MELO3C035508.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035508.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	polyprenol reductase 2
Location	chr12 : 20649283 .. 20652279 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTTCAAACGAACGATCGGTTCATTCCTCCAAAATACTGCGAAAATCAAGTTTATTGGACCTATTCTTTTAGCAAAATGGAGCTGAGAATTGTTTGGCTTCTCAGAGCTGCTTAGGTTGCAGGAATTTTGCCTATAATTGTAGTCTTCTTACCCTTCTCTAGACTTAATTGGTTTCGTGGAATTCTGTTGGGGTTTGCGAAGAGAGGGAAGATCTTGCAATCGTCTTCTCAAATAAGTGGTTGAATTCTCAAATTTCGATTTCCTTGATTATATTTATCCCCTGAGCCTTTATGGTTTGAATATCTGTTTGGTGGTTGAGAAAATTGAATGGCAGTGAAGAGTATTGTAAAGCTTTTGAATTAGGATTTGTATTATGGGTATCGAATGAGGTGATTCTATGTATTTTGCTTTTTTTCTTCAATAATCACTTTTAGTTTTAATCTGTGGAAGAGAATTGAAAATTTTAACATATGTGGGATTTTTTCTCCTTCATATATATGAGTAAATGCAACGAGGTATAGAAAAAACATGTAGGTAGGCACGAAATCTATTAAAGGGTATAAACGTATGCGGGTAAAATTGAAAATTTGGTCCATACCGTTTGAAGAAAGATAGAAATTAGAATTTAATCCCTCATTTATAGTTATAATTTAGTTTTTATGGTTTGATAAAGTTCTCATAAATAGTCAGTATCGAACTATAGGGGGCTTTTTTGTGAAGTTTTATTGTATTGACATTCAAAACCATATTTAGATTAAATTCTAAATTTCTTAGAAGTCAAAATCATTAAGGACCAAATTTGTAATTTAACCAAATATCTATTGTTCTTTTCCTCCGGTGACCCTACCAAAAAACACTATGGGAGCAATTCCAATCTGTATAATGACTAGACCCTACATTTAATACTTAGTCTTAGTCTCACTTTACAAAGTTTTCATTATCTCATTTAACATTGGATTTTGATTCAATCTAGTGTTGGTACTGATATTGAAGTGGGACAAGATAGTAGGTCAACTAGATAGGATGTGGGAGGAGGGTATACCAAATATTTGATAAGGTTTTAAACCACTATATCGTGTTAGATGTTTGTTTGTTTGTATCTGACATAGATTCTATGCTCCTATTTACCTATATTTTTTAATTTCAGAAATTCACTGTACCTCAAAAATTCTTCTGTCACTTTTATGTGTTGGTTGTTATCTGAACAACCTTGTTGCTAGGAAGAACTTGGACTTATGTATATGTATCAACTCCGGAAATCTCAGAACCATTTTTCCTGCCATTACCAACCAGCTGACTGGAGGTTCAAGATTGTTTCCATGGCAAAAATCTCATTCATCTTGGAAGGAACATGGATTCTTGGTCTGGAAAGCGGTTTTTCTGATTTTATTAATGGAAGTTCAAGTTTTGAGACGTCTTTATGAAACAATATACGTTTTCAACTATAGTCCCTCGGCTCGGATGCACATCTTTGGATATTTAACTGGCTTGTTGTAAGTACCACTTTGAAGCTTTCTTTAGTTGGTTTGTTGCAATATATATTCACTGGTTTTAATATAGCTAGTTTCTTTGTACTTTCGGCCTTGTTTTAATACGTTGTTGAAAGACTTAAGTGCTAGAATCAAGACTATTTGCTTCTCAAGATGAAAAATAGTTTCTGGGTCAATTTGAATTTGCATTTTTTAGATTAATGTATATTATTTCGTTTTTCATATGTAAGGATGTAGTACGATTCATTCTTTTAGGCTTTATTTTTTTCGTGGATGTTTGTGTTAGATACCTAGATTAGTATAAGTTAGGGGTATAACGGTAAATGGTTATGTTGGCAGTTAGATGGTTATAAATAGGATGTTGGGAAGAGAAGAGAGGGGTATGAAGATTTTGGTGAAGAAAAAGGCTCTCTTACTCCTTGAGAGATAGGAGAAGTGTTTTTTTTCTTCTTTTCTGTGTTTTGAATTAGAAGTATTCCATTGTTAGGGAAGGACTGTTATTGTAGTTCATTGTTGGGAACTACTTTTGCTTTCATATATTGTAATTTTCCTTTGAGATATCAATAAAGAATAGACACTACATTAGTGTTCTATCAGATTGCTATTTTGGTGGTTCATTGTTCTTTGTTGTAGTTCAATCCTGACGTCTAGAGGCTTGTTATGTTGGATCTCTATTATTTTTTATTAGTTTCTATACAGCAGCTCCTCTATAACTTTGTAGCAATTGTATTCCAAAAGTGTATCACTTTGCCGCAAATGGGCTAGCTCAGTTTATTGTTCAAGGAAGAAGGCATATGCCTGATGTTGAAATTAGCCCGTTGGATGCCGTGATTCCTCTATCATATTTAGGGTGGCATCAGTGGATTGGTGCAGCTTTATTCTTTTGGGTTGGATTCATTAGCATCATTGTCATCAGATTCTGGTACAGTAAATATCTTCAATTAGAAATTTTTTTATTTTAGATCTTAACTTTAGAACTTGATAGTTCACTATCTTCTCTTATCCTTCATAATCAACAAATTCGTCAACAATACAAAAGTGTTTTGGACTTGGAATAACAGAACTTTTAATGCTCGAATGTGTTCAAAACAAATTTCAAATCGAATCCTAGATTCACATGACTGATACGTAAGTTTAATTTATTTAGGGCTCATTGCGGGTACGTAGAGAACAATCTGAAGAATATAGAATTCCTCATGGTGATTGGTTCTAAGTCGTGTCTTCTCCACGCTATCTTGCCAAGGTGTATCCCATGAATTAGAGATCTTTTTTTCCATTTATACAAAATTAAATAAGTTTGGATTATGGACCTAATTTTTTAAACTTATTTTGTCGGATATGCAAGAAACCATTTTTAAAAATTAAACATATTTCCTCTCATATCTTACACATGAATCATTTCAAGTATTGCCAAATTTTAAAAAAAAAAAAAAAGTTAAAAGCCTTTTCTTTTCAATTTTTTACCTTGATTTTTAAAACATTTCTAAAATGTAGTCAAAAAAA

