYALFELQKNFV 537

[Close]
BLAST of MELO3C035541.2 vs. NCBI nr
Match: XP_023519435.1 (pheophorbide a oxygenase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       +  YKTFQ +Q LLIGATVV AAT GIPS LQ+ ILLA+LALAS 
Sbjct: 463 MLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGATVVFAATAGIPSALQMRILLAALALASA 522

Query: 65  VFAYALFELQNNFV 73
             AYALFELQ NFV
Sbjct: 523 GLAYALFELQKNFV 536

[Close]
BLAST of MELO3C035541.2 vs. NCBI nr
Match: XP_022964963.1 (pheophorbide a oxygenase, chloroplastic [Cucurbita moschata])

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       +  YKTFQ +Q LLIGATVV AAT GIPS LQ+ ILLA+LAL S 
Sbjct: 462 MLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGATVVFAATAGIPSALQMRILLAALALTSA 521

Query: 65  VFAYALFELQNNFV 73
             AYALFELQ NFV
Sbjct: 522 GLAYALFELQKNFV 535

[Close]
BLAST of MELO3C035541.2 vs. TAIR10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-08
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K  Y +FQ ++  L+GATV  AAT G+PS +QI ++LA L+L S 
Sbjct: 454 MLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISA 513

Query: 65  VFAYALFELQNNFV 73
             AYAL E + NFV
Sbjct: 514 ASAYALHEQEKNFV 527

[Close]
BLAST of MELO3C035541.2 vs. Swiss-Prot
Match: sp|Q9FYC2|PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-07
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K  Y +FQ ++  L+GATV  AAT G+PS +QI ++LA L+L S 
Sbjct: 454 MLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISA 513

Query: 65  VFAYALFELQNNFV 73
             AYAL E + NFV
Sbjct: 514 ASAYALHEQEKNFV 527

[Close]
BLAST of MELO3C035541.2 vs. TrEMBL
Match: tr|A0A1S3CII7|A0A1S3CII7_CUCME (pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-12
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K  YKTFQ VQ LLIGATVV +AT GIPS+LQI +LLASLALAS 
Sbjct: 462 MLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGATVVFSATAGIPSSLQIRVLLASLALASA 521

Query: 65  VFAYALFELQNNFV 73
             AYALFELQ NFV
Sbjct: 522 GLAYALFELQKNFV 535

[Close]
BLAST of MELO3C035541.2 vs. TrEMBL
Match: tr|A0A067FAT0|A0A067FAT0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g009165mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 42/77 (54.55%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 2   CQWVLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLAL 61
           CQ +L+RF  H       +E Y  FQ  Q  LIGATV   AT GIPS LQ  I+LA LAL
Sbjct: 456 CQ-MLDRFEQHTLKCSSCREAYSAFQTGQKFLIGATVAFCATAGIPSDLQSRIVLAGLAL 515

Query: 62  ASVVFAYALFELQNNFV 73
            S   AYAL ELQ NFV
Sbjct: 516 VSAALAYALHELQKNFV 531

[Close]
BLAST of MELO3C035541.2 vs. TrEMBL
Match: tr|M5WRF3|M5WRF3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019738mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K+ Y  FQ  Q LLIGATVV  AT GIPS LQ+ I+LA  AL S 
Sbjct: 438 MLDRFEQHTLKCSSCKQAYTAFQTWQKLLIGATVVFCATAGIPSDLQLRIILAGFALLSA 497

Query: 65  VFAYALFELQNNFV 73
             AYAL EL+ NFV
Sbjct: 498 ALAYALRELEKNFV 511

[Close]
BLAST of MELO3C035541.2 vs. TrEMBL
Match: tr|A0A251NNR8|A0A251NNR8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G113600 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K+ Y  FQ  Q LLIGATVV  AT GIPS LQ+ I+LA  AL S 
Sbjct: 465 MLDRFEQHTLKCSSCKQAYTAFQTWQKLLIGATVVFCATAGIPSDLQLRIILAGFALLSA 524

Query: 65  VFAYALFELQNNFV 73
             AYAL EL+ NFV
Sbjct: 525 ALAYALRELEKNFV 538

[Close]
BLAST of MELO3C035541.2 vs. TrEMBL
Match: tr|A0A2G5DJX8|A0A2G5DJX8_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01900165v1 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 5   VLERFVHH------IKEPYKTFQPVQTLLIGATVVSAATIGIPSTLQICILLASLALASV 64
           +L+RF  H       K  Y  FQ +Q +LIGATV+  AT GIPS LQ+ I+L  LALAS 
Sbjct: 359 MLDRFEQHTLKCSSCKGAYTAFQTLQKVLIGATVIFCATAGIPSELQLRIVLCGLALASA 418

Query: 65  VFAYALFELQNNFV 73
             AYA+ ELQ NFV
Sbjct: 419 GLAYAVHELQKNFV 432

The following BLAST results are available for this feature:
BLAST of MELO3C035541.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654100.13.4e-1268.92PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis... [more]
XP_008462467.17.6e-1266.22PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo][more]
XP_022152935.15.0e-1163.51pheophorbide a oxygenase, chloroplastic [Momordica charantia][more]
XP_023519435.18.5e-1163.51pheophorbide a oxygenase, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022964963.12.5e-1062.16pheophorbide a oxygenase, chloroplastic [Cucurbita moschata][more]
BLAST of MELO3C035541.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44880.13.7e-0845.95Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain[more]
BLAST of MELO3C035541.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FYC2|PAO_ARATH6.6e-0745.95Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO P... [more]
BLAST of MELO3C035541.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CII7|A0A1S3CII7_CUCME5.1e-1266.22pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 ... [more]
tr|A0A067FAT0|A0A067FAT0_CITSI2.9e-0754.55Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g009165mg PE=4 SV=1[more]
tr|M5WRF3|M5WRF3_PRUPE3.8e-0754.05Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019738m... [more]
tr|A0A251NNR8|A0A251NNR8_PRUPE3.8e-0754.05Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G113600 PE=4 SV=1[more]
tr|A0A2G5DJX8|A0A2G5DJX8_AQUCA4.9e-0752.70Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01900165v1 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0010277 chlorophyllide a oxygenase [overall] activity
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035541.2.1MELO3C035541.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21266:SF24PHEOPHORBIDE A OXYGENASE, CHLOROPLASTICcoord: 13..72
NoneNo IPR availablePANTHERPTHR21266IRON-SULFUR DOMAIN CONTAINING PROTEINcoord: 13..72

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035541.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035541.2Watermelon (Charleston Gray)medwcgB127
MELO3C035541.2Watermelon (97103) v1medwmB165
MELO3C035541.2Silver-seed gourdcarmedB0174
MELO3C035541.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035541.2Watermelon (97103) v2medwmbB127
MELO3C035541.2Wax gourdmedwgoB176
MELO3C035541.2Cucumber (Gy14) v2cgybmedB009
MELO3C035541.2Cucumber (Gy14) v1cgymedB361
MELO3C035541.2Cucurbita maxima (Rimu)cmamedB161
MELO3C035541.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035541.2Cucurbita moschata (Rifu)cmomedB151
MELO3C035541.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035541.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035541.2Cucurbita pepo (Zucchini)cpemedB880
MELO3C035541.2Wild cucumber (PI 183967)cpimedB011
MELO3C035541.2Cucumber (Chinese Long) v2cumedB010