MELO3C035413.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035413.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionSuccinate dehydrogenase subunit 4
Locationchr12 : 11877158 .. 11877611 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAAAATTCGATCTTGGTCTATTTGAGATTGTTCTTTTTTTATCTCCATCAAAGATCTTTTCTTAGCTCTCATTGCTTTTTCGAATAAATCGAATAACCTAATGGACTCGTCCTTGCCTACTATGAAAGATATCCATTTTTTCAATTCCATAACTAGGACAGGTTATGAAATAGGAAAACAAAGTAGAGTGACACTCGACTTCTCTCTATCCTAGCCTACTATCCGTCTTGCATATTTGGAGTTCTTCCTCGTCTTCTTCTTTTCATGCCCTAAAATACGAGACAGACTCTCATGTGCAAATGAGGAAGGAAGGAAGCTTTCCCATGGATAAACTCTCTTTATAAAGGATTCAAGAAATACATAACCTTTTCATTACGCCTTGGTTCTTCATGCCACCAACAAGGACTACAAAGGCTACTGCCCTTTCACCTCTCACCTTTATCCTCTC

mRNA sequence

ATGACCCAAAATTCGATCTTGGTCTATTTGAGATTGTTCTTTTTTTATCTCCATCAAAGATCTTTTCTTAGCTCTCATTGCTTTTTCGAATAAATCGAATAACCTAATGGACTCGTCCTTGCCTACTATGAAAGATATCCATTTTTTCAATTCCATAACTAGGACAGGTTATGAAATAGGAAAACAAAGTAGAGTGACACTCGACTTCTCTCTATCCTAGCCTACTATCCGTCTTGCATATTTGGAGTTCTTCCTCGTCTTCTTCTTTTCATGCCCTAAAATACGAGACAGACTCTCATGTGCAAATGAGGAAGGAAGGAAGCTTTCCCATGGATAAACTCTCTTTATAAAGGATTCAAGAAATACATAACCTTTTCATTACGCCTTGGTTCTTCATGCCACCAACAAGGACTACAAAGGCTACTGCCCTTTCACCTCTCACCTTTATCCTCTC

Coding sequence (CDS)

ATGGACTCGTCCTTGCCTACTATGAAAGATATCCATTTTTTCAATTCCATAACTAGGACAGGTTATGAAATAGGAAAACAAAGTAGAGTGACACTCGACTTCTCTCTATCCTAG

Protein sequence

MDSSLPTMKDIHFFNSITRTGYEIGKQSRVTLDFSLS
Homology
[Close]
BLAST of MELO3C035413.2 vs. NCBI nr
Match: AEN56099.1 (succinate dehydrogenase subunit 4 (mitochondrion) [Cucumis melo subsp. melo])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-05
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   MDSSLPTMKDIHFFNSITRTGYEIGKQSRVTLDFSLS 38
           MDSSLP MKDIHF +S TRT YE+GK SRV LDFS S
Sbjct: 127 MDSSLPAMKDIHFSDSSTRTDYEMGKLSRVRLDFSPS 163

[Close]
BLAST of MELO3C035413.2 vs. TrEMBL
Match: tr|G3EU16|G3EU16_CUCME (Succinate dehydrogenase subunit 4 OS=Cucumis melo subsp. melo OX=412675 GN=sdh4 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   MDSSLPTMKDIHFFNSITRTGYEIGKQSRVTLDFSLS 38
           MDSSLP MKDIHF +S TRT YE+GK SRV LDFS S
Sbjct: 127 MDSSLPAMKDIHFSDSSTRTDYEMGKLSRVRLDFSPS 163

The following BLAST results are available for this feature:
BLAST of MELO3C035413.2 vs. NCBI nr
Match NameE-valueIdentityDescription
AEN56099.11.2e-0575.68succinate dehydrogenase subunit 4 (mitochondrion) [Cucumis melo subsp. melo][more]
BLAST of MELO3C035413.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035413.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035413.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|G3EU16|G3EU16_CUCME8.0e-0675.68Succinate dehydrogenase subunit 4 OS=Cucumis melo subsp. melo OX=412675 GN=sdh4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035413.2.1MELO3C035413.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035413.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035413.2Watermelon (97103) v2medwmbB132
MELO3C035413.2Wax gourdmedwgoB176
MELO3C035413.2Cucumber (Gy14) v2cgybmedB009
MELO3C035413.2Cucurbita maxima (Rimu)cmamedB425
MELO3C035413.2Cucurbita moschata (Rifu)cmomedB400
MELO3C035413.2Cucurbita pepo (Zucchini)cpemedB033
MELO3C035413.2Wild cucumber (PI 183967)cpimedB011
MELO3C035413.2Cucumber (Chinese Long) v2cumedB010
MELO3C035413.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035413.2Watermelon (Charleston Gray)medwcgB133
MELO3C035413.2Watermelon (97103) v1medwmB167
MELO3C035413.2Silver-seed gourdcarmedB0000