MELO3C035418.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035418.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr12 : 4097055 .. 4100650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTCAACCACTGCAGGAGTGATCGGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTAGCAAAACTTTATCTCTAAGTAATGTTTTATATGTCCCTTCCCTACGTAGGAACTTGGTGTCTGGGAGTCTGTTGAGTCGGGTCAGGCTTAAAACTGTACTGGAAGGTGACAAAGTTGTCCTCACCAAAAACGGAGAATTTGTCGGTAAGGGGTATCTATCTAATGATCTGTTTGTGCTAAACACAATTTCCATGAATGCGAATACTTCTAGTTCTGTCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAACTTACAGACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACATTTCAAACCAGTTGAATCTAGAACTACTGATCTGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAAAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGACTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAAGGCAGAATATGAAAATCAGTTAGGAAAAAAGATAAAAAGAGTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAACTCTTAAAGACTTTTGTGAGTCAAATGGTATACTCCATGAATTTACTACTGCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAAAAGAACTCTTAAAGAAATGATGAATGCATGTTATTAAGCTCCGGTCTATCTGATAATATGTGGGGAGAAGCTGTATTGTCTGCGTGTTTTGTTCATTACAGGATTCCCCACAAAAGGCTAGACAAAACTCCCTACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTATTTGAAGGTTTGGGGATGCTTGGCTAAGGTACCATTTTCTGCATTGAAGAAATCTACGGTATGGTCTAAAACCTTTTACTGTATATTTATCGGGTATGCTCAAAATAGTACTGCATATAGGTTTATGTGTTTAAATGATAAAACTATAAACGAATCTAGAGATGCATAATTCTTTGAGCATGTATTTCCATTAAAGCAATCATTGTCTGCTCCTGGCCTATCTAAAAGAATCATGATCCTGAAAACCCCTCAATTGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTCCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGATCCAGATTTCCTAAGCACTTTCATAGTGGAAAGGCGTGATGAAATTTACTGTAACTTCACAAACTTATTCTTAATAGATGAGGATCCTAAAACTTATCAAGAAGCACTGAACTCTGTAGATTCAAGTATGTGGAAAGAGGCTATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACTTAGTGGACCTTCCTATGGGAAAGAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCTATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACTCAGAAACAAGGCATTGATTATTTTGACACATATTCCCTTATAACTAAGATAACCACAATTAGAGACTTGATTGTATTAGCTGCAATACATAGCTTTCTTATTCACCAAATGGACGTAAAAACTTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTCAAATTTCTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAGCAAGTTCCCAAGCAGTGGTATGAAAATTTTAATAATACGTTGATAAACAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAAGTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTGATGACAAGTTAATCTTTGGAACAAACATGGAATTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTTATATATTTGTGAATGATGAACTTGGATTATATATTCTGTGGTTATGTCTCCCATTCATATTTTAGTTTAGTTTATCTTTGGTTCACAATGCATGTATTGGTTTCCAAGTTTGAATTTCCTTTTTAATTAAATATTAAATAATATCACAGAGAAAAAAAAATAAAAAGCTTTGAAAATTTAGGGATGGTAAGAACTCTAACGGCATATGAATGATAAAATAGTTGTTCAACTCAAATTCTTTGAGCCTGTGGAATGAATGAAAGAATCGAGCGAACTAAGCGCCTAGAAAATCAGGGGTTCTGACTTTGGCAAGTATCCCAGTCGGGTAGTCAGCCTTATCTTGAGTTGGCGAGGGTGAAGGAGGAAAACATTTACAAAATAACAAAATCTTAGATTCTATTGATGTCTATTGACATCACTGAAGTCTCTATGAGTGATAGATATGAAATTTTGTTATGAAAATGTCTCTTACTAATCATTATATTATCCTCAAACTTTTGATGATAAGAGTTAAGCTTTCAAACTTATACGAATGTTAAAATTAGAGCCTTAACTTTACATAGTCGTAAAAATTATAATAAGATTTTAATTTTAGTCCAATTTCTAGGATTGTTGCAAGTAATTTGAGTTTAACAGTTGTATATAAGCTTCAAGGTCGGATTTCTATAATGGAAAGTTAAAAAGACCCATATATTTTGAGAATACTAAGGCAACGGTTTTGCAAGGTCGTTGACGACCAAATCAATGACTTCATGAATAACAATCATTCTTTGGTCTTCTTCATATCTATATTATTTGAATGGTTTTGAATTTATTATTATAACTATTTTTCTAGAGAACAAAAATATTGTTTTCTTTGACCTATTTTCAACGGTTGATTTTTACTAGAATACAACCAAATAACAATCCTTTTTCTTTGTGCAAACTTCAAACTTCTTTTCCACCTTGTTTTTCTCCCAAATCTTATTTTCTAGTTTAACATAACAAGGAAATGAGTTGATATTTATAGCTAACAAGGAAATGAGTTGATATTTACAGTTAACAAGGAAATGAGTTGATCATTATAGTTAACAACGAAATGAGTTGATAATTATAGTTAACGAAATGAGTTGATAATTATAGTTAGTAGTCATTATGATCTATCGTTGATTATAGTCGTATGTGACTAGAGCGTAGATTATTCTAATTGGGTTCAATTATTTAGTTTGAATAGAAAATAGTAACCACTTCGATATAGCAAAGAAGATTGTAAAATAGAGTTAATTGTAATTAATTTTTGGATTACAACATAGTATTTACAGTAAGTAGATATGAATAGTTTTAATAGTTGGAGCCTCAAAAGTTAAATAACTCACTCCACCAACATATAAATTATAATAAGTTCTTAATAATCATGTTTTTCTTTTGTGCTATTCTAAATACAGTTACAAAACAGTAACTAAAAGTAAGCTTCCTTCAACAGTAATTAACATATACTCTCTTTCTGAAGATCAAAGGTCTGATCCCTCGTCTCGACCATAA

