MELO3C035533.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035533.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr12 : 8152239 .. 8153024 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGCTTATTGAATGTTTTTTTCTATGTTCACAGGCATCGTGTCATACAGACGTAATAATTTTCTAGAGAGGGACGCTATGTTCCTCAAATTTGAAGACGATTTAGATAATCTTGCGGGAGGGTCATCGTTCGTGAACGACAATGCGGGTGAGTCTAAGAATTTCTTTCATTTTAACTTAGGATTATTTCATTTTTTTTCTCTAACATTATATTTTATTATAATTTATTGAGCACAGTCGTCTTCTCAACCACATGCGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAAAGTTGGAGCGCCACGTTGCTGTCAATGGGTGCATTTCAATGACGATCGTCCCGGAGTGAAGAAGCCTATTTTCGCACACGTCGTTCGCTTCAGCTAGGCAATAGGCCTATGTGTGCAAAAGACATTTTCCGTCCACTGCCTTAAGTGGGCAAACGTTGGCAGAGAATATATTGAGGTTGTCAAGGGCGACCTCCAGGTAATTAAGTCCACTACATGTTTATGATTGCAATGGAAGCTTACAAACGGCTTGGTTGTGAGGCTGCGCGAAAGGACAAATGGCTTGGATCTTCAGTGGTAGTAGACGATCAGAAGAAGGGAGACGACCGTAACAGGCGACGAGCGACGACGATTGAATCTGCATTGGGCGACTAAAGTTTTGCGTGTGAGGAAGGAGATGGATGAATAGTAACTTGCATGCATCCTGGTTCTTAAAATAAATATTATTATTATTATTATTACTACGATCAATTTATTTTCCTTTTCTTTTC

mRNA sequence

TTTGCTTATTGAATGTTTTTTTCTATGTTCACAGGCATCGTGTCATACAGACGTAATAATTTTCTAGAGAGGGACGCTATGTTCCTCAAATTTGAAGACGATTTAGATAATCTTGCGGGAGGGTCATCGTTCGTGAACGACAATGCGGCACAGTCGTCTTCTCAACCACATGCGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAAAGTTGGAGCGCCACGTTGCTGTCAATGGGTGCATTTCAATGACGATCGTCCCGGAGTGAAGAAGCCTATTTTCGCACACGTCGTTCGCTTCAGCTAGGCAATAGGCCTATGTGTGCAAAAGACATTTTCCGTCCACTGCCTTAAGTGGGCAAACGTTGGCAGAGAATATATTGAGGTTGTCAAGGGCGACCTCCAGGTAATTAAGTCCACTACATGTTTATGATTGCAATGGAAGCTTACAAACGGCTTGGTTGTGAGGCTGCGCGAAAGGACAAATGGCTTGGATCTTCAGTGGTAGTAGACGATCAGAAGAAGGGAGACGACCGTAACAGGCGACGAGCGACGACGATTGAATCTGCATTGGGCGACTAAAGTTTTGCGTGTGAGGAAGGAGATGGATGAATAGTAACTTGCATGCATCCTGGTTCTTAAAATAAATATTATTATTATTATTATTACTACGATCAATTTATTTTCCTTTTCTTTTC

Coding sequence (CDS)

ATGTTTTTTTCTATGTTCACAGGCATCGTGTCATACAGACGTAATAATTTTCTAGAGAGGGACGCTATGTTCCTCAAATTTGAAGACGATTTAGATAATCTTGCGGGAGGGTCATCGTTCGTGAACGACAATGCGGCACAGTCGTCTTCTCAACCACATGCGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAAAGTTGGAGCGCCACGTTGCTGTCAATGGGTGCATTTCAATGACGATCGTCCCGGAGTGA

Protein sequence

MFFSMFTGIVSYRRNNFLERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRAQSRLLKLERHVAVNGCISMTIVPE
Homology
[Close]
BLAST of MELO3C035533.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 0 

Query: 12 YRRNNFLERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRAQSRLLKLER 71
          Y RNNFLE D MFL+FEDDLDNLAGGSS V DNA  SSSQP AT TPRRR QSRLL+LE 
Sbjct: 3  YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAG-SSSQPPATQTPRRRVQSRLLELEC 62

Query: 72 HVAVNGCISMTIVP 86
          HV V GCI M I P
Sbjct: 63 HVVVYGCIPMMIAP 75

[Close]
BLAST of MELO3C035533.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 18 LERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRAQSRLLKLERHVAVNG 77
          +E D MFL+FEDDLDN+AGGSS V DN   SS Q  ATPTPRRRAQSRLL+LERHVA+NG
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ--ATPTPRRRAQSRLLELERHVAING 60

