MELO3C035406.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035406.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	60S ribosomal protein L5
Location	chr12 : 10561059 .. 10562139 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTGACAACGTGAAGGTATCAGTAGACATGGTTACCGATGGTAATTGCTTCGTTCCTGTTCCAACAAGGGAATGTAGGACTATGCTTTCCCAAGAAGTTGGTTCACAATTGTTATGGCCTCGTCATTTAGTCATTCCTCTAGACAAGAAGGTAATGTGTTTTTCACAAAGGATTTGGTTTAAATATATTTCATATGGATGAGATTTTATGTTTGTGGCAGATGAAAAGCGTGTACCAAGCTGATCCGCAATTATCGTCATTGACACTGAATACAAAGAGAGCACCAGTTACACTATGATTATTGCTATGGGAACTGGATTATATTGGGTCAAAAATTCAAATTCACGTACCTGCTAAAGTTTTTGGGTATGAACAAAAATGTTGCATATTCCTCGAGACACTCCAAGAATTTTGTCAAATGCAGCCTATATCAACCCAATGGATTGATGCATTCATGTTGTAAGTTACCTCTTTTGTACATCAATTACATAGTATAATAATGTGTACCACGCAGTAAAGTCGAGTATGCTGTTCATATTTGTAGTCACCTTTACAAAGTGATGGAAGAGAATGGAACATTGGGATCCTACAAGTTTGCAGACGCTGGCTCTGTTTCAGTTGGTATAAGTAAAGAAGATCGAGCATAGATCCTGAATGCTAGATTGTTTGGGACCGACCATCGTCAGATTTTGATGTTTCCATACAATTCAGGGTATGTGCAAAACTTTTTTCAGCTAATGCACCTAATGAACTATATGACCTTCATTCTAAGTTTAACTCACATTTACCTATCAATATAGAAACCATTGGTGTCTAATAGCCATCGATTTTTCAAGAGGCACTGCATATTGGATGGATCCTTTGAGAAACCGAATTAACAATGATGCCTCTGATGTCGTCCGGATGTATGTTGGAACTTTTATTTATGATAAAACAATAATGGGTTAATATGTTGCATATGAGACAATGATTGTATAACTTACGTAGTTTGATATGCATTCTTAGGGCTTTCGACATTTCGAACAAGAAGAAGCTTGTTTAGAGGACAATCAAGGTATGAGGAGTGGGGATTTAG

mRNA sequence

ATGGACGGTGACAACGTGAAGGTATCAGTAGACATGGTTACCGATGGTAATTGCTTCGTTCCTGTTCCAACAAGGGAATGTAGGACTATGCTTTCCCAAGAAGTTGGTTCACAATTGTTATGGCCTCGTCATTTAGTCATTCCTCTAGACAAGAAGATGAAAAGCGTGTACCAAGCTGATCCGCAATTATCGTCATTGACACTGAATACAAAGAGAGCACCAGTTACACTATGATTATTGCTATGGGAACTGGATTATATTGGGTCAAAAATTCAAATTCACGTACCTGCTAAAGTTTTTGGTCACCTTTACAAAGTGATGGAAGAGAATGGAACATTGGGATCCTACAAGTTTGCAGACGCTGGCTCTGTTTCAGTTGGTATAAGTAAAGAAGATCGAGCATAGATCCTGAATGCTAGATTGTTTGGGACCGACCATCGTCAGATTTTGATGTTTCCATACAATTCAGGGGCTTTCGACATTTCGAACAAGAAGAAGCTTGTTTAGAGGACAATCAAGGTATGAGGAGTGGGGATTTAG

Coding sequence (CDS)

ATGGACGGTGACAACGTGAAGGTATCAGTAGACATGGTTACCGATGGTAATTGCTTCGTTCCTGTTCCAACAAGGGAATGTAGGACTATGCTTTCCCAAGAAGTTGGTTCACAATTGTTATGGCCTCGTCATTTAGTCATTCCTCTAGACAAGAAGATGAAAAGCGTGTACCAAGCTGATCCGCAATTATCGTCATTGACACTGAATACAAAGAGAGCACCAGTTACACTATGA

Protein sequence

MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQADPQLSSLTLNTKRAPVTL

Homology

[Close]

BLAST of MELO3C035406.2 vs. NCBI nr
Match: XP_016903672.1 (PREDICTED: uncharacterized protein LOC107992324, partial [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 4.9e-33
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQAD 60
          MDGDNVKVSVDMVTDGNCFVPVPTRE RTMLSQEVGSQLLWPRHLVIPLD+KMKSVYQAD
Sbjct: 1  MDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSQEVGSQLLWPRHLVIPLDEKMKSVYQAD 60

Query: 61 PQLSSLTLNTKRAPVTL 78
          P+L SLTLNTKRAPVTL
Sbjct: 61 PRLPSLTLNTKRAPVTL 77

[Close]

BLAST of MELO3C035406.2 vs. NCBI nr
Match: KGN49682.1 (hypothetical protein Csa_5G065650 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMK---SVY 60
          MDGDNV + VD+V DG+C VP+PTR+  TML QE+ SQLLWPRHLVIP D+K +      
Sbjct: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60

Query: 61 QADPQLSS 66
          QAD +  S
Sbjct: 61 QADERAPS 68

[Close]

BLAST of MELO3C035406.2 vs. NCBI nr
Match: XP_016902601.1 (PREDICTED: uncharacterized protein LOC107991760 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 42/77 (54.55%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1   MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQAD 60
           +DGDNVKVSVDMVTD                              VIPLD+KMK+VYQAD
Sbjct: 125 IDGDNVKVSVDMVTD------------------------------VIPLDEKMKNVYQAD 171