mRNA sequence

ATGGGAAACTCAACCACTGCAGGAGTGATCGGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTAGCAAAACTTTATCTCTAAGTAATGTTTTATATGTCCCTTCCCTACGTAGGAACTTGGTGTCTGGGAGTCTGTTGAGTCGGGTCAGGCTTAAAACTGTACTGGAAGGTGACAAAGTTGTCCTCACCAAAAACGGAGAATTTGTCGGTAAGGGGTATCTATCTAATGATCTGTTTGTGCTAAACACAATTTCCATGAATGCGAATACTTCTAGTTCTGTCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAACTTACAGACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACATTTCAAACCAGTTGAATCTAGAACTACTGATCTGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAAAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGACTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATTTACAAAACAGTAACTAAAAGTAAGCTTCCTTCAACAGTAATTAACATATACTCTCTTTCTGAAGATCAAAGGTCTGATCCCTCGTCTCGACCATAA

Coding sequence (CDS)

ATGGGAAACTCAACCACTGCAGGAGTGATCGGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTAGCAAAACTTTATCTCTAAGTAATGTTTTATATGTCCCTTCCCTACGTAGGAACTTGGTGTCTGGGAGTCTGTTGAGTCGGGTCAGGCTTAAAACTGTACTGGAAGGTGACAAAGTTGTCCTCACCAAAAACGGAGAATTTGTCGGTAAGGGGTATCTATCTAATGATCTGTTTGTGCTAAACACAATTTCCATGAATGCGAATACTTCTAGTTCTGTCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAACTTACAGACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACATTTCAAACCAGTTGAATCTAGAACTACTGATCTGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAAAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGACTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATTTACAAAACAGTAACTAAAAGTAAGCTTCCTTCAACAGTAATTAACATATACTCTCTTTCTGAAGATCAAAGGTCTGATCCCTCGTCTCGACCATAA

Protein sequence

MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKVVLTKNGEFVGKGYLSNDLFVLNTISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKLTDLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGSIYKTVTKSKLPSTVINIYSLSEDQRSDPSSRP

Homology

[Close]

BLAST of MELO3C035418.2 vs. NCBI nr
Match: ADN33807.1 (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 355.9 bits (912), Expect = 1.1e-94
Identity = 180/207 (86.96%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           MGNS TAGVIGKGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLL+R  LK VLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKLTD 120
           VLTKNG FVGKGYLSN LFVLNTISMNAN SSS Y+IES NLWHGRLGHVNFASIRKL D
Sbjct: 426 VLTKNGNFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKCP+C+ESKFHKK FKPVE RTT+LLELI+SDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTELLELIYSDLADFRTTASRGGKNY 545

