MELO3C035465.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035465.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionNBS-LRR type resistance protein
Locationchr12 : 5301778 .. 5302212 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCAACTTTTAATATGTATAAAAAATAAATAATATTATTTTTTTCATGCAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGTAGTCTTACAATCATAACAGCGGGTCAAAGTCGTTTCTACAACGACAACACGAGTTCGCTGAGAAAAAGGGGAGTCGCTCGACCGTGTAGAGTTGTTTCAGAAAACACACGTTCGAGCCGAGACGTTCGTATCACAGGTCGCACAGGATGCGCATGTAAGTTATAGAACGAACTCTTATGCCCTTATTAATTATCCTCTTTCATTATATATTTTTGCGTCACCTAACTTAGTTTTTAAATTTGTTGTAGAACCAAATGTTGGAACTCCAGTCCTAGCCTACCGCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGCACCGGTGGATTTAG

mRNA sequence

ATGATTTCAACTTTTAATATGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGTAGTCTTACAATCATAACAGCGGGTCAAAGTCGTTTCTACAACGACAACACGAGTTCGCTGAGAAAAAGGGGAGTCGCTCGACCGTGTAGAGTTGTTTCAGAAAACACACGTTCGAGCCGAGACGTTCGTATCACAGGTCGCACAGGATGCGCATGTAAAACCAAATGTTGGAACTCCAGTCCTAGCCTACCGCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGCACCGGTGGATTTAG

Coding sequence (CDS)

ATGATTTCAACTTTTAATATGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGTAGTCTTACAATCATAACAGCGGGTCAAAGTCGTTTCTACAACGACAACACGAGTTCGCTGAGAAAAAGGGGAGTCGCTCGACCGTGTAGAGTTGTTTCAGAAAACACACGTTCGAGCCGAGACGTTCGTATCACAGGTCGCACAGGATGCGCATGTAAAACCAAATGTTGGAACTCCAGTCCTAGCCTACCGCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGCACCGGTGGATTTAG

Protein sequence

MISTFNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVRITGRTGCACKTKCWNSSPSLPQRVVSHSLRMRYAIRHRWI
Homology
[Close]
BLAST of MELO3C035465.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-15
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 8   SNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVRITGRT 67
           SNH RTRLLDRSSLTII AG S FYND+ SSL++ G        S +   +   + T   
Sbjct: 18  SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEG--------SRSIVWNCSEKHTFEL 77

Query: 68  GCACK-------TKCWNSSPSLPQRVVSHSLRMRYAIR 99
           G +C+        KCWNS+PSLPQR+V+HSLRM+YAIR
Sbjct: 78  GHSCRRLPRMRIIKCWNSNPSLPQRIVTHSLRMKYAIR 107

[Close]
BLAST of MELO3C035465.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 8   SNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVRITGRT 67
           SNH RTRLLDRSSLTII AG S FYND+ SSL++ G        S +   +   + T   
Sbjct: 18  SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEG--------SRSIVWNCSEKHTFEL 77

Query: 68  GCACK-------TKCWNSSPSLPQRVVSHSLRMRYAIR 99
           G +C+        KCWNS+PSLPQR+V+HSLRM+YAIR
Sbjct: 78  GHSCRRLPRMRIIKCWNSNPSLPQRIVTHSLRMKYAIR 107

The following BLAST results are available for this feature:
BLAST of MELO3C035465.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34241.13.5e-1553.06NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C035465.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035465.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035465.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GCP2|E5GCP2_CUCME2.3e-1553.06NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035465.2.1MELO3C035465.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035465.2Silver-seed gourdcarmedB0452
MELO3C035465.2Silver-seed gourdcarmedB1052
MELO3C035465.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035465.2Watermelon (97103) v2medwmbB142
MELO3C035465.2Wax gourdmedwgoB176
MELO3C035465.2Cucumber (Gy14) v2cgybmedB009
MELO3C035465.2Cucumber (Gy14) v1cgymedB371
MELO3C035465.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035465.2Cucurbita maxima (Rimu)cmamedB451
MELO3C035465.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035465.2Cucurbita moschata (Rifu)cmomedB439
MELO3C035465.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035465.2Cucurbita pepo (Zucchini)cpemedB583
MELO3C035465.2Wild cucumber (PI 183967)cpimedB011
MELO3C035465.2Cucumber (Chinese Long) v2cumedB010
MELO3C035465.2Bottle gourd (USVL1VR-Ls)lsimedB259
MELO3C035465.2Watermelon (Charleston Gray)medwcgB141
MELO3C035465.2Watermelon (97103) v1medwmB143