mRNA sequence

TTCATTTCAAACGAACGATCGGTTCATTCCTCCAAAATACTGCGAAAATCAAGTTTATTGGACCTATTCTTTTAGCAAAATGGAGCTGAGAATTGTTTGGCTTCTCAGAGCTGCTTAGGTTGCAGGAATTTTGCCTATAATTGTAGTCTTCTTACCCTTCTCTAGACTTAATTGGTTTCGTGGAATTCTGTTGGGGTTTGCGAAGAGAGGGAAGATCTTGCAATCGTCTTCTCAAAAATTCACTGTACCTCAAAAATTCTTCTGTCACTTTTATGTGTTGGTTGTTATCTGAACAACCTTGTTGCTAGGAAGAACTTGGACTTATGTATATGTATCAACTCCGGAAATCTCAGAACCATTTTTCCTGCCATTACCAACCAGCTGACTGGAGGTTCAAGATTGTTTCCATGGCAAAAATCTCATTCATCTTGGAAGGAACATGGATTCTTGGTCTGGAAAGCGGTTTTTCTGATTTTATTAATGGAAGTTCAAGTTTTGAGACGTCTTTATGAAACAATATACGTTTTCAACTATAGTCCCTCGGCTCGGATGCACATCTTTGGATATTTAACTGGCTTGTTTTTCTATACAGCAGCTCCTCTATAACTTTGTAGCAATTGTATTCCAAAAGTGTATCACTTTGCCGCAAATGGGCTAGCTCAGTTTATTGTTCAAGGAAGAAGGCATATGCCTGATGTTGAAATTAGCCCGTTGGATGCCGTGATTCCTCTATCATATTTAGGGTGGCATCAGTGGATTGGTGCAGCTTTATTCTTTTGGGTTGGATTCATTAGCATCATTGTCATCAGATTCTGGGCTCATTGCGGGTACGTAGAGAACAATCTGAAGAATATAGAATTCCTCATGGTGATTGGTTCTAAGTCGTGTCTTCTCCACGCTATCTTGCCAAGGTGTATCCCATGAATTAGAGATCTTTTTTTCCATTTATACAAAATTAAATAAGTTTGGATTATGGACCTAATTTTTTAAACTTATTTTGTCGGATATGCAAGAAACCATTTTTAAAAATTAAACATATTTCCTCTCATATCTTACACATGAATCATTTCAAGTATTGCCAAATTTTAAAAAAAAAAAAAAAGTTAAAAGCCTTTTCTTTTCAATTTTTTACCTTGATTTTTAAAACATTTCTAAAATGTAGTCAAAAAAA