Query: 181 YVSFVDDYSRFTKIYLIKTKDEAGSIY 208
           YVSFVDDYSRFTKIYLIKTK+EA S++
Sbjct: 546 YVSFVDDYSRFTKIYLIKTKNEAVSMF 572

[Close]

BLAST of MELO3C035418.2 vs. NCBI nr
Match: XP_019103866.1 (PREDICTED: uncharacterized protein LOC109134551 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 245.4 bits (625), Expect = 2.0e-61
Identity = 126/212 (59.43%), Postives = 155/212 (73.11%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           MGN+ TAGV+G+GKV LKLT  KTLSL NVLYVP++RRNLV G+LL++  LK V E +KV
Sbjct: 190 MGNAATAGVLGQGKVTLKLTYGKTLSLLNVLYVPTMRRNLVFGALLNKASLKIVFEANKV 249

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTIS-----MNANTSSSVYVIESVNLWHGRLGHVNFASI 120
            +T+ GEFVGKG+LS  LF+LN +S     +N     S Y++ES+N  HGRLGHVN ASI
Sbjct: 250 AMTRGGEFVGKGHLSGGLFILNVVSSVNPAINKTVCGSAYIVESLNSCHGRLGHVNVASI 309

Query: 121 RKLTDLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSR 180
           ++L  L LI    S E  KCP CVE+KF KK  K V  R T LLEL+H DLADF+ T S+
Sbjct: 310 KRLRTLDLIPNMSSTEFSKCPACVEAKFTKKPCKTVTQRATQLLELVHKDLADFQNTRSK 369

Query: 181 GGKNYYVSFVDDYSRFTKIYLIKTKDEAGSIY 208
           GGK +Y+SFVDDYSRFTK+YL+K K EAG  +
Sbjct: 370 GGKFWYISFVDDYSRFTKLYLLKAKIEAGGAF 401

[Close]

BLAST of MELO3C035418.2 vs. NCBI nr
Match: CAN78262.1 (hypothetical protein VITISV_006704 [Vitis vinifera])

HSP 1 Score: 216.9 bits (551), Expect = 7.6e-53
Identity = 113/205 (55.12%), Postives = 146/205 (71.22%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           MG+S +  VIGKGKV+LKLTS K L+L +VL+VP +R NLVS SLL +  +K + E DK+
Sbjct: 224 MGDSRSTPVIGKGKVLLKLTSGKVLALCDVLHVPDIRWNLVSVSLLGKAGVKILFESDKI 283

Query: 61  VLTKNGEFVGKGYLSNDLFVLNT--ISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKL 120
           VLTKN  FVGKGY +  LF LN   I +N  +SSS Y+++S + WHGRLGHVNF+ ++K+
Sbjct: 284 VLTKNDAFVGKGYCNQGLFRLNVFYIIINNTSSSSAYIVDSCDTWHGRLGHVNFSYMKKM 343

Query: 121 TDLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGK 180
            +L LI        GKC  CVESK  KK  K VE R  DLL LIHSDL D K T +R GK
Sbjct: 344 VELSLIPKLSLENHGKCESCVESKTTKKSCKSVE-RELDLLSLIHSDLGDLKNTMTRDGK 403

Query: 181 NYYVSFVDDYSRFTKIYLIKTKDEA 204
            +Y++F+DDYSR+T++YL++ KDEA
Sbjct: 404 RFYITFIDDYSRYTRVYLLRNKDEA 427

[Close]

BLAST of MELO3C035418.2 vs. NCBI nr
Match: KYP64289.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 214.2 bits (544), Expect = 4.9e-52
Identity = 120/228 (52.63%), Postives = 158/228 (69.30%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           +G+S T  V+GKGKV++KLTS KTL+L++VL+VPS+R NLVS +LL +V +K   E DK+
Sbjct: 52  LGDSRTTPVLGKGKVLIKLTSGKTLALNDVLHVPSIRVNLVSVALLGKVGVKVSFESDKI 111

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTISMNA-NTSSSVYVIESVNLWHGRLGHVNFASIRKLT 120
           V+TKN  FVGKGY    LFVLN   + + + SSS Y+I+S  +WH RLGHVN A + KL 
Sbjct: 112 VMTKNNVFVGKGYCDQGLFVLNVSEITSESASSSAYMIDSYGMWHARLGHVNSAYVLKLK 171