Query: 61  PQLSSLTLNTKRAPVTL 78
           P+L SLTLNTKRAPVTL
Sbjct: 185 PRLPSLTLNTKRAPVTL 171

[Close]

BLAST of MELO3C035406.2 vs. NCBI nr
Match: XP_011657178.1 (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 2  DGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSV-YQAD 61
          DG+N+KVSVD+V DG   +P PT+E  T L+ E+GS L+WPRHLV+  + K ++V +  D
Sbjct: 22 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKKETVGFNTD 81

Query: 62 PQLSSL 67
          P   S+
Sbjct: 82 PSTFSM 87

[Close]

BLAST of MELO3C035406.2 vs. NCBI nr
Match: XP_011657179.1 (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-09
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 2  DGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQADP 61
          DG+N+KVSVD+V DG   +P PT+E  T L+ E+GS L+WPRHLV+  + K    +  DP
Sbjct: 22 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKETVGFNTDP 81

Query: 62 QLSSL 67
             S+
Sbjct: 82 STFSM 86

[Close]

BLAST of MELO3C035406.2 vs. TrEMBL
Match: tr|A0A1S4E627|A0A1S4E627_CUCME (uncharacterized protein LOC107992324 OS=Cucumis melo OX=3656 GN=LOC107992324 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-33
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQAD 60
          MDGDNVKVSVDMVTDGNCFVPVPTRE RTMLSQEVGSQLLWPRHLVIPLD+KMKSVYQAD
Sbjct: 1  MDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSQEVGSQLLWPRHLVIPLDEKMKSVYQAD 60

Query: 61 PQLSSLTLNTKRAPVTL 78
          P+L SLTLNTKRAPVTL
Sbjct: 61 PRLPSLTLNTKRAPVTL 77

[Close]

BLAST of MELO3C035406.2 vs. TrEMBL
Match: tr|A0A0A0KMP7|A0A0A0KMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G065650 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-13
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMK---SVY 60
          MDGDNV + VD+V DG+C VP+PTR+  TML QE+ SQLLWPRHLVIP D+K +      
Sbjct: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60

Query: 61 QADPQLSS 66
          QAD +  S
Sbjct: 61 QADERAPS 68

[Close]

BLAST of MELO3C035406.2 vs. TrEMBL
Match: tr|A0A1S4E2Z4|A0A1S4E2Z4_CUCME (uncharacterized protein LOC107991760 OS=Cucumis melo OX=3656 GN=LOC107991760 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-09
Identity = 42/77 (54.55%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1   MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQAD 60
           +DGDNVKVSVDMVTD                              VIPLD+KMK+VYQAD
Sbjct: 125 IDGDNVKVSVDMVTD------------------------------VIPLDEKMKNVYQAD 171

Query: 61  PQLSSLTLNTKRAPVTL 78
           P+L SLTLNTKRAPVTL
Sbjct: 185 PRLPSLTLNTKRAPVTL 171

[Close]

BLAST of MELO3C035406.2 vs. TrEMBL
Match: tr|A0A1S4DU79|A0A1S4DU79_CUCME (uncharacterized protein LOC103486165 OS=Cucumis melo OX=3656 GN=LOC103486165 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.5e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1   MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGS 38
           +DGDN+KVSVDMV DGNCF+PVPTRE  TMLSQEVGS
Sbjct: 110 IDGDNMKVSVDMVVDGNCFIPVPTREGMTMLSQEVGS 146

[Close]

BLAST of MELO3C035406.2 vs. TrEMBL
Match: tr|A0A0A0KCE4|A0A0A0KCE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G211850 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 2   DGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSV 57
           DG+N+KVSVD+V DG   +P PT+E  T L+ E+GS L+WPRHLV+  + K  SV
Sbjct: 129 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKSYSV 183

The following BLAST results are available for this feature:

BLAST of MELO3C035406.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903672.1	4.9e-33	94.81	PREDICTED: uncharacterized protein LOC107992324, partial [Cucumis melo]	[more]
KGN49682.1	1.2e-12	58.82	hypothetical protein Csa_5G065650 [Cucumis sativus]	[more]
XP_016902601.1	4.9e-09	54.55	PREDICTED: uncharacterized protein LOC107991760 [Cucumis melo]	[more]
XP_011657178.1	6.4e-09	48.48	PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus]	[more]
XP_011657179.1	8.3e-09	47.69	PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus]	[more]

BLAST of MELO3C035406.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035406.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035406.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E627\|A0A1S4E627_CUCME	3.2e-33	94.81	uncharacterized protein LOC107992324 OS=Cucumis melo OX=3656 GN=LOC107992324 PE=...	[more]
tr\|A0A0A0KMP7\|A0A0A0KMP7_CUCSA	8.2e-13	58.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G065650 PE=4 SV=1	[more]
tr\|A0A1S4E2Z4\|A0A1S4E2Z4_CUCME	3.2e-09	54.55	uncharacterized protein LOC107991760 OS=Cucumis melo OX=3656 GN=LOC107991760 PE=...	[more]
tr\|A0A1S4DU79\|A0A1S4DU79_CUCME	5.5e-09	83.78	uncharacterized protein LOC103486165 OS=Cucumis melo OX=3656 GN=LOC103486165 PE=...	[more]
tr\|A0A0A0KCE4\|A0A0A0KCE4_CUCSA	2.7e-08	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G211850 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035406.2.1	MELO3C035406.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035406.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035406.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035406.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035406.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035406.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C035406.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035406.2	Cucurbita pepo (Zucchini)	cpemedB557
MELO3C035406.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035406.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035406.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035406.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035406.2	Watermelon (97103) v1	medwmB155
MELO3C035406.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035406.2	Watermelon (97103) v2	medwmbB132
MELO3C035406.2	Wax gourd	medwgoB176