MELO3C035396.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035396.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	MADS-box protein SOC1-like
Location	chr12 : 9991966 .. 9992115 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAGATAGCGAAGAAAAGGATCGAGATAGAGACGGAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCTAAAGAGGAAAGAGGGTGGTGA

mRNA sequence

ATTGAGATAGCGAAGAAAAGGATCGAGATAGAGACGGAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCTAAAGAGGAAAGAGGGTGGTGA

Coding sequence (CDS)

ATTGAGATAGCGAAGAAAAGGATCGAGATAGAGACGGAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCTAAAGAGGAAAGAGGGTGGTGA

Protein sequence

IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPKEERGW

Homology

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BLAST of MELO3C035396.2 vs. NCBI nr
Match: XP_008460878.1 (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPKEE 47
           IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDP+EE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

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BLAST of MELO3C035396.2 vs. NCBI nr
Match: XP_011650173.1 (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] >KGN62209.1 hypothetical protein Csa_2G336070 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   IEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPKEE 47
           IEIAKKRIEI TE  YNVEEGTSVESS QTLNANMK KQVMGFD +EE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

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BLAST of MELO3C035396.2 vs. TrEMBL
Match: tr|A0A1S3CDG6|A0A1S3CDG6_CUCME (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPKEE 47
           IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDP+EE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

[Close]

BLAST of MELO3C035396.2 vs. TrEMBL
Match: tr|A0A0A0LME6|A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   IEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPKEE 47
           IEIAKKRIEI TE  YNVEEGTSVESS QTLNANMK KQVMGFD +EE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

The following BLAST results are available for this feature:

BLAST of MELO3C035396.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460878.1	7.7e-16	97.83	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
XP_011650173.1	1.2e-08	85.42	PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] >KGN62209.1 ...	[more]

BLAST of MELO3C035396.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035396.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035396.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDG6\|A0A1S3CDG6_CUCME	5.1e-16	97.83	MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1	[more]
tr\|A0A0A0LME6\|A0A0A0LME6_CUCSA	7.8e-09	85.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000987	core promoter proximal region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035396.2.1	MELO3C035396.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035396.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035396.2	Cucurbita pepo (Zucchini)	cpemedB881
MELO3C035396.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035396.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035396.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035396.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C035396.2	Watermelon (97103) v1	medwmB157
MELO3C035396.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035396.2	Watermelon (97103) v2	medwmbB132
MELO3C035396.2	Wax gourd	medwgoB176
MELO3C035396.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035396.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035396.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035396.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035396.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C035396.2	Cucurbita moschata (Rifu)	cmomedB203