MELO3C035404.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C035404.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLipoyl synthase
Locationchr12 : 10316113 .. 10316560 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCATCTACTTGTTTTATCGATGCATGTAACTAATTTTTAATAATATTGAATTGTTGTTCTGTATTGTCTTTTAGTGTGGATTACATCATCTTAACAAGTGTAGACCGTGATGATATTCATAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAAAGCAATGAAGGTTGAATAGATTTTTATACAATAATTTTTGTCTCCTTATTGATAAACTGAATTGTTGAAGGTTTCTTGGAAAAGTTACTAGAAGTCTAATTAGTCTTAGTGAATTTATTACGTAGGAACTTAAGCCTGAGATAATGGTTGAATGCTTAACTTTTGATTTCCGAGGTAACTTAAAGGCTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTGCTCACAATATTGAGACTGTGAAACGACTTTAAAGAATTGTTAGAGATCCTTGAGCTGGGTAA

mRNA sequence

ATGTTCTCATCTACTTGTTTTATCGATGCATTGTGGATTACATCATCTTAACAAGTGTAGACCGTGATGATATTCATAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAAAGCAATGAAGGAACTTAAGCCTGAGATAATGGTTGAATGCTTAACTTTTGATTTCCGAGGTAACTTAAAGGCTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTGCTCACAATATTGAGACTGTGAAACGACTTTAAAGAATTGTTAGAGATCCTTGAGCTGGGTAA

Coding sequence (CDS)

GTTCTCATCTACTTGTTTTATCGATGCATTGTGGATTACATCATCTTAACAAGTGTAGACCGTGATGATATTCATAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAAAGCAATGAAGGAACTTAAGCCTGAGATAATGGTTGAATGCTTAACTTTTGATTTCCGAGGTAACTTAAAGGCTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTGCTCACAATATTGAGACTGTGAAACGACTTTAA

Protein sequence

VLIYLFYRCIVDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
BLAST of MELO3C035404.2 vs. NCBI nr
Match: XP_008445908.1 (PREDICTED: lipoyl synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-30
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 196 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGL 255

Query: 71  DVFAHNIETVKRL 84
           DVFAHNIETVKRL
Sbjct: 256 DVFAHNIETVKRL 268

BLAST of MELO3C035404.2 vs. NCBI nr
Match: XP_004147097.1 (PREDICTED: lipoyl synthase, chloroplastic [Cucumis sativus] >KGN51575.1 hypothetical protein Csa_5G579610 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 196 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGL 255

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 256 DVFAHNVETVKRL 268

BLAST of MELO3C035404.2 vs. NCBI nr
Match: XP_022945153.1 (lipoyl synthase, chloroplastic [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 201 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGL 260

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 261 DVFAHNVETVKRL 273

BLAST of MELO3C035404.2 vs. NCBI nr
Match: XP_022966979.1 (lipoyl synthase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 198 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGL 257

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 258 DVFAHNVETVKRL 270

BLAST of MELO3C035404.2 vs. NCBI nr
Match: XP_023541459.1 (lipoyl synthase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 198 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGL 257

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 258 DVFAHNVETVKRL 270

BLAST of MELO3C035404.2 vs. TAIR10
Match: AT5G08415.1 (Radical SAM superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 3.5e-31
Identity = 60/73 (82.19%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI++TSVDRDDI +GGSGHFAQTVKAMK  KP+IM+ECLT DFRG+L+AV+TLVHSGL
Sbjct: 193 VDYIVITSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDLEAVDTLVHSGL 252

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 253 DVFAHNVETVKRL 265

BLAST of MELO3C035404.2 vs. TAIR10
Match: AT2G20860.1 (lipoic acid synthase 1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-20
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDY+++TSVDRDD+ + GSGHFA+TV+ +K LKPE+++E L  DFRG+   VE +  SGL
Sbjct: 169 VDYVVITSVDRDDLPDQGSGHFAETVQRLKFLKPEMLIEALVPDFRGDGGCVEKVSKSGL 228

