MELO3C035441.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035441.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr12 : 14589274 .. 14589509 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGATCCAAATGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTGTACGAAAGGCTATTTAGAAGTATTGAATGTGCTGAGAAGGTAATGGAGAATGATTTCAGCATCACTTTTTCACTACCCACTGACCTTTTTGGCATTAGTCGAAAGACTTCTGTGCTTCGAGAGGATATCATTGATCTTTGTAACATGAACGAAGTCAAAACGTTTACATTGGTGGCCTATATGAT

mRNA sequence

AAAGATCCAAATGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTGTACGAAAGGCTATTTAGAAGTATTGAATGTGCTGAGAAGGTAATGGAGAATGATTTCAGCATCACTTTTTCACTACCCACTGACCTTTTTGGCATTAGTCGAAAGACTTCTGTGCTTCGAGAGGATATCATTGATCTTTGTAACATGAACGAAGTCAAAACGTTTACATTGGTGGCCTATATGAT

Coding sequence (CDS)

AAAGATCCAAATGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTGTACGAAAGGCTATTTAGAAGTATTGAATGTGCTGAGAAGGTAATGGAGAATGATTTCAGCATCACTTTTTCACTACCCACTGACCTTTTTGGCATTAGTCGAAAGACTTCTGTGCTTCGAGAGGATATCATTGATCTTTGTAACATGAACGAAGTCAAAACGTTTACATTGGTGGCCTATATG

Protein sequence

KDPNGFEKLLIDAEKPLYERLFRSIECAEKVMENDFSITFSLPTDLFGISRKTSVLREDIIDLCNMNEVKTFTLVAYM
Homology
[Close]
BLAST of MELO3C035441.2 vs. NCBI nr
Match: XP_011657210.1 (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 28 AEKVMENDFSITFSLPTDLFGISRKTSVLREDIIDLCNMNEVKTFTLVAYM 79
          AEK+ME D SIT  LP  +FGISRKTSVLREDIIDLCNMNEVKTFTLVAYM
Sbjct: 26 AEKIMEKDSSITIPLPVGIFGISRKTSVLREDIIDLCNMNEVKTFTLVAYM 76

[Close]
BLAST of MELO3C035441.2 vs. NCBI nr
Match: XP_011656204.1 (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12
Identity = 44/64 (68.75%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 15  KPLYERLFRSIECAEKVMENDFSITFSLPTDLFGISRKTSVLREDIIDLCNMNEVKTFTL 74
           K   ERL R    AEKVM+ D SI + LP  LFGI RKT VLREDIIDLCNM EV TFTL
Sbjct: 236 KDAMERLLR---FAEKVMDKDSSIRYQLPISLFGIGRKTFVLREDIIDLCNMREVNTFTL 295

Query: 75  VAYM 79
           VAYM
Sbjct: 296 VAYM 296

The following BLAST results are available for this feature:
BLAST of MELO3C035441.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657210.11.8e-1484.31PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
XP_011656204.12.1e-1268.75PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
BLAST of MELO3C035441.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035441.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035441.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035441.2.1MELO3C035441.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035441.2Cucumber (Gy14) v2cgybmedB022
MELO3C035441.2Cucurbita maxima (Rimu)cmamedB223
MELO3C035441.2Cucurbita maxima (Rimu)cmamedB414
MELO3C035441.2Cucurbita maxima (Rimu)cmamedB426
MELO3C035441.2Cucurbita pepo (Zucchini)cpemedB556
MELO3C035441.2Wild cucumber (PI 183967)cpimedB025
MELO3C035441.2Cucumber (Chinese Long) v2cumedB024
MELO3C035441.2Bottle gourd (USVL1VR-Ls)lsimedB184
MELO3C035441.2Bottle gourd (USVL1VR-Ls)lsimedB193
MELO3C035441.2Watermelon (Charleston Gray)medwcgB126
MELO3C035441.2Watermelon (Charleston Gray)medwcgB135
MELO3C035441.2Watermelon (97103) v1medwmB156
MELO3C035441.2Watermelon (97103) v1medwmB168
MELO3C035441.2Silver-seed gourdcarmedB0049
MELO3C035441.2Cucumber (Chinese Long) v3cucmedB025
MELO3C035441.2Watermelon (97103) v2medwmbB126
MELO3C035441.2Watermelon (97103) v2medwmbB134
MELO3C035441.2Wax gourdmedwgoB182