MELO3C035539.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035539.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	CACTA en-spm transposon protein
Location	chr12 : 8414711 .. 8416855 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGAGAGAGTATCGCCGTTCGCCACACGCTGTTCGTTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCTGTCCACTGTCTTAAGTGGGCGGATGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGGTAATTAAATGCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCATTATATCAGCCGTGCATTCCAGGTATTTGTCATGATTAATTATGATAACAAGTTTTAATATGTATAAGAAATAAACAATATAATTGTTTTAATGCAGGAGCAATCGCGGACGAACAAAGCTGCTAGACAGAAGCAGGCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTATAACGACAGTATGAGCTCGTTGAAAGAAGAGGGAAGCCGGTCGATCGTGTGGAATTATTCCGAGAAACACACGTTCGAGCTGGGACATTCGTGTCGCAGGCCGCCGAGGATGCGCATGTAAGTTATACCCTTATTAATTATCCACTTTCATTATATATTTTTGCGCGTTGCCTAACATAATTTTTAAATTTGTTGCAGAATCAAATGCTGGAACTCCAATCTCAGCCTACCCTAGAGGGTAGTCAGCCACTCTCTGAGGACGAGATATGCGATCAGGTGTTGGGTAGACGACGAGGCTACTCAAAAGGCCTTGGTTAGGGACCCAAGCCGAAGGCCTGCAGACCGGCGAGTGCAAGTAGTTCGTCGACATCTTGTTCGCAGTCCACAGAAAAAGAGATTGAACTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAGCTATGAAAAAGATGATAGAAGAACTAACTCGTGCACAACAGGGACCACCACATGATCCCTAG

mRNA sequence

ATGGATGTGAGAGAGTATCGCCGTTCGCCACACGCTGTTCGTTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCTGTCCACTGTCTTAAGTGGGCGGATGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGGAGCAATCGCGGACGAACAAAGCTGCTAGACAGAAGCAGGCTTACAATCATAGTAGCGGAAGAGGGAAGCCGGTCGATCGTGTGGAATTATTCCGAGAAACACACGTTCGAGCTGGGACATTCGTGTCGCAGGCCGCCGAGGATGCGCATAATCAAATGCTGGAACTCCAATCTCAGCCTACCCTAGAGGGTAGTCAGCCACTCTCTGAGGACGAGATATGCGATCAGGGACCCAAGCCGAAGGCCTGCAGACCGGCGAGTGCAAGTAGTTCGTCGACATCTTGTTCGCAGTCCACAGAAAAAGAGATTGAACTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAGCTATGAAAAAGATGATAGAAGAACTAACTCGTGCACAACAGGGACCACCACATGATCCCTAG

Coding sequence (CDS)

ATGGATGTGAGAGAGTATCGCCGTTCGCCACACGCTGTTCGTTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCTGTCCACTGTCTTAAGTGGGCGGATGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGGAGCAATCGCGGACGAACAAAGCTGCTAGACAGAAGCAGGCTTACAATCATAGTAGCGGAAGAGGGAAGCCGGTCGATCGTGTGGAATTATTCCGAGAAACACACGTTCGAGCTGGGACATTCGTGTCGCAGGCCGCCGAGGATGCGCATAATCAAATGCTGGAACTCCAATCTCAGCCTACCCTAGAGGGTAGTCAGCCACTCTCTGAGGACGAGATATGCGATCAGGGACCCAAGCCGAAGGCCTGCAGACCGGCGAGTGCAAGTAGTTCGTCGACATCTTGTTCGCAGTCCACAGAAAAAGAGATTGAACTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAGCTATGAAAAAGATGATAGAAGAACTAACTCGTGCACAACAGGGACCACCACATGATCCCTAG

Protein sequence

MDVREYRRSPHAVRFSQAIGVCVRKTFPVHCLKWADVGREYIEVVKGDLQEQSRTNKAARQKQAYNHSSGRGKPVDRVELFRETHVRAGTFVSQAAEDAHNQMLELQSQPTLEGSQPLSEDEICDQGPKPKACRPASASSSSTSCSQSTEKEIELQAKLHEALERIEVQDRNHQALASQVEAMKKMIEELTRAQQGPPHDP

Homology

[Close]

BLAST of MELO3C035539.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 176.0 bits (445), Expect = 1.3e-40
Identity = 107/203 (52.71%), Postives = 111/203 (54.68%), Query Frame = 0


Query: 9   SPHAVRFSQAIGVCVRKTFPVHCLKWADVGREYIEVVKGDL------------------- 68
           SP+AV FSQAIGVCVRKTFPV CLKW DVGREYIEVVKGDL                   
Sbjct: 73  SPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEH 132

Query: 69  -----------------------------------------------------QEQSRTN 126
                                                                QEQS TN
Sbjct: 133 QMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAFQEQSWTN 192

[Close]

BLAST of MELO3C035539.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 9.8e-09
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 10  PHAVRFSQAIGVCVRKTFPVHCLKWADVGREYIEVVKGDLQ 51
           P+A+RFSQAIGVCV+KTF V  LKWAD+ REYIEVVKG+LQ
Sbjct: 83  PYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQ 123

[Close]

BLAST of MELO3C035539.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 4.3e-04
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 9   SPHAVRFSQAIGVCVRKTFPVHCLKWADVGREYIEVVK 47
           SPH +RFS  I V  R TFP+  LKW DV +EYIEVVK
Sbjct: 762 SPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVK 799

[Close]

BLAST of MELO3C035539.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.4e-41
Identity = 107/203 (52.71%), Postives = 111/203 (54.68%), Query Frame = 0


Query: 9   SPHAVRFSQAIGVCVRKTFPVHCLKWADVGREYIEVVKGDL------------------- 68
           SP+AV FSQAIGVCVRKTFPV CLKW DVGREYIEVVKGDL                   
Sbjct: 73  SPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEH 132

Query: 69  -----------------------------------------------------QEQSRTN 126
                                                                QEQS TN
Sbjct: 133 QMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAFQEQSWTN 192

[Close]

BLAST of MELO3C035539.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.5e-09
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 10  PHAVRFSQAIGVCVRKTFPVHCLKWADVGREYIEVVKGDLQ 51
           P+A+RFSQAIGVCV+KTF V  LKWAD+ REYIEVVKG+LQ
Sbjct: 83  PYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQ 123

The following BLAST results are available for this feature:

BLAST of MELO3C035539.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	1.3e-40	52.71	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901035.1	9.8e-09	78.05	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_011648549.1	4.3e-04	63.16	PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus]	[more]

BLAST of MELO3C035539.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035539.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035539.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	8.4e-41	52.71	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	6.5e-09	78.05	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035539.2.1	MELO3C035539.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 173..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..151

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035539.2	Wax gourd	medwgoB176
MELO3C035539.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035539.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035539.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035539.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035539.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035539.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035539.2	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C035539.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035539.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035539.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035539.2	Watermelon (Charleston Gray)	medwcgB127
MELO3C035539.2	Watermelon (97103) v1	medwmB165
MELO3C035539.2	Silver-seed gourd	carmedB0174
MELO3C035539.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035539.2	Watermelon (97103) v2	medwmbB127