Coding sequence (CDS)

ATGCCTGATGTTGAAATTAGCCCGTTGGATGCCGTGATTCCTCTATCATATTTAGGGTGGCATCAGTGGATTGGTGCAGCTTTATTCTTTTGGGTTGGATTCATTAGCATCATTGTCATCAGATTCTGGGCTCATTGCGGGTACGTAGAGAACAATCTGAAGAATATAGAATTCCTCATGGTGATTGGTTCTAAGTCGTGTCTTCTCCACGCTATCTTGCCAAGGTGTATCCCATGA

Protein sequence

MPDVEISPLDAVIPLSYLGWHQWIGAALFFWVGFISIIVIRFWAHCGYVENNLKNIEFLMVIGSKSCLLHAILPRCIP

Homology

[Close]

BLAST of MELO3C035508.2 vs. NCBI nr
Match: XP_004148545.1 (PREDICTED: polyprenol reductase 2-like [Cucumis sativus] >KGN43186.1 hypothetical protein Csa_7G007840 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 8.5e-09
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MPDVEISPLDAVIPLSYLGWHQWIGAALFFW 32
           MPDVEISPLDAVIPLSYLGW QWIGAALFFW
Sbjct: 205 MPDVEISPLDAVIPLSYLGWRQWIGAALFFW 235

[Close]

BLAST of MELO3C035508.2 vs. NCBI nr
Match: XP_008444886.1 (PREDICTED: polyprenol reductase 2 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-07
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MPDVEISPLDAVIPLSYLGWHQWIGAALFFW 32
           MPDVEISPLDAVIPLS LGW QWIGA LFFW
Sbjct: 205 MPDVEISPLDAVIPLSNLGWCQWIGATLFFW 235

[Close]

BLAST of MELO3C035508.2 vs. NCBI nr
Match: XP_022933967.1 (polyprenol reductase 2-like [Cucurbita moschata] >XP_022933968.1 polyprenol reductase 2-like [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-05
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   MPDVEISPLDAVIPLSYLGWHQWIGAALFFW 32
           M DVE+S LDAVIPL+ LGW QWIGAALFFW
Sbjct: 205 MLDVEVSLLDAVIPLANLGWRQWIGAALFFW 235

[Close]

BLAST of MELO3C035508.2 vs. NCBI nr
Match: XP_022971054.1 (polyprenol reductase 2-like [Cucurbita maxima] >XP_022971063.1 polyprenol reductase 2-like [Cucurbita maxima])

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-05
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   MPDVEISPLDAVIPLSYLGWHQWIGAALFFW 32
           M DVE+S LDAVIPL+ LGW QWIGAALFFW
Sbjct: 205 MLDVEVSLLDAVIPLANLGWRQWIGAALFFW 235

