MELO3C035518.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035518.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCell division protein ftsH
Locationchr12 : 7555058 .. 7556550 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAACTAATATGTTAATAGCGTGAAAGGAGGAGAAAATTTGAAACTAATATGGAAAGAGCATAACAGGAGAACGATCCATGTTCTCTTTTGTACATTGATATTAGAGTTTTCAAGCGTTCGTTCTTCTGCATACATTCTAGGTTCAGCCAAGTCGGTTCCATCACTGTGTGCAGAAGCATTCTTCCTTTCCGGTGAGTGTTTTTATTATGTTCTTATCTGAAATTAAAAAGGGTATATAAGGAACTCCTTTTCTTGTGTAGAGATACACCGTCAATAGCTAATTACGATTTTCAATTCATCATTACACAGACATTTTTCGTTAGGACAAGTCCGTTCCATCATTCTATCCAGAAAGTCGGTTCCCTTCCGATGAGTGAATTTTTTTTTTTTTTAAGTAATCTGAAATTAATGGGGGTATATCTAAAAGTCTTCCATCACTCTGTTTAAAATGTCGAAGAAATTTAGGTTTTGGTGTTTAAAATATCGAAGAAATCACCTTAAAGTGTATAGAGTCTGTGTAAAACAAATCTCAAAAGTAATGCATGTTGTATATATTGAATGATTAAATCTAGTTTGAAGTCTGTATATATTGAAGTGTTGATTTAGTAATTAAACAAGCAATTTTAAGTGCAGAATCTCTGTGAAAACATTAATTTTAGTAATGCATGTTGTAGAATTTTAAGTACAGATTCTCTGTGAAAACAACAAAATGGTTTGAAGAATTGAAAGATGCCTAGGATCGAGGATGAAAAATATAAAATCAAACAAGGATGAACCTACTGTCATCGACGATAATACAGAGGTATATTCCTTATTTACTGAACATAAATTTTAAATTATACAAATAGTTAAACACAAATATAATATGTGTATATATCGTAGGAGGAAGTACGAAATAAAGAACCAATTGAATACCAACCACTACAAACAATATATCCAGAGGATGATGAAGAAGAATTCAGAGGACCGACAGGTACAAAGATTGTTGTGTATCAGGATCAGAAGTTGAAGAAAACGAATGTGGTGTTTGAAACTCCAGAAGCAAAAATGCCAAAAAACAACAAAGGAAACAATCTAAAACAGTAAGTATATGATATATTTACTGATATATATACTTTATATGATCTCTACTGATGATTTAATTATATTTGTTTCTAGATTAATGAAGGAGAAACTTCGTATGATGTACCACTAAACTTCTCGTCGGAGTCTGATGAGGTTTATTTATGATCAATACAAATTGAAAAATGTTCTTTGTACAAATGATATCTCCTTTTATATACATATAGAAACTAATATTAATGATATTCTATTATATGCAGGACAATGTATCAATAGCCAAAAGGAGATTGTTCAAACGTGTGCTGAACGGAAAAGGGAAGGAAACATCAACTGTAAATGTATGTATATATGAAATATAGGTATGTAAATAACTATCGTTACATTACTATAAGGTTTTGATTATTTATATGAAAGGTAGGAATCTAA

mRNA sequence

ATGGAGTTTTCAAGCGTTCGTTCTTCTGCATACATTCTAGGTTCAGCCAAGTCGGTTCCATCACTGTGTGCAGAAGCATTCTTCCTTTCCGGATCGAGGATGAAAAATATAAAATCAAACAAGGATGAACCTACTGTCATCGACGATAATACAGAGGAGGAAGTACGAAATAAAGAACCAATTGAATACCAACCACTACAAACAATATATCCAGAGGATGATGAAGAAGAATTCAGAGGACCGACAGGTACAAAGATTGTTGTGTATCAGGATCAGAAGTTGAAGAAAACGAATGTGATTAATGAAGGAGAAACTTCGTATGATGTACCACTAAACTTCTCGTCGGAGTCTGATGAGGACAATGTATCAATAGCCAAAAGGAGATTGTTCAAACGTGTGCTGAACGGAAAAGGGAAGGAAACATCAACTGTAAATGTAGGAATCTAA

Coding sequence (CDS)

ATGGAGTTTTCAAGCGTTCGTTCTTCTGCATACATTCTAGGTTCAGCCAAGTCGGTTCCATCACTGTGTGCAGAAGCATTCTTCCTTTCCGGATCGAGGATGAAAAATATAAAATCAAACAAGGATGAACCTACTGTCATCGACGATAATACAGAGGAGGAAGTACGAAATAAAGAACCAATTGAATACCAACCACTACAAACAATATATCCAGAGGATGATGAAGAAGAATTCAGAGGACCGACAGGTACAAAGATTGTTGTGTATCAGGATCAGAAGTTGAAGAAAACGAATGTGATTAATGAAGGAGAAACTTCGTATGATGTACCACTAAACTTCTCGTCGGAGTCTGATGAGGACAATGTATCAATAGCCAAAAGGAGATTGTTCAAACGTGTGCTGAACGGAAAAGGGAAGGAAACATCAACTGTAAATGTAGGAATCTAA

Protein sequence

MEFSSVRSSAYILGSAKSVPSLCAEAFFLSGSRMKNIKSNKDEPTVIDDNTEEEVRNKEPIEYQPLQTIYPEDDEEEFRGPTGTKIVVYQDQKLKKTNVINEGETSYDVPLNFSSESDEDNVSIAKRRLFKRVLNGKGKETSTVNVGI
Homology
[Close]
BLAST of MELO3C035518.2 vs. NCBI nr
Match: XP_016899145.1 (PREDICTED: uncharacterized protein LOC103485249 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 7.7e-11
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 83  GTKIVVYQDQKL--KKTNVINEGETSYDVPLNFSSESDEDNVSIAKRRLFKRVLNGKGKE 142
           GT     ++Q+L  ++   INE ETSYDVPLNFSSESDEDNV I KRRLF+RVL  KGKE
Sbjct: 2   GTTPAGVREQRLTTERRREINERETSYDVPLNFSSESDEDNVPITKRRLFERVLKEKGKE 61

Query: 143 TSTVNVG 148
           + T N G
Sbjct: 62  SQTKNEG 68

[Close]
BLAST of MELO3C035518.2 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 32  SRMKNIKSNKDEPTVIDDNTEEEVRNKEPIEYQPLQTIYPEDDEEEFRGPTGT 85
           +++K IKS+KD   +I+DN EE++RN+EP++YQP+QTIYP+DDEEE +G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

[Close]
BLAST of MELO3C035518.2 vs. NCBI nr
Match: KGN44059.1 (Cell division protein ftsH [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 61  IEYQPLQTIYPEDDEEEFRGPTGTKIVVYQDQKLKKTNVINEGETSYDVPLNFSSESDED 120
           ++++P+QT+YP +DE + RGPTGT+IVVY+++K                      E D D
Sbjct: 1   MDFEPIQTVYPGEDEYDLRGPTGTQIVVYKERK---------------------DEPDVD 60

Query: 121 NVSIAKRRLFK-RVLNGKGKETSTVN 146
           N+ IAKRRLFK +    K KE+  VN
Sbjct: 61  NIPIAKRRLFKDKSSKEKKKESEMVN 65

[Close]
BLAST of MELO3C035518.2 vs. TrEMBL
Match: tr|A0A1S4DTW7|A0A1S4DTW7_CUCME (uncharacterized protein LOC103485249 OS=Cucumis melo OX=3656 GN=LOC103485249 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-11
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 83  GTKIVVYQDQKL--KKTNVINEGETSYDVPLNFSSESDEDNVSIAKRRLFKRVLNGKGKE 142
           GT     ++Q+L  ++   INE ETSYDVPLNFSSESDEDNV I KRRLF+RVL  KGKE
Sbjct: 2   GTTPAGVREQRLTTERRREINERETSYDVPLNFSSESDEDNVPITKRRLFERVLKEKGKE 61

Query: 143 TSTVNVG 148
           + T N G
Sbjct: 62  SQTKNEG 68

[Close]
BLAST of MELO3C035518.2 vs. TrEMBL
Match: tr|A0A1S3CM64|A0A1S3CM64_CUCME (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 32  SRMKNIKSNKDEPTVIDDNTEEEVRNKEPIEYQPLQTIYPEDDEEEFRGPTGT 85
           +++K IKS+KD   +I+DN EE++RN+EP++YQP+QTIYP+DDEEE +G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

[Close]
BLAST of MELO3C035518.2 vs. TrEMBL
Match: tr|A0A0A0K560|A0A0A0K560_CUCSA (Cell division protein ftsH OS=Cucumis sativus OX=3659 GN=Csa_7G154990 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 61  IEYQPLQTIYPEDDEEEFRGPTGTKIVVYQDQKLKKTNVINEGETSYDVPLNFSSESDED 120
           ++++P+QT+YP +DE + RGPTGT+IVVY+++K                      E D D
Sbjct: 1   MDFEPIQTVYPGEDEYDLRGPTGTQIVVYKERK---------------------DEPDVD 60

Query: 121 NVSIAKRRLFK-RVLNGKGKETSTVN 146
           N+ IAKRRLFK +    K KE+  VN
Sbjct: 61  NIPIAKRRLFKDKSSKEKKKESEMVN 65

The following BLAST results are available for this feature:
BLAST of MELO3C035518.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899145.17.7e-1162.69PREDICTED: uncharacterized protein LOC103485249 [Cucumis melo][more]
XP_008464749.11.9e-0958.49PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo][more]
KGN44059.12.6e-0640.70Cell division protein ftsH [Cucumis sativus][more]
BLAST of MELO3C035518.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035518.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035518.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DTW7|A0A1S4DTW7_CUCME5.1e-1162.69uncharacterized protein LOC103485249 OS=Cucumis melo OX=3656 GN=LOC103485249 PE=... [more]
tr|A0A1S3CM64|A0A1S3CM64_CUCME1.3e-0958.49uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0K560|A0A0A0K560_CUCSA1.7e-0640.70Cell division protein ftsH OS=Cucumis sativus OX=3659 GN=Csa_7G154990 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035518.2.1MELO3C035518.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..60

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035518.2Wax gourdmedwgoB176
MELO3C035518.2Cucumber (Gy14) v2cgybmedB009
MELO3C035518.2Cucumber (Gy14) v1cgymedB370
MELO3C035518.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035518.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035518.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035518.2Wild cucumber (PI 183967)cpimedB011
MELO3C035518.2Cucumber (Chinese Long) v2cumedB010
MELO3C035518.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035518.2Watermelon (Charleston Gray)medwcgB127
MELO3C035518.2Watermelon (97103) v1medwmB165
MELO3C035518.2Silver-seed gourdcarmedB0174
MELO3C035518.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035518.2Watermelon (97103) v2medwmbB127