Query: 121 DLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKN 180
            L +IN  +  + GKC ICVESK  KK    V  R ++ L LIH DLAD K T SRGGKN
Sbjct: 172 RLGMINMHD-EQIGKCEICVESKLIKKTCHSV-FRESEPLSLIHYDLADLKQTMSRGGKN 231

Query: 181 YYVSFVDDYSRFTKIYLIKTKDEAGSI---YKTVTKSKLPSTVINIYS 225
           Y+V+F+DD+SR+TK+YLIK KDEA  +   YK   +++L   +  I S
Sbjct: 232 YFVTFIDDFSRYTKVYLIKHKDEAFDMFLSYKAEVENQLNKRIKRIRS 277

[Close]

BLAST of MELO3C035418.2 vs. NCBI nr
Match: PWA78284.1 (hypothetical protein CTI12_AA217490 [Artemisia annua])

HSP 1 Score: 210.3 bits (534), Expect = 7.1e-51
Identity = 111/217 (51.15%), Postives = 151/217 (69.59%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           MGN T++ + GKGKVILKLTS K L LSNVL+VP++ +NL+SG +LS    K V E DK 
Sbjct: 118 MGNGTSSKIEGKGKVILKLTSGKDLVLSNVLHVPNITKNLISGPILSNKGFKLVFESDKF 177

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTI-------SMNANTS-SSVYVIESVNLWHGRLGHVNF 120
           V+TK G +VGKGYL   LF L+ +       + NA TS +SVY+I+   LWH RLGHVNF
Sbjct: 178 VITKGGVYVGKGYLDQGLFKLSVVTDDNVINNNNAGTSTASVYMIDPSFLWHSRLGHVNF 237

Query: 121 ASIRKLTDLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTT 180
            S++++ +L ++      +  KC ICVESK+     K VE ++ ++L LIH+DL DFK T
Sbjct: 238 RSLQRMINLGMLPKCTMDKISKCEICVESKYTSHSHKSVE-KSNEILGLIHTDLCDFKAT 297

Query: 181 TSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGSIYKT 210
            S+GGKNYY++F+DD S+F  +YLI TKDEA +++KT
Sbjct: 298 PSKGGKNYYITFIDDCSKFCYVYLINTKDEALNMFKT 333

[Close]

BLAST of MELO3C035418.2 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 65/208 (31.25%), Postives = 109/208 (52.40%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           MGN++ + + G G + +K     TL L +V +VP LR NL+SG  L R   ++     K 
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKLTD 120
            LTK    + KG     L+  N        +++   I SV+LWH R+GH++   ++ L  
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEI-SVDLWHKRMGHMSEKGLQILAK 443

Query: 121 LRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKNY 180
             LI+ ++      C  C+  K H+  F+    R  ++L+L++SD+       S GG  Y
Sbjct: 444 KSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKY 503

Query: 181 YVSFVDDYSRFTKIYLIKTKDEAGSIYK 209
           +V+F+DD SR   +Y++KTKD+   +++
Sbjct: 504 FVTFIDDASRKLWVYILKTKDQVFQVFQ 530

[Close]

BLAST of MELO3C035418.2 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11
Identity = 61/217 (28.11%), Postives = 108/217 (49.77%), Query Frame = 0


Query: 20  TSSKTLSLSNVLYVPSLRRNLVSGSLL---SRVRLKTVLEGDKVVLTKNGEFVGKGYLSN 79
           TSS++L L+ VLYVP++ +NL+S   L   +RV ++      +V     G  + +G   +
Sbjct: 359 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 418

Query: 80  DLF-----VLNTISMNANTSSSVYVIESVNLWHGRLGHVNFASIRK-LTDLRLINTSESH 139
           +L+         +SM A+  S      + + WH RLGH + A +   +++  L   + SH
Sbjct: 419 ELYEWPIASSQAVSMFASPCSKA----THSSWHSRLGHPSLAILNSVISNHSLPVLNPSH 478

Query: 140 ETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKNYYVSFVDDYSR 199
           +   C  C  +K HK  F      ++  LE I+SD+       S     YYV FVD ++R
Sbjct: 479 KLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTR 538

Query: 200 FTKIYLIKTKDEAGS---IYKTVTKSKLPSTVINIYS 225
           +T +Y +K K +      I+K++ +++  + +  +YS
Sbjct: 539 YTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYS 570

[Close]

