MELO3C035488.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035488.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Retropepsin-like protein
Location	chr12 : 6394714 .. 6398730 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTTCACCCCGATACGAGTCCAAGCCACCGAAATCACTTAAATCAGAGTTATAACGAAGAAGAACGGTCAAAAACAAGTTCAAGGGCAAAACCAGGAAATTGGAAAAGATCGGACGAACCAGATCGCACTACGTGGCATCACCAGATCATGCCACACGTCCACCTCAAAGTCACGTGTTCGAACCCCAGGCGCGATCCTATTTTTCCTTTCATTTTTTCGCACGACCCAGAAACTCGATCCACGAACCGGTTCGCGACCCCCGTCTAGTCCGCCACATGTCGAGCCCTCGTCCGCGCGCGCCTCTCCCCTATCGTGAGTTCGAATCTCAGCAGCCGCGTTTCCTTTTTTTTTTCAATTGGGCCAACCCAAGACCCGACCCAAGCCCATTCGTCATCCAGTTCATCATTTTCCCCAAAATTAACTGCAAAATGGTAGTTTTTAACCTAGTTCCATTTTTTTCTCCCATTTTCTCTTCTATAAAATCCCTCATTTTTTTTGGGACATAAGAAATTCCAATGTAAAAAAAAAATCATCTTTCTCATTCAATTCTTGTAGCAAAATTTTTGAAACTTTATCAATAAAAGATTACTTTTGTCAAAGAAATAGATTCTTTCCTCCACAACTCTTCAAGAATTTCATCAATCTTCATGGGCTAAGGTAATCTTTTGAGACTTTTTCTCGGGTTAAATTACCATGTTTTCTTTAAGAATTAAATTCTTTTCTATATCTTTTCAATTTTTTATTTGATTGCTTGTTTCCTTTTGGAATTTCTTTTGAAATTTCAATAAAATAAATAAGTTTTTCCCATCAATTTTTCATTGAAATTTCTTTACAAACTCTTAAAGTGCTGAACTTAAATTTTGATTTGCAATGGTTTGTTATGATGAATTAATTGTTGAGATTGTCCTTAATTTTCTACTAATTGATTCTTGCATAACAAGTTTGAAGTGGGCATTAATTTTGCTAAGGGTAGTGGCTATCCCCTCCTTATCAAATCTTGAATAGGATGAATTTTGCCTCAATTTGAACATGCTTGGGTTGCTGAGATTGATCATGTTTTAATAGAGATTTGGTTACTTTTTTTTTTTGTAAAAATTCCATTCTTGCATATTCAAGAAAAGATTAATTGATCTTTTTTTTTTGAATGATAAGAAACATGGTAATTGCCCAAGAAAAAGTCTCTCTACTAAACTTGAAAGAAAAACTTTACTTGAATTACTTGTTGTCACTAATCATCCCTTAATGCTTGTTCTTTATTATAGTTCAAGAATTACTTCCACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTTTTTAATTTTCTTTTAGATCCTTAAGCTACTAATCGACCTTGTTTACAAATTTTGAAATTTTGAATCTTAAATGCTCTCTAGTGTTCGACACCCTTCTTCCCCATACTACTCTCAATTTCCACAAAGGTAAGAAGGGTTAAAAAGATAACTTTGAAAGGTAATTGAGGTAATCCCTAACCCTCATATTTCATCTAGTATTTCTCTATTCTTGTATTCTTTTATTTTAGACTAGGAATAAATTCTTGTTCTGTATATTTACATCCATAACAACCCATCATTTTGATAACAACTTACCTCAAGAAAAAAATCCCATCTTTCAAAAATGGTGCCGTTGCCGGAGAGCACGGTGTAGTTTTCAAGACTTTTTGATTTCAAACTGTCTTTTAGAGCTTCTTGATTCTTATATTCATTTTGTAAAAAAAAAAAGAAAAAAATATAGGCATAAAGAGATCGTGTAGAATTTTTTGTGTTCTCTCTTCTCTTTTCTTGCATGACTCGTTCTTCAAATTTAGAATTTCCTTACTTTGAAGATTTAAATAAGGAGGTTCGTAGAATTAGAAGAGAAAGGAGAGAAGAGAATAGCATCCTCAATCTTTCTAACCAAGAACCTTTAAGAGATTAAGAACCTAGCCTAGATTCTCCTTTAGATCCAAACCTTGGTAGAGGGAATATGGGCGAAGTTAGAGAAAAGGCCCTTAGAGAGCTTGCCGAGCCCGATGAAGACTAAAGACCTCTTTGTATAGTCATACCTCCAACCAGTACTCAACCTTTTGAATTAAAACTAGGACTTATCCATCTTTTGCCCATCTTTAAAGGAAGTTCCGGAGAGGACCCACACAAACATCTTAAGGATTTTCATATGGTTTGTGATTCCATGAGGCCTTACGGCATCTCGAAAGAACAACTAAATTTACGAGCCTTTCCTTTTTCCCTTACGGATGTAGCAAAGACATGGCTCTACTACTTAGAACCGGGATCCATAACCACTTGGAGTAGTCTAAAAAAGAAATTCTTAGAGAATTTTTCCCCACCTCTAGAGCAACAATATTAGGAAAGAAATTTATGGGATAAGACAAGCCTTTGGAGAATCCCTTTTGCAAAACTGGGAAAGATTCAAAGAGCTTTGTGCTAGCTTTCCTTACCATCATATTTTTGACCCTTTCTTTAATTCAATATTTTTACTCTGTTCTTTTGTCTTCCAACAGGAATACGGTAGATGCGGCGGTGGGAGGAGCTCTAACCGACAAGACCCCCATCGAAGCACGGGAGCTCATTTCTAGAATGGTAGAAAATTCTTAAAGCTTTGGGAATAGAGCATTGGAGCTTGACAATTCTCTAACAAAAGAGGTAAGTGAATTAAAATCACAAATGTTAAATATGACTATTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTGTTCAAAAATACGACCCCCACGGTAATACATACAATTCGGGGTGGAGAGACAACCCAAACTTAAGATGGGGGAATGACAACCAAAAGCATACACAAGCACCACCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACCGTCATAAGCAAGATGGATGGGAAAGGCAAACTTCTGGCTCAACCGGACCATGCTAATGTAAGTGTCATTTCACTAAGGAGTGATAAGATTCTTGACACCCCCACCACCAAAGAGAAAAAGGTAACTTCCAAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGGTGAAACAAACCCCTCACCATCTAATTCTAAAAATGATAAATCTCCTCTTAATGATTTTACTCCTTACATACCCAAACCTCCTTTTCCCTCTAGGTTGGCTCTAAAAAAGAAGGAAACACCCGAGGAGGAAGAACTCTTGGAGATGTTTAGAAAGGTGCAAATCAACTTGGCCCTTCTCGATGCAATCCAACAAGTCCCGAGGTATGCAAAGTTTCAAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGAGCAATGGTAAGTCAAAATGTTTCGGCTCTTCTAAAGAGTAATAATCCGAAAAAATGCAATGGCCCCGGTATGTTTTCTCTACCTTGTGTAA

