MELO3C035380.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035380.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Homogentisate phytyltransferase 2
Location	chr12 : 8707484 .. 8708270 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGTTGGTTATTCTGCAGTTATGGTAGCCTCTGTAGTTTGGAGGGGTATGTAGAATGCGAAGATATTTTCAAGTATTTTGTTGTAAATAATTAGGTTGTGTTGACTATCCTGCAATTAAGCCTCTATAGTTTGAAGTTAGTTATTGAAAAATAGTGAAAATTCAGGGGAGTAAGTTATGGATGTGAGAGAGTGAGAGACATATGTTTCTAATCAAACCTATTTATGTTTTAGGGACTTAAACGATGGATAAGGGTTGGATGAAACTTAGAAATAAGTTATCCCTTGAGTATAGACATGGAGTGACCCAATTTTTAGAATTTGTCAAATTTCACGTTGATGCTTACGGACGATTGAGGTGTCCATGCAAGAGATGTTTGAATTTAAATTGAAGCTCATTAGAGGGTGTGGAACGACATCTGCTGACTATTGGAATATGCCCCTACTACACAGAATGGGTGTATCATGGAGAGTCATTAAGCTATAGAGGTACAAAAAACTTTGAGGAAGGAACTAGTAGTAATCATTTTAATGAAGGAACTAGTAGTACACAATTTAATGAAGAAGGTGATATCTTTGGTATGCTAAATGATTTACAAGCCCTTATTGAACATGAAGAGGAAATAGAGAAATTTCGTTTGGAAGATGAAATGGCGATGAATGTTGGGGTAAATATAGATGAAGATACAACAAATAATATATTTCAGGACTTATTGAATCAAGCACGTAATGAGTTGTACCCTGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTGA

mRNA sequence

GTTGTGTTGGTTATTCTGCAGTTATGGGACTTAAACGATGGATAAGGGTTGGATGAAACTTAGAAATAAGTTATCCCTTGAGTATAGACATGGAGTGACCCAATTTTTAGAATTTGTCAAATTTCACGTTGATGCTTACGGACGATTGAGGTGTCCATGCAAGAGATGTTTGAATTTAAATTGAAGCTCATTAGAGGGTGTGGAACGACATCTGCTGACTATTGGAATATGCCCCTACTACACAGAATGGGTGTATCATGGAGAGTCATTAAGCTATAGAGGTACAAAAAACTTTGAGGAAGGAACTAGTAGTAATCATTTTAATGAAGGAACTAGTAGTACACAATTTAATGAAGAAGGTGATATCTTTGGTATGCTAAATGATTTACAAGCCCTTATTGAACATGAAGAGGAAATAGAGAAATTTCGTTTGGAAGATGAAATGGCGATGAATGTTGGGGTAAATATAGATGAAGATACAACAAATAATATATTTCAGGACTTATTGAATCAAGCACGTAATGAGTTGTACCCTGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTGA

Coding sequence (CDS)

ATGCTAAATGATTTACAAGCCCTTATTGAACATGAAGAGGAAATAGAGAAATTTCGTTTGGAAGATGAAATGGCGATGAATGTTGGGGTAAATATAGATGAAGATACAACAAATAATATATTTCAGGACTTATTGAATCAAGCACGTAATGAGTTGTACCCTGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTG

Protein sequence

MLNDLQALIEHEEEIEKFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL

Homology

[Close]

BLAST of MELO3C035380.2 vs. NCBI nr
Match: XP_008455800.1 (PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 1   MLNDLQALIEHEEEIEKFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFS 60
           +L DLQ  +   E  E F   D     V  ++DE  T+N+F++L+N+ARN LYPGC++FS
Sbjct: 93  LLTDLQGSMIARE--ENFDDGDGFDDEVPEDVDEINTSNVFEELMNEARNPLYPGCTKFS 152

Query: 61  SLNFLVKL 69
           SLNFLVKL
Sbjct: 153 SLNFLVKL 158

[Close]

BLAST of MELO3C035380.2 vs. TrEMBL
Match: tr|A0A1S3C1V3|A0A1S3C1V3_CUCME (uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 1   MLNDLQALIEHEEEIEKFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFS 60
           +L DLQ  +   E  E F   D     V  ++DE  T+N+F++L+N+ARN LYPGC++FS
Sbjct: 93  LLTDLQGSMIARE--ENFDDGDGFDDEVPEDVDEINTSNVFEELMNEARNPLYPGCTKFS 152

Query: 61  SLNFLVKL 69
           SLNFLVKL
Sbjct: 153 SLNFLVKL 158

The following BLAST results are available for this feature:

BLAST of MELO3C035380.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455800.1	4.0e-07	50.00	PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo]	[more]

BLAST of MELO3C035380.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035380.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035380.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1V3\|A0A1S3C1V3_CUCME	2.7e-07	50.00	uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035380.2.1	MELO3C035380.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035380.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035380.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035380.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035380.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035380.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C035380.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035380.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035380.2	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C035380.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035380.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035380.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035380.2	Watermelon (Charleston Gray)	medwcgB127
MELO3C035380.2	Watermelon (97103) v1	medwmB158
MELO3C035380.2	Watermelon (97103) v1	medwmB165
MELO3C035380.2	Silver-seed gourd	carmedB0174
MELO3C035380.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035380.2	Watermelon (97103) v2	medwmbB127
MELO3C035380.2	Wax gourd	medwgoB176