BLAST of MELO3C035418.2 vs. Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 68.9 bits (167), Expect = 8.4e-11
Identity = 58/225 (25.78%), Postives = 106/225 (47.11%), Query Frame = 0


Query: 16  ILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKVVLTKNGEFVGKGY-L 75
           I++L +   ++L +VL+      NL+S   L    +    +   V ++KNG  V K   +
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM 393

Query: 76  SNDLFVLNTISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKL------TDLRLINTSE 135
            N++ V+N  + + N         +  LWH R GH++   + ++      +D  L+N  E
Sbjct: 394 LNNVPVINFQAYSINAKHK----NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 136 SHETGKCPICVESKFHKKHFKPVESRT--TDLLELIHSDLADFKTTTSRGGKNYYVSFVD 195
                 C  C+  K  +  FK ++ +T     L ++HSD+    T  +   KNY+V FVD
Sbjct: 454 L-SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVD 513

Query: 196 DYSRFTKIYLIKTKDEAGSIYKT-VTKSKLPSTVINIYSLSEDQR 231
            ++ +   YLIK K +  S+++  V KS+    +  +Y   ++ R
Sbjct: 514 QFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGR 553

[Close]

BLAST of MELO3C035418.2 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-09
Identity = 58/217 (26.73%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 20  TSSKTLSLSNVLYVPSLRRNLVSGSLL---SRVRLKTVLEGDKVVLTKNGEFVGKGYLSN 79
           T S+ L+L N+LYVP++ +NL+S   L   + V ++      +V     G  + +G   +
Sbjct: 380 TKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439

Query: 80  DLF-----VLNTISMNANTSSSVYVIESVNLWHGRLGHVNFASIRK-LTDLRLINTSESH 139
           +L+         +S+ A+ SS      + + WH RLGH   + +   +++  L   + SH
Sbjct: 440 ELYEWPIASSQPVSLFASPSSKA----THSSWHARLGHPAPSILNSVISNYSLSVLNPSH 499

Query: 140 ETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKNYYVSFVDDYSR 199
           +   C  C+ +K +K  F      +T  LE I+SD+       S     YYV FVD ++R
Sbjct: 500 KFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTR 559

Query: 200 FTKIYLIKTKD---EAGSIYKTVTKSKLPSTVINIYS 225
           +T +Y +K K    E    +K + +++  + +   YS
Sbjct: 560 YTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYS 591

[Close]

BLAST of MELO3C035418.2 vs. TrEMBL
Match: tr|E5GBG5|E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 7.0e-95
Identity = 180/207 (86.96%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           MGNS TAGVIGKGKVILKLTS KTLSLSNVLYVPSLRRNLVSGSLL+R  LK VLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKLTD 120
           VLTKNG FVGKGYLSN LFVLNTISMNAN SSS Y+IES NLWHGRLGHVNFASIRKL D
Sbjct: 426 VLTKNGNFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKCP+C+ESKFHKK FKPVE RTT+LLELI+SDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTELLELIYSDLADFRTTASRGGKNY 545

Query: 181 YVSFVDDYSRFTKIYLIKTKDEAGSIY 208
           YVSFVDDYSRFTKIYLIKTK+EA S++
Sbjct: 546 YVSFVDDYSRFTKIYLIKTKNEAVSMF 572

[Close]

BLAST of MELO3C035418.2 vs. TrEMBL
Match: tr|A0A2N9H4B0|A0A2N9H4B0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.3e-60
Identity = 119/209 (56.94%), Postives = 165/209 (78.95%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           +G++ TA V+GKGKVILKLTS KTL+L+ VL+VP++RRNLVSGSLL++  LK V + +K+
Sbjct: 338 LGDARTAKVVGKGKVILKLTSGKTLALNTVLHVPNMRRNLVSGSLLNKAGLKLVFDSNKL 397

Query: 61  VLTKNGEFVGKGYLSNDLFVLNT--ISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKL 120
           +L++NG+FVGKG+    LFVL+    +MN  ++S  Y++ES++LWHGRLGHVN ASI+++
Sbjct: 398 ILSRNGDFVGKGFCHGGLFVLDAECENMNKASTSFAYIVESLDLWHGRLGHVNVASIKRM 457

Query: 121 TDLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGK 180
             L LI    + E  KC ICVE+K  KK FK VE R+++LLELIHSDL DFK T SRGGK
Sbjct: 458 KQLSLIPNLTNSEHPKCEICVEAKHFKKPFKTVE-RSSELLELIHSDLGDFKNTMSRGGK 517

