MELO3C035411.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035411.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein MNN4-like
Location	chr12 : 11286749 .. 11286973 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAGGTGAAACAAAGCTAAGGAAGCGAGAAAAGCTCTTTAGTGAGGTTGAGAAAGTAGCCCTCTTCACGAAGAAAGGCAAAGACAAAGAAAAGATGTTTGATAAGCATTGTGAGGAGTTTGAGAAAGAGATTGAGGAGTTAAGTCCTTTGGAGGACGAGGCGTCAAGGCCTAAAAAAGAGAAAAGTTAAGATGAAGAAGAAGACCTTAAGAGTGTAGTTTGAG

mRNA sequence

ATAAAGGTGAAACAAAGCTAAGGAAGCGAGAAAAGCTCTTTAGTGAGGTTGAGAAAGTAGCCCTCTTCACGAAGAAAGGCAAAGACAAAGAAAAGATGTTTGATAAGCATTGTGAGGAGTTTGAGAAAGAGATTGAGGAGTTAAGTCCTTTGGAGGACGAGGCGTCAAGGCCTAAAAAAGAGAAAAGTTAAGATGAAGAAGAAGACCTTAAGAGTGTAGTTTGAG

Coding sequence (CDS)

AAAGGTGAAACAAAGCTAAGGAAGCGAGAAAAGCTCTTTAGTGAGGTTGAGAAAGTAGCCCTCTTCACGAAGAAAGGCAAAGACAAAGAAAAGATGTTTGATAAGCATTGTGAGGAGTTTGAGAAAGAGATTGAGGAGTTAAGTCCTTTGGAGGACGAGGCGTCAAGGCCTAAAAAAGAGAAAAGTTAA

Protein sequence

KGETKLRKREKLFSEVEKVALFTKKGKDKEKMFDKHCEEFEKEIEELSPLEDEASRPKKEKS

Homology

[Close]

BLAST of MELO3C035411.2 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 7.0e-06
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   KGETKLRKREKLFSEVEKVALFTKKGKDKEKMFDKHCEEFEKEIEELSPLED 53
           K E KLR++E+L ++V+KVAL  +K K+ EK F++HCEEF+KEIEELSPLED
Sbjct: 61  KKEIKLREKEELLNKVDKVALSVEKRKE-EKTFEEHCEEFKKEIEELSPLED 111

[Close]

BLAST of MELO3C035411.2 vs. TrEMBL
Match: tr|A0A1S3CPC6|A0A1S3CPC6_CUCME (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   KGETKLRKREKLFSEVEKVALFTKKGKDKEKMFDKHCEEFEKEIEELSPLED 53
           K E KLR++E+L ++V+KVAL  +K K+ EK F++HCEEF+KEIEELSPLED
Sbjct: 61  KKEIKLREKEELLNKVDKVALSVEKRKE-EKTFEEHCEEFKKEIEELSPLED 111

[Close]

BLAST of MELO3C035411.2 vs. TrEMBL
Match: tr|A0A0A0L7S0|A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 27/53 (50.94%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   KGETKLRKREKLFSEVEKVALFTKKGKDKEKMFDKHCEEFEKEIEELSPLEDE 54
           K E +L+++E+L ++V+KV LF KKGK K    ++ CEE EK++E+LSP+EDE
Sbjct: 57  KKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDE 109

The following BLAST results are available for this feature:

BLAST of MELO3C035411.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465464.1	7.0e-06	63.46	PREDICTED: protein MNN4-like [Cucumis melo]	[more]

BLAST of MELO3C035411.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035411.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035411.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPC6\|A0A1S3CPC6_CUCME	4.6e-06	63.46	protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1	[more]
tr\|A0A0A0L7S0\|A0A0A0L7S0_CUCSA	7.3e-04	50.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035411.2.1	MELO3C035411.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035411.2	Wax gourd	medwgoB176
MELO3C035411.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035411.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035411.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035411.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035411.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035411.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035411.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035411.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035411.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035411.2	Watermelon (97103) v2	medwmbB132