Query: 71  DVFAHNIETVKRL 84
           DV AHNIETV+ L
Sbjct: 229 DVLAHNIETVEEL 241

BLAST of MELO3C035404.2 vs. Swiss-Prot
Match: sp|B9N2B0|LISC2_POPTR (Lipoyl synthase 2, chloroplastic OS=Populus trichocarpa OX=3694 GN=LIP1P-2 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.8e-32
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI++TSVDRDD+ +GGSGHFAQTV+AMKELKPEIMVECLT DFRG+LKAV+TLVHSGL
Sbjct: 194 VDYIVITSVDRDDLSDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSGL 253

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 254 DVFAHNVETVKRL 266

BLAST of MELO3C035404.2 vs. Swiss-Prot
Match: sp|B9I666|LISC1_POPTR (Lipoyl synthase 1, chloroplastic OS=Populus trichocarpa OX=3694 GN=LIP1P-1 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-31
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI++TSVDRDD+ +GGSGHFAQTV+AMKELKPEIMVECLT DFRG+LKAV+TLVHSGL
Sbjct: 173 VDYIVITSVDRDDLPDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSGL 232

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 233 DVFAHNVETVKRL 245

BLAST of MELO3C035404.2 vs. Swiss-Prot
Match: sp|B9RX57|LISC_RICCO (Lipoyl synthase, chloroplastic OS=Ricinus communis OX=3988 GN=LIP1P PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-30
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDD+ +GGSGHF++TV+AMK+LKPEIMVECLT DFRG+L+AVETLVHSGL
Sbjct: 161 VDYIVLTSVDRDDLPDGGSGHFSETVQAMKKLKPEIMVECLTSDFRGDLEAVETLVHSGL 220

Query: 71  DVFAHNIETVKRL 84
           DVFAHNIETVKRL
Sbjct: 221 DVFAHNIETVKRL 233

BLAST of MELO3C035404.2 vs. Swiss-Prot
Match: sp|Q8LEE8|LISC_ARATH (Lipoyl synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIP1P PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 6.3e-30
Identity = 60/73 (82.19%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI++TSVDRDDI +GGSGHFAQTVKAMK  KP+IM+ECLT DFRG+L+AV+TLVHSGL
Sbjct: 193 VDYIVITSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDLEAVDTLVHSGL 252

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 253 DVFAHNVETVKRL 265

BLAST of MELO3C035404.2 vs. Swiss-Prot
Match: sp|B8B016|LISC2_ORYSI (Lipoyl synthase 2, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=LIP1P-2 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-27
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDY++LTSVDRDD+ +GGSGHFAQTVKA+KELKP I+VECLT DFRG+L+AV +L  SGL
Sbjct: 180 VDYVVLTSVDRDDLPDGGSGHFAQTVKALKELKPGILVECLTSDFRGDLEAVSSLASSGL 239

Query: 71  DVFAHNIETVKRL 84
           DVFAHNIETV+ L
Sbjct: 240 DVFAHNIETVRSL 252

BLAST of MELO3C035404.2 vs. TrEMBL
Match: tr|A0A1S3BDA7|A0A1S3BDA7_CUCME (Lipoyl synthase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488790 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 196 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGL 255

Query: 71  DVFAHNIETVKRL 84
           DVFAHNIETVKRL
Sbjct: 256 DVFAHNIETVKRL 268

BLAST of MELO3C035404.2 vs. TrEMBL
Match: tr|A0A0A0KPN0|A0A0A0KPN0_CUCSA (Lipoyl synthase, chloroplastic OS=Cucumis sativus OX=3659 GN=LIP1P PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-30
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 196 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSGL 255

Query: 71  DVFAHNIETVKRL 84
           DVFAHN+ETVKRL
Sbjct: 256 DVFAHNVETVKRL 268

BLAST of MELO3C035404.2 vs. TrEMBL
Match: tr|A0A151TQ25|A0A151TQ25_CAJCA (Lipoyl synthase, chloroplastic OS=Cajanus cajan OX=3821 GN=LIP1P PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-30
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDDI +GGSGHFAQTVKAMK LKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 158 VDYIVLTSVDRDDIPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSGL 217

Query: 71  DVFAHNIETVKRL 84
           DVFAHNIETVKRL
Sbjct: 218 DVFAHNIETVKRL 230

BLAST of MELO3C035404.2 vs. TrEMBL
Match: tr|A0A2I4EGG5|A0A2I4EGG5_9ROSI (Lipoyl synthase, chloroplastic OS=Juglans regia OX=51240 GN=LOC108989379 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.1e-30
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDD+ +GGSGHFAQTVKAMK+LKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 189 VDYIVLTSVDRDDLPDGGSGHFAQTVKAMKKLKPEIMVECLTSDFRGDLKAVETLVHSGL 248