mRNA sequence

ATGAAACTTCACCCCGATACGAGTCCAAGCCACCGAAATCACTTAAATCAGAGTTATAACGAAGAAGAACGGTCAAAAACAAGTTCAAGGGCAAAACCAGGAAATTGGAAAAGATCGGACGAACCAGATCGCACTACGTGGCATCACCAGATCATGCCACACGTCCACCTCAAAGTCACGTGTTCGAACCCCAGGCGCGATCCTATTTTTCCTTTCATTTTTTCGCACGACCCAGAAACTCGATCCACGAACCGATTCTTTCCTCCACAACTCTTCAAGAATTTCATCAATCTTCATGGGCTAAGGAATACGGTAGATGCGGCGGTGGGAGGAGCTCTAACCGACAAGACCCCCATCGAAGCACGGGAGCTCATTTCTAGAATGGTAGAAAATTCTTAAAGCTTTGGGAATAGAGCATTGGAGCTTGACAATTCTCTAACAAAAGAGGTAAGTGAATTAAAATCACAAATGTTAAATATGACTATTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGGTGATCGAGGATGTAAACATTGTTCAAAAATACGACCCCCACGGTAATACATACAATTCGGGGTGGAGAGACAACCCAAACTTAAGATGGGGGAATGACAACCAAAAGCATACACAAGCACCACCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACCGTCATAAGCAAGATGGATGGGAAAGGCAAACTTCTGGCTCAACCGGACCATGCTAATGTAAGTGTCATTTCACTAAGGAGTGATAAGATTCTTGACACCCCCACCACCAAAGAGAAAAAGGTAACTTCCAAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGGTGAAACAAACCCCTCACCATCTAATTCTAAAAATGATAAATCTCCTCTTAATGATTTTACTCCTTACATACCCAAACCTCCTTTTCCCTCTAGGTTGGCTCTAAAAAAGAAGGAAACACCCGAGGAGGAAGAACTCTTGGAGATGTTTAGAAAGGTGCAAATCAACTTGGCCCTTCTCGATGCAATCCAACAAGTCCCGAGGTATGCAAAGTTTCAAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGAGCAATGGTAAGTCAAAATGTTTCGGCTCTTCTAAAGAGTAATAATCCGAAAAAATGCAATGGCCCCGGTATGTTTTCTCTACCTTGTGTAA

Coding sequence (CDS)

ATGAAACTTCACCCCGATACGAGTCCAAGCCACCGAAATCACTTAAATCAGAGTTATAACGAAGAAGAACGGTCAAAAACAAGTTCAAGGGCAAAACCAGGAAATTGGAAAAGATCGGACGAACCAGATCGCACTACGTGGCATCACCAGATCATGCCACACGTCCACCTCAAAGTCACGTGTTCGAACCCCAGGCGCGATCCTATTTTTCCTTTCATTTTTTCGCACGACCCAGAAACTCGATCCACGAACCGATTCTTTCCTCCACAACTCTTCAAGAATTTCATCAATCTTCATGGGCTAAGGAATACGGTAGATGCGGCGGTGGGAGGAGCTCTAACCGACAAGACCCCCATCGAAGCACGGGAGCTCATTTCTAGAATGGTAGAAAATTCTTAA

Protein sequence

MKLHPDTSPSHRNHLNQSYNEEERSKTSSRAKPGNWKRSDEPDRTTWHHQIMPHVHLKVTCSNPRRDPIFPFIFSHDPETRSTNRFFPPQLFKNFINLHGLRNTVDAAVGGALTDKTPIEARELISRMVENS

Homology

[Close]

BLAST of MELO3C035488.2 vs. TrEMBL
Match: tr|A0A1S3CD34|A0A1S3CD34_CUCME (uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 84  NRFFPPQLFKNFIN--LHGLRNTVDAAVGGALTDKTPIEARELISRMVENS 133
           +  F P L + F +  L   R TVDAA GGAL +KTP EARELISRM ENS
Sbjct: 154 HHIFDPSLIQYFYSGLLSFDRITVDAAAGGALVNKTPTEARELISRMAENS 204

The following BLAST results are available for this feature:

BLAST of MELO3C035488.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C035488.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035488.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035488.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CD34\|A0A1S3CD34_CUCME	7.0e-04	58.82	uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035488.2.1	MELO3C035488.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..45

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035488.2	Wax gourd	medwgoB176
MELO3C035488.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035488.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035488.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C035488.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035488.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C035488.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035488.2	Cucurbita pepo (Zucchini)	cpemedB583
MELO3C035488.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035488.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035488.2	Cucumber (Chinese Long) v2	cumedB173
MELO3C035488.2	Melon (DHL92) v3.6.1	medmedB072
MELO3C035488.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035488.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C035488.2	Watermelon (97103) v1	medwmB143
MELO3C035488.2	Silver-seed gourd	carmedB0452
MELO3C035488.2	Silver-seed gourd	carmedB1052
MELO3C035488.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035488.2	Watermelon (97103) v2	medwmbB142