[Close]

BLAST of MELO3C035508.2 vs. NCBI nr
Match: XP_023530646.1 (polyprenol reductase 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.1 bits (126), Expect = 4.8e-04
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 4   VEISPLDAVIPLSYLGWHQWIGAALFFW 32
           VE+S LDAVIPL+ LGW QWIGAALFFW
Sbjct: 208 VEVSLLDAVIPLANLGWRQWIGAALFFW 235

[Close]

BLAST of MELO3C035508.2 vs. TrEMBL
Match: tr|A0A0A0K5R7|A0A0A0K5R7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007840 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-09
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MPDVEISPLDAVIPLSYLGWHQWIGAALFFW 32
           MPDVEISPLDAVIPLSYLGW QWIGAALFFW
Sbjct: 205 MPDVEISPLDAVIPLSYLGWRQWIGAALFFW 235

[Close]

BLAST of MELO3C035508.2 vs. TrEMBL
Match: tr|A0A1S3BBF0|A0A1S3BBF0_CUCME (polyprenol reductase 2 OS=Cucumis melo OX=3656 GN=LOC103488097 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-07
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MPDVEISPLDAVIPLSYLGWHQWIGAALFFW 32
           MPDVEISPLDAVIPLS LGW QWIGA LFFW
Sbjct: 205 MPDVEISPLDAVIPLSNLGWCQWIGATLFFW 235

The following BLAST results are available for this feature:

BLAST of MELO3C035508.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148545.1	8.5e-09	96.77	PREDICTED: polyprenol reductase 2-like [Cucumis sativus] >KGN43186.1 hypothetica...	[more]
XP_008444886.1	6.1e-07	90.32	PREDICTED: polyprenol reductase 2 [Cucumis melo]	[more]
XP_022933967.1	5.7e-05	80.65	polyprenol reductase 2-like [Cucurbita moschata] >XP_022933968.1 polyprenol redu...	[more]
XP_022971054.1	5.7e-05	80.65	polyprenol reductase 2-like [Cucurbita maxima] >XP_022971063.1 polyprenol reduct...	[more]
XP_023530646.1	4.8e-04	82.14	polyprenol reductase 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C035508.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035508.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035508.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5R7\|A0A0A0K5R7_CUCSA	5.6e-09	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007840 PE=4 SV=1	[more]
tr\|A0A1S3BBF0\|A0A1S3BBF0_CUCME	4.0e-07	90.32	polyprenol reductase 2 OS=Cucumis melo OX=3656 GN=LOC103488097 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035508.2.1	MELO3C035508.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035508.2	Silver-seed gourd	carmedB0217
MELO3C035508.2	Silver-seed gourd	carmedB0432
MELO3C035508.2	Cucumber (Chinese Long) v3	cucmedB026
MELO3C035508.2	Watermelon (97103) v2	medwmbB143
MELO3C035508.2	Wax gourd	medwgoB187
MELO3C035508.2	Cucumber (Gy14) v2	cgybmedB023
MELO3C035508.2	Cucumber (Gy14) v1	cgymedB291
MELO3C035508.2	Cucurbita maxima (Rimu)	cmamedB213
MELO3C035508.2	Cucurbita maxima (Rimu)	cmamedB423
MELO3C035508.2	Cucurbita moschata (Rifu)	cmomedB201
MELO3C035508.2	Cucurbita moschata (Rifu)	cmomedB408
MELO3C035508.2	Cucurbita pepo (Zucchini)	cpemedB031
MELO3C035508.2	Cucurbita pepo (Zucchini)	cpemedB559
MELO3C035508.2	Wild cucumber (PI 183967)	cpimedB026
MELO3C035508.2	Cucumber (Chinese Long) v2	cumedB025
MELO3C035508.2	Bottle gourd (USVL1VR-Ls)	lsimedB189
MELO3C035508.2	Watermelon (Charleston Gray)	medwcgB142
MELO3C035508.2	Watermelon (97103) v1	medwmB144