Query: 181 NYYVSFVDDYSRFTKIYLIKTKDEAGSIY 208
            YY++F+DDYSR+T++YL+ +KDEA +++
Sbjct: 518 RYYITFIDDYSRYTRVYLLSSKDEAENMF 545

[Close]

BLAST of MELO3C035418.2 vs. TrEMBL
Match: tr|A0A2N9HRL5|A0A2N9HRL5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42550 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.4e-57
Identity = 116/209 (55.50%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           +G++ TA V+GKGKVILKLTS KTL+L+ VL+VP++RRNLVSGSLL++  LK V + +K+
Sbjct: 338 LGDARTAKVVGKGKVILKLTSGKTLALNIVLHVPNMRRNLVSGSLLNKAGLKLVFDSNKL 397

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTISMNANT--SSSVYVIESVNLWHGRLGHVNFASIRKL 120
           +L++NG+FV KG+    LFVL+    N NT  +S  Y++ES++LWHGRLGHVN ASI+++
Sbjct: 398 ILSRNGDFVSKGFCHGRLFVLDAECENMNTVSTSFAYIVESLDLWHGRLGHVNVASIKRM 457

Query: 121 TDLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGK 180
             L LI    + +  KC ICVE+K  KK FK  E R + LLELIHSDL DFK T SRGGK
Sbjct: 458 KQLSLIPNLTNSKHPKCEICVEAKHFKKPFKTAE-RNSKLLELIHSDLGDFKNTMSRGGK 517

Query: 181 NYYVSFVDDYSRFTKIYLIKTKDEAGSIY 208
            YY++F+DDYSR+T++YL+ +KDE  +++
Sbjct: 518 RYYITFIDDYSRYTRVYLLNSKDEVENMF 545

[Close]

BLAST of MELO3C035418.2 vs. TrEMBL
Match: tr|A5AT18|A5AT18_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006704 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.0e-53
Identity = 113/205 (55.12%), Postives = 146/205 (71.22%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           MG+S +  VIGKGKV+LKLTS K L+L +VL+VP +R NLVS SLL +  +K + E DK+
Sbjct: 224 MGDSRSTPVIGKGKVLLKLTSGKVLALCDVLHVPDIRWNLVSVSLLGKAGVKILFESDKI 283

Query: 61  VLTKNGEFVGKGYLSNDLFVLNT--ISMNANTSSSVYVIESVNLWHGRLGHVNFASIRKL 120
           VLTKN  FVGKGY +  LF LN   I +N  +SSS Y+++S + WHGRLGHVNF+ ++K+
Sbjct: 284 VLTKNDAFVGKGYCNQGLFRLNVFYIIINNTSSSSAYIVDSCDTWHGRLGHVNFSYMKKM 343

Query: 121 TDLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGK 180
            +L LI        GKC  CVESK  KK  K VE R  DLL LIHSDL D K T +R GK
Sbjct: 344 VELSLIPKLSLENHGKCESCVESKTTKKSCKSVE-RELDLLSLIHSDLGDLKNTMTRDGK 403

Query: 181 NYYVSFVDDYSRFTKIYLIKTKDEA 204
            +Y++F+DDYSR+T++YL++ KDEA
Sbjct: 404 RFYITFIDDYSRYTRVYLLRNKDEA 427

[Close]

BLAST of MELO3C035418.2 vs. TrEMBL
Match: tr|A0A151TB60|A0A151TB60_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_018881 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.3e-52
Identity = 120/228 (52.63%), Postives = 158/228 (69.30%), Query Frame = 0


Query: 1   MGNSTTAGVIGKGKVILKLTSSKTLSLSNVLYVPSLRRNLVSGSLLSRVRLKTVLEGDKV 60
           +G+S T  V+GKGKV++KLTS KTL+L++VL+VPS+R NLVS +LL +V +K   E DK+
Sbjct: 52  LGDSRTTPVLGKGKVLIKLTSGKTLALNDVLHVPSIRVNLVSVALLGKVGVKVSFESDKI 111

