MELO3C035425.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035425.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Beta-galactosidase
Location	chr12 : 12905755 .. 12906152 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCAAAATGAGAAGAAAAATGCACAACTCTTGTGGGCTTGGGCTCCAGAACCTATGAAAGACACACTATAAGAAAATTGTAAATTTGTGGCAAACCTTCTTTTGGAACAAAAAAAAGGTCATGGTTGATTTTAACGACTACTTCTGCTACATGACGAATGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCTAAGTGAATACAAAGGGTCATGTGCTTTATGCTTTCGTTAATAAAAGATACATTGGGTCGCAATGGGAGAGAAATGACCTGAGTTTTGTGTTTGAGAAACCTATGAGAAACCCATTCTACTAAAATCGAGAACCAACACAATAACTCTTTTGACTGCCACAATTGGGTTGAAGAATTACGACGCATTTTATGTTAT

mRNA sequence

GAGCAAAATGAGAAGAAAAATGCACAACTCTTGTGGGCTTGGGCTCCAGAACCTATGAAAGACACACTATAAGAAAATTGTAAATTTGTGGCAAACCTTCTTTTGGAACAAAAAAAAGGTCATGGTTGATTTTAACGACTACTTCTGCTACATGACGAATGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCTAAGTGAATACAAAGGGTCATGTGCTTTATGCTTTCGTTAATAAAAGATACATTGGGTCGCAATGGGAGAGAAATGACCTGAGTTTTGTGTTTGAGAAACCTATGAGAAACCCATTCTACTAAAATCGAGAACCAACACAATAACTCTTTTGACTGCCACAATTGGGTTGAAGAATTACGACGCATTTTATGTTAT

Coding sequence (CDS)

ATGGTTGATTTTAACGACTACTTCTGCTACATGACGAATGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCTAA

Protein sequence

MVDFNDYFCYMTNVDTNGTSSLQNVTL

Homology

[Close]

BLAST of MELO3C035425.2 vs. NCBI nr
Match: XP_008452141.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-04
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 2   VDFNDYFCYMTNVDTNGTSSLQNVTL 28
           VDF+DYF YMTNVDTNGTSSLQNVTL
Sbjct: 466 VDFSDYFWYMTNVDTNGTSSLQNVTL 491

[Close]

BLAST of MELO3C035425.2 vs. TrEMBL
Match: tr|A0A1S3BT39|A0A1S3BT39_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103493239 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-04
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 2   VDFNDYFCYMTNVDTNGTSSLQNVTL 28
           VDF+DYF YMTNVDTNGTSSLQNVTL
Sbjct: 466 VDFSDYFWYMTNVDTNGTSSLQNVTL 491

The following BLAST results are available for this feature:

BLAST of MELO3C035425.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452141.1	4.8e-04	92.31	PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo]	[more]

BLAST of MELO3C035425.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035425.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035425.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BT39\|A0A1S3BT39_CUCME	3.2e-04	92.31	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103493239 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035425.2.1	MELO3C035425.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035425.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035425.2	Cucumber (Gy14) v1	cgymedB528
MELO3C035425.2	Cucurbita maxima (Rimu)	cmamedB221
MELO3C035425.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C035425.2	Cucurbita moschata (Rifu)	cmomedB209
MELO3C035425.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C035425.2	Cucurbita pepo (Zucchini)	cpemedB006
MELO3C035425.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C035425.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035425.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035425.2	Melon (DHL92) v3.6.1	medmedB071
MELO3C035425.2	Bottle gourd (USVL1VR-Ls)	lsimedB192
MELO3C035425.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035425.2	Silver-seed gourd	carmedB0000
MELO3C035425.2	Silver-seed gourd	carmedB0967
MELO3C035425.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035425.2	Watermelon (97103) v2	medwmbB132
MELO3C035425.2	Wax gourd	medwgoB176