Query: 78 CISMTIVP 86
          CI MTI P
Sbjct: 61 CIPMTIAP 66

[Close]
BLAST of MELO3C035533.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 3   FSMFTGIVSYRRNNFLERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRA 62
           FS+ + I S+ RNNFLE D MFLKF  DLDNLAGGSS +++N ++SSSQP AT TP+R  
Sbjct: 45  FSVISTISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDEN-SESSSQPSATLTPKRHT 104

Query: 63  QSRLLKLERHV 74
           QSRLL+LE +V
Sbjct: 105 QSRLLELECYV 114

[Close]
BLAST of MELO3C035533.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 40/61 (65.57%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 11 SYRRNNFLERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRAQSRLLKLE 70
          SY R+NFLE D MFL+FED LDN  GGSS V DN   SS QP  T TPRR  QSRLL L 
Sbjct: 4  SYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQP-GTLTPRRHVQSRLLGLL 63

Query: 71 R 72
          R
Sbjct: 64 R 63

[Close]
BLAST of MELO3C035533.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 0 

Query: 12 YRRNNFLERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRAQSRLLKLER 71
          Y RNNFLE D MFL+FEDDLDNLAGGSS V DNA  SSSQP AT TPRRR QSRLL+LE 
Sbjct: 3  YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAG-SSSQPPATQTPRRRVQSRLLELEC 62

Query: 72 HVAVNGCISMTIVP 86
          HV V GCI M I P
Sbjct: 63 HVVVYGCIPMMIAP 75

[Close]
BLAST of MELO3C035533.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-18
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 18 LERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRAQSRLLKLERHVAVNG 77
          +E D MFL+FEDDLDN+AGGSS V DN   SS Q  ATPTPRRRAQSRLL+LERHVA+NG
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ--ATPTPRRRAQSRLLELERHVAING 60

Query: 78 CISMTIVP 86
          CI MTI P
Sbjct: 61 CIPMTIAP 66

[Close]
BLAST of MELO3C035533.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 3   FSMFTGIVSYRRNNFLERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRA 62
           FS+ + I S+ RNNFLE D MFLKF  DLDNLAGGSS +++N ++SSSQP AT TP+R  
Sbjct: 45  FSVISTISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDEN-SESSSQPSATLTPKRHT 104

Query: 63  QSRLLKLERHV 74
           QSRLL+LE +V
Sbjct: 105 QSRLLELECYV 114

[Close]
BLAST of MELO3C035533.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-10
Identity = 40/61 (65.57%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 11 SYRRNNFLERDAMFLKFEDDLDNLAGGSSFVNDNAAQSSSQPHATPTPRRRAQSRLLKLE 70
          SY R+NFLE D MFL+FED LDN  GGSS V DN   SS QP  T TPRR  QSRLL L 
Sbjct: 4  SYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQP-GTLTPRRHVQSRLLGLL 63

Query: 71 R 72
          R
Sbjct: 64 R 63

The following BLAST results are available for this feature:
BLAST of MELO3C035533.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901035.12.0e-1975.68PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
ADN34071.14.9e-1875.00CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901155.16.2e-1363.38PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_016902990.11.1e-0965.57PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo][more]
BLAST of MELO3C035533.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035533.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035533.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME1.3e-1975.68uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|E5GC72|E5GC72_CUCME3.3e-1875.00CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME4.1e-1363.38LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|A0A1S4E4T7|A0A1S4E4T7_CUCME7.3e-1065.57uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035533.2.1MELO3C035533.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..62

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035533.2Silver-seed gourdcarmedB0174
MELO3C035533.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035533.2Watermelon (97103) v2medwmbB127
MELO3C035533.2Wax gourdmedwgoB176
MELO3C035533.2Cucumber (Gy14) v2cgybmedB009
MELO3C035533.2Cucumber (Gy14) v1cgymedB361
MELO3C035533.2Cucurbita maxima (Rimu)cmamedB161
MELO3C035533.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035533.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035533.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035533.2Cucurbita pepo (Zucchini)cpemedB880
MELO3C035533.2Wild cucumber (PI 183967)cpimedB011
MELO3C035533.2Cucumber (Chinese Long) v2cumedB010
MELO3C035533.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035533.2Watermelon (Charleston Gray)medwcgB127
MELO3C035533.2Watermelon (97103) v1medwmB165