MELO3C035455.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035455.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr12 : 15152736 .. 15153202 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGACAAGCTTCCTCAGGTAAAGGTGAAGGATGGAATTTTGTCCTCTACAACCCTTCATCGCATAATTGCAGTCAACAAGAACAAGGCTAAGCTAAAATGCCTCAAAACCAAACAAGATGGTAAATCAGAGGTTGAGAAAGTGGAAGATGAGCATGAAGATGAGAAACAAAAAGATGATGTCCCACTAAAACGCAAACGGCAAGGCGAGAAGGAGGCCTCTTGATCAAAACCAGCAAAATCCTATAAGGCCAAGGACTCTAAGGAAACCTTATCGCATGCGTCCACAAATAAGTCCCAAGAAGAAGAAGCCCACAGAACTCCCCTCACCCAATAAATTTTAAATCCTTTAAAGCTACCAGCTCTCAAACTCCTACTAAGTCTAAAACGCCACCACCTCCCAAAAAAATCCAAATCGTTAATTTGAACCCAACAAATCCAAAATACCTCTCATTCTTCCAGGCAAGA

mRNA sequence

TTGGACAAGCTTCCTCAGGTAAAGGTGAAGGATGGAATTTTGTCCTCTACAACCCTTCATCGCATAATTGCAGTCAACAAGAACAAGGCTAAGCTAAAATGCCTCAAAACCAAACAAGATGGTAAATCAGAGGTTGAGAAAGTGGAAGATGAGCATGAAGATGAGAAACAAAAAGATGATGTCCCACTAAAACGCAAACGGCAAGGCGAGAAGGAGGCCTCTTGATCAAAACCAGCAAAATCCTATAAGGCCAAGGACTCTAAGGAAACCTTATCGCATGCGTCCACAAATAAGTCCCAAGAAGAAGAAGCCCACAGAACTCCCCTCACCCAATAAATTTTAAATCCTTTAAAGCTACCAGCTCTCAAACTCCTACTAAGTCTAAAACGCCACCACCTCCCAAAAAAATCCAAATCGTTAATTTGAACCCAACAAATCCAAAATACCTCTCATTCTTCCAGGCAAGA

Coding sequence (CDS)

TTGGACAAGCTTCCTCAGGTAAAGGTGAAGGATGGAATTTTGTCCTCTACAACCCTTCATCGCATAATTGCAGTCAACAAGAACAAGGCTAAGCTAAAATGCCTCAAAACCAAACAAGATGGTAAATCAGAGGTTGAGAAAGTGGAAGATGAGCATGAAGATGAGAAACAAAAAGATGATGTCCCACTAAAACGCAAACGGCAAGGCGAGAAGGAGGCCTCTTGA

Protein sequence

LDKLPQVKVKDGILSSTTLHRIIAVNKNKAKLKCLKTKQDGKSEVEKVEDEHEDEKQKDDVPLKRKRQGEKEAS

Homology

[Close]

BLAST of MELO3C035455.2 vs. NCBI nr
Match: KGN57727.1 (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 7.5e-07
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   LDKLPQVKVKDGILSSTTLHRIIAVNKNKAKLKCLKTKQDGK 43
           L+KLPQV+VKDGI   +TLHRIIA++KNKAK+KCLKTK+  K
Sbjct: 101 LEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCK 142

[Close]

BLAST of MELO3C035455.2 vs. TrEMBL
Match: tr|A0A0A0LAN0|A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-07
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   LDKLPQVKVKDGILSSTTLHRIIAVNKNKAKLKCLKTKQDGK 43
           L+KLPQV+VKDGI   +TLHRIIA++KNKAK+KCLKTK+  K
Sbjct: 101 LEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCK 142

The following BLAST results are available for this feature:

BLAST of MELO3C035455.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57727.1	7.5e-07	71.43	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]

BLAST of MELO3C035455.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035455.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035455.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAN0\|A0A0A0LAN0_CUCSA	5.0e-07	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035455.2.1	MELO3C035455.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 38..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..74

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035455.2	Cucumber (Chinese Long) v3	cucmedB015
MELO3C035455.2	Cucumber (Chinese Long) v3	cucmedB025
MELO3C035455.2	Cucumber (Gy14) v2	cgybmedB015
MELO3C035455.2	Cucumber (Gy14) v1	cgymedB527
MELO3C035455.2	Cucumber (Gy14) v1	cgymedB529
MELO3C035455.2	Cucurbita maxima (Rimu)	cmamedB421
MELO3C035455.2	Cucurbita pepo (Zucchini)	cpemedB562
MELO3C035455.2	Wild cucumber (PI 183967)	cpimedB017
MELO3C035455.2	Cucumber (Chinese Long) v2	cumedB016
MELO3C035455.2	Bottle gourd (USVL1VR-Ls)	lsimedB186
MELO3C035455.2	Watermelon (97103) v1	medwmB162