MELO3C035377.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035377.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	RING-type E3 ubiquitin transferase
Location	chr12 : 8484280 .. 8484522 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTGTGGAAGAGGGTGGAATTGTTGCGCTTGTAGAAGCAATTGAAGATGAGTCAGTGAAAGGGAAAGACTTTGCAGTTTTGACACTCTTGTAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTGCTCGTCAACGAAGGTGGAATTTCCCCTTTAGTTGCACTTTCTCATACTGGAATCGTTTGAGCAAAGCATAAG

mRNA sequence

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTGTGGAAGAGGGTGGAATTGTTGCGCTTGTAGAAGCAATTGAAGATGAGTCAGTGAAAGGGAAAGACTTTGCAGTTTTGACACTCTTGTAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTGCTCGTCAACGAAGGTGGAATTTCCCCTTTAGTTGCACTTTCTCATACTGGAATCGTTTGAGCAAAGCATAAG

Coding sequence (CDS)

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTGTGGAAGAGGGTGGAATTGTTGCGCTTGTAGAAGCAATTGAAGATGAGTCAGTGAAAGGGAAAGACTTTGCAGTTTTGACACTCTTGTAA

Protein sequence

MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL

Homology

[Close]

BLAST of MELO3C035377.2 vs. NCBI nr
Match: XP_008467070.1 (PREDICTED: U-box domain-containing protein 3-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-11
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
          MLLSSLAGIQEGKDAIVEEGGI ALVEAIED  VKGK+FAVLTLL
Sbjct: 1  MLLSSLAGIQEGKDAIVEEGGIAALVEAIEDGLVKGKEFAVLTLL 45

[Close]

BLAST of MELO3C035377.2 vs. NCBI nr
Match: KHN40819.1 (U-box domain-containing protein 2 [Glycine soja])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
          ++L+SLAGIQEGKDAIVEEGGI ALVEAIED SVKGK+FAVLTLL
Sbjct: 2  VVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLL 46

[Close]

BLAST of MELO3C035377.2 vs. NCBI nr
Match: XP_008461972.2 (PREDICTED: tetraspanin-8-like [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 7   AGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
           AGIQEGKDAIVEEGGI ALVEAIED SVKGK+FAVLTLL
Sbjct: 156 AGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLL 194

[Close]

BLAST of MELO3C035377.2 vs. NCBI nr
Match: POE71741.1 (u-box domain-containing protein 2 [Quercus suber])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
          ++LSSLAG++EGK+AIVEEGGI  LVEAIED +VKGK+FAV+TLL
Sbjct: 40 VVLSSLAGVEEGKEAIVEEGGIAVLVEAIEDGTVKGKEFAVVTLL 84

[Close]

BLAST of MELO3C035377.2 vs. NCBI nr
Match: KHN42282.1 (U-box domain-containing protein 2 [Glycine soja])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
          ++L+SLAGI+EGK+AIVEEGGI AL+EAIED SVKGK+FAVLTL+
Sbjct: 7  VVLNSLAGIEEGKEAIVEEGGIGALLEAIEDGSVKGKEFAVLTLV 51

[Close]

BLAST of MELO3C035377.2 vs. TAIR10
Match: AT5G67340.1 (ARM repeat superfamily protein)

HSP 1 Score: 41.6 bits (96), Expect = 1.5e-04
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 1   MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
           ++L++LA ++EGK AI EEGGI  LVE +E  S +GK+ A   LL
Sbjct: 608 VVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALL 652

[Close]

BLAST of MELO3C035377.2 vs. TAIR10
Match: AT3G54790.1 (ARM repeat superfamily protein)

HSP 1 Score: 38.9 bits (89), Expect = 9.8e-04
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 2   LLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
           LL++L+ + EG+ AIV EGGI  LVE ++  S +GK+ A   LL
Sbjct: 660 LLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLL 703

[Close]

BLAST of MELO3C035377.2 vs. TrEMBL
Match: tr|A0A1S3CTY9|A0A1S3CTY9_CUCME (U-box domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC103504507 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-11
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
          MLLSSLAGIQEGKDAIVEEGGI ALVEAIED  VKGK+FAVLTLL
Sbjct: 1  MLLSSLAGIQEGKDAIVEEGGIAALVEAIEDGLVKGKEFAVLTLL 45

[Close]

BLAST of MELO3C035377.2 vs. TrEMBL
Match: tr|A0A1S3CFT8|A0A1S3CFT8_CUCME (tetraspanin-8-like OS=Cucumis melo OX=3656 GN=LOC103500450 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 7   AGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
           AGIQEGKDAIVEEGGI ALVEAIED SVKGK