Query: 71  DVFAHNIETVKRL 84
           DVFAHNIETVKRL
Sbjct: 249 DVFAHNIETVKRL 261

BLAST of MELO3C035404.2 vs. TrEMBL
Match: tr|A0A2I4H8D0|A0A2I4H8D0_9ROSI (Lipoyl synthase, chloroplastic OS=Juglans regia OX=51240 GN=LOC109014391 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.1e-30
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 11  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGL 70
           VDYI+LTSVDRDD+ +GGSGHFAQTVKAMK+LKPEIMVECLT DFRG+LKAVETLVHSGL
Sbjct: 190 VDYIVLTSVDRDDLPDGGSGHFAQTVKAMKKLKPEIMVECLTSDFRGDLKAVETLVHSGL 249

Query: 71  DVFAHNIETVKRL 84
           DVFAHNIETVKRL
Sbjct: 250 DVFAHNIETVKRL 262

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008445908.11.9e-3093.15PREDICTED: lipoyl synthase, chloroplastic [Cucumis melo][more]
XP_004147097.12.4e-3091.78PREDICTED: lipoyl synthase, chloroplastic [Cucumis sativus] >KGN51575.1 hypothet... [more]
XP_022945153.12.4e-3091.78lipoyl synthase, chloroplastic [Cucurbita moschata][more]
XP_022966979.12.4e-3091.78lipoyl synthase, chloroplastic [Cucurbita maxima][more]
XP_023541459.12.4e-3091.78lipoyl synthase, chloroplastic [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G08415.13.5e-3182.19Radical SAM superfamily protein[more]
AT2G20860.11.2e-2060.27lipoic acid synthase 1[more]
Match NameE-valueIdentityDescription
sp|B9N2B0|LISC2_POPTR8.8e-3286.30Lipoyl synthase 2, chloroplastic OS=Populus trichocarpa OX=3694 GN=LIP1P-2 PE=3 ... [more]
sp|B9I666|LISC1_POPTR1.1e-3186.30Lipoyl synthase 1, chloroplastic OS=Populus trichocarpa OX=3694 GN=LIP1P-1 PE=3 ... [more]
sp|B9RX57|LISC_RICCO1.3e-3084.93Lipoyl synthase, chloroplastic OS=Ricinus communis OX=3988 GN=LIP1P PE=3 SV=1[more]
sp|Q8LEE8|LISC_ARATH6.3e-3082.19Lipoyl synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIP1P PE=1 SV=... [more]
sp|B8B016|LISC2_ORYSI5.0e-2776.71Lipoyl synthase 2, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=LIP1P... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BDA7|A0A1S3BDA7_CUCME1.2e-3093.15Lipoyl synthase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488790 PE=3 SV=1[more]
tr|A0A0A0KPN0|A0A0A0KPN0_CUCSA1.6e-3091.78Lipoyl synthase, chloroplastic OS=Cucumis sativus OX=3659 GN=LIP1P PE=3 SV=1[more]
tr|A0A151TQ25|A0A151TQ25_CAJCA4.7e-3091.78Lipoyl synthase, chloroplastic OS=Cajanus cajan OX=3821 GN=LIP1P PE=3 SV=1[more]
tr|A0A2I4EGG5|A0A2I4EGG5_9ROSI6.1e-3090.41Lipoyl synthase, chloroplastic OS=Juglans regia OX=51240 GN=LOC108989379 PE=3 SV... [more]
tr|A0A2I4H8D0|A0A2I4H8D0_9ROSI6.1e-3090.41Lipoyl synthase, chloroplastic OS=Juglans regia OX=51240 GN=LOC109014391 PE=3 SV... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0009249 protein lipoylation
cellular_component GO:0009507 chloroplast
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0016783 sulfurtransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035404.2.1MELO3C035404.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10949LIPOYL SYNTHASEcoord: 11..83
NoneNo IPR availablePANTHERPTHR10949:SF0LIPOYL SYNTHASE, MITOCHONDRIALcoord: 11..83
NoneNo IPR availableSUPERFAMILYSSF102114Radical SAM enzymescoord: 11..82

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None