Query: 61  VLTKNGEFVGKGYLSNDLFVLNTISMNA-NTSSSVYVIESVNLWHGRLGHVNFASIRKLT 120
           V+TKN  FVGKGY    LFVLN   + + + SSS Y+I+S  +WH RLGHVN A + KL 
Sbjct: 112 VMTKNNVFVGKGYCDQGLFVLNVSEITSESASSSAYMIDSYGMWHARLGHVNSAYVLKLK 171

Query: 121 DLRLINTSESHETGKCPICVESKFHKKHFKPVESRTTDLLELIHSDLADFKTTTSRGGKN 180
            L +IN  +  + GKC ICVESK  KK    V  R ++ L LIH DLAD K T SRGGKN
Sbjct: 172 RLGMINMHD-EQIGKCEICVESKLIKKTCHSV-FRESEPLSLIHYDLADLKQTMSRGGKN 231

Query: 181 YYVSFVDDYSRFTKIYLIKTKDEAGSI---YKTVTKSKLPSTVINIYS 225
           Y+V+F+DD+SR+TK+YLIK KDEA  +   YK   +++L   +  I S
Sbjct: 232 YFVTFIDDFSRYTKVYLIKHKDEAFDMFLSYKAEVENQLNKRIKRIRS 277

The following BLAST results are available for this feature:

BLAST of MELO3C035418.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33807.1	1.1e-94	86.96	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_019103866.1	2.0e-61	59.43	PREDICTED: uncharacterized protein LOC109134551 [Beta vulgaris subsp. vulgaris]	[more]
CAN78262.1	7.6e-53	55.12	hypothetical protein VITISV_006704 [Vitis vinifera]	[more]
KYP64289.1	4.9e-52	52.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
PWA78284.1	7.1e-51	51.15	hypothetical protein CTI12_AA217490 [Artemisia annua]	[more]

BLAST of MELO3C035418.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035418.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10978\|POLX_TOBAC	1.1e-23	31.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
sp\|Q9ZT94\|POLR2_ARATH	1.3e-11	28.11	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
sp\|P04146\|COPIA_DROME	8.4e-11	25.78	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
sp\|Q94HW2\|POLR1_ARATH	4.6e-09	26.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of MELO3C035418.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GBG5\|E5GBG5_CUCME	7.0e-95	86.96	Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
tr\|A0A2N9H4B0\|A0A2N9H4B0_FAGSY	7.3e-60	56.94	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1	[more]
tr\|A0A2N9HRL5\|A0A2N9HRL5_FAGSY	3.4e-57	55.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42550 PE=4 SV=1	[more]
tr\|A5AT18\|A5AT18_VITVI	5.0e-53	55.12	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006704 PE=4 SV=1	[more]
tr\|A0A151TB60\|A0A151TB60_CAJCA	3.3e-52	52.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR025724	GAG-pre-integrase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035418.2.1	MELO3C035418.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 78..142 e-value: 3.1E-12 score: 46.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..210
None	No IPR available	PANTHER	PTHR11439:SF234	SUBFAMILY NOT NAMED	coord: 1..210
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 155..205

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035418.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035418.2	Cucumber (Gy14) v1	cgymedB371
MELO3C035418.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035418.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C035418.2	Cucurbita maxima (Rimu)	cmamedB640
MELO3C035418.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035418.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C035418.2	Cucurbita moschata (Rifu)	cmomedB628
MELO3C035418.2	Cucurbita pepo (Zucchini)	cpemedB314
MELO3C035418.2	Cucurbita pepo (Zucchini)	cpemedB561
MELO3C035418.2	Cucurbita pepo (Zucchini)	cpemedB581
MELO3C035418.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035418.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035418.2	Melon (DHL92) v3.6.1	medmedB034
MELO3C035418.2	Bottle gourd (USVL1VR-Ls)	lsimedB064
MELO3C035418.2	Bottle gourd (USVL1VR-Ls)	lsimedB183
MELO3C035418.2	Watermelon (Charleston Gray)	medwcgB140
MELO3C035418.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C035418.2	Watermelon (97103) v1	medwmB143
MELO3C035418.2	Watermelon (97103) v1	medwmB174
MELO3C035418.2	Silver-seed gourd	carmedB0451
MELO3C035418.2	Silver-seed gourd	carmedB0734
MELO3C035418.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035418.2	Watermelon (97103) v2	medwmbB142
MELO3C035418.2	Watermelon (97103) v2	medwmbB140
MELO3C035418.2	Wax gourd	medwgoB156
MELO3C035418.2	Wax gourd	medwgoB169