MELO3C035416.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035416.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Envelope-like protein
Location	chr12 : 12035356 .. 12035777 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCACTAGAGTTAAAGTGAATATTGGTGAATTCATCTTCAATCACTTGATGCATCATGTTGATACATTTGCGATTCACATTCCTATTTGCTTTCCAAGAATTTTGAATGGATTTATTTTAGCTCAACAACCAACTATACTGTCCCCAGTTGATACTGTGGGTCCGACTCCATGAGTTATTCCATTAAGTATGCGACTGTTTCAAGGCTCCCACATATCTGATGTTACTGCTACTTTCGCCAATGCACCTGGAGGAACCAGTGCTGCTGCTGCTACAAATCCAACTATTGGTTAACCTCTGCTACTATCTGTTCTGCTGGCCAATCGTCTCCTGCATGCTTTAATGGCTGAATCCCGATCGCTCACTCGCCAAATCAGTGAACTATCTGATCGGCGCACTGTGTTGGATGTGATTCTATAA

mRNA sequence

TGGGCACTAGAGTTAAAGTGAATATTGGTGAATTCATCTTCAATCACTTGATGCATCATGTTGATACATTTGCGATTCACATTCCTATTTGCTTTCCAAGAATTTTGAATGGATTTATTTTAGCTCAACAACCAACTATACTGTCCCCAGTTGATACTGTGGGTCCGACTCCATGAGTTATTCCATTAAGTATGCGACTGTTTCAAGGCTCCCACATATCTGATGTTACTGCTACTTTCGCCAATGCACCTGGAGGAACCAGTGCTGCTGCTGCTACAAATCCAACTATTGGTTAACCTCTGCTACTATCTGTTCTGCTGGCCAATCGTCTCCTGCATGCTTTAATGGCTGAATCCCGATCGCTCACTCGCCAAATCAGTGAACTATCTGATCGGCGCACTGTGTTGGATGTGATTCTATAA

Coding sequence (CDS)

ATGCATCATGTTGATACATTTGCGATTCACATTCCTATTTGCTTTCCAAGAATTTTGAATGGATTTATTTTAGCTCAACAACCAACTATACTGTCCCCAGTTGATACTGTGGGTCCGACTCCATGA

Protein sequence

MHHVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP

Homology

[Close]

BLAST of MELO3C035416.2 vs. NCBI nr
Match: XP_008445797.1 (PREDICTED: uncharacterized protein LOC103488721 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-09
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MHHVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           + HV+TFAIHIPICFP IL+GF+LAQQ TIL+P+DTVG +P
Sbjct: 129 LQHVNTFAIHIPICFPLILSGFLLAQQSTILTPLDTVGTSP 169

[Close]

BLAST of MELO3C035416.2 vs. NCBI nr
Match: XP_008452370.1 (PREDICTED: uncharacterized protein LOC103493432 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 7.6e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1   MHHVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           + HVDTF IHIPICFP+IL+GF+LAQQ TIL+P++TVG  P
Sbjct: 134 LRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAP 174

[Close]

BLAST of MELO3C035416.2 vs. NCBI nr
Match: XP_008442296.1 (PREDICTED: uncharacterized protein LOC103486210 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 3   HVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           HVDTFAIHIPICF +IL+GF+LAQQ TIL+P+DTVG  P
Sbjct: 308 HVDTFAIHIPICFLQILSGFLLAQQSTILTPLDTVGSAP 346

[Close]

BLAST of MELO3C035416.2 vs. NCBI nr
Match: XP_016901851.1 (PREDICTED: uncharacterized protein LOC107991438 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MHHVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           + HVDTFAIHI ICFPRIL+GFILAQQ TIL+ +D VG  P
Sbjct: 379 LRHVDTFAIHILICFPRILSGFILAQQSTILTSLDIVGSAP 419

[Close]

BLAST of MELO3C035416.2 vs. TrEMBL
Match: tr|A0A1S3BD19|A0A1S3BD19_CUCME (uncharacterized protein LOC103488721 OS=Cucumis melo OX=3656 GN=LOC103488721 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-09
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MHHVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           + HV+TFAIHIPICFP IL+GF+LAQQ TIL+P+DTVG +P
Sbjct: 129 LQHVNTFAIHIPICFPLILSGFLLAQQSTILTPLDTVGTSP 169

[Close]

BLAST of MELO3C035416.2 vs. TrEMBL
Match: tr|A0A1S3BUG4|A0A1S3BUG4_CUCME (uncharacterized protein LOC103493432 OS=Cucumis melo OX=3656 GN=LOC103493432 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1   MHHVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           + HVDTF IHIPICFP+IL+GF+LAQQ TIL+P++TVG  P
Sbjct: 134 LRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAP 174

[Close]

BLAST of MELO3C035416.2 vs. TrEMBL
Match: tr|A0A1S3B4W4|A0A1S3B4W4_CUCME (uncharacterized protein LOC103486210 OS=Cucumis melo OX=3656 GN=LOC103486210 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 3   HVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           HVDTFAIHIPICF +IL+GF+LAQQ TIL+P+DTVG  P
Sbjct: 308 HVDTFAIHIPICFLQILSGFLLAQQSTILTPLDTVGSAP 346

[Close]

BLAST of MELO3C035416.2 vs. TrEMBL
Match: tr|A0A1S4E0U5|A0A1S4E0U5_CUCME (uncharacterized protein LOC107991438 OS=Cucumis melo OX=3656 GN=LOC107991438 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MHHVDTFAIHIPICFPRILNGFILAQQPTILSPVDTVGPTP 42
           + HVDTFAIHI ICFPRIL+GFILAQQ TIL+ +D VG  P
Sbjct: 379 LRHVDTFAIHILICFPRILSGFILAQQSTILTSLDIVGSAP 419

The following BLAST results are available for this feature:

BLAST of MELO3C035416.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445797.1	4.4e-09	73.17	PREDICTED: uncharacterized protein LOC103488721 [Cucumis melo]	[more]
XP_008452370.1	7.6e-09	70.73	PREDICTED: uncharacterized protein LOC103493432 [Cucumis melo]	[more]
XP_008442296.1	1.7e-08	76.92	PREDICTED: uncharacterized protein LOC103486210 [Cucumis melo]	[more]
XP_016901851.1	8.4e-08	73.17	PREDICTED: uncharacterized protein LOC107991438 [Cucumis melo]	[more]

BLAST of MELO3C035416.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035416.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035416.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BD19\|A0A1S3BD19_CUCME	2.9e-09	73.17	uncharacterized protein LOC103488721 OS=Cucumis melo OX=3656 GN=LOC103488721 PE=...	[more]
tr\|A0A1S3BUG4\|A0A1S3BUG4_CUCME	5.0e-09	70.73	uncharacterized protein LOC103493432 OS=Cucumis melo OX=3656 GN=LOC103493432 PE=...	[more]
tr\|A0A1S3B4W4\|A0A1S3B4W4_CUCME	1.1e-08	76.92	uncharacterized protein LOC103486210 OS=Cucumis melo OX=3656 GN=LOC103486210 PE=...	[more]
tr\|A0A1S4E0U5\|A0A1S4E0U5_CUCME	5.5e-08	73.17	uncharacterized protein LOC107991438 OS=Cucumis melo OX=3656 GN=LOC107991438 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035416.2.1	MELO3C035416.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035416.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035416.2	Cucumber (Gy14) v1	cgymedB528
MELO3C035416.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C035416.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C035416.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C035416.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035416.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035416.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035416.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035416.2	Watermelon (97103) v1	medwmB167
MELO3C035416.2	Silver-seed gourd	carmedB0000
MELO3C035416.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035416.2	Watermelon (97103) v2	medwmbB132
MELO3C035416.2	Wax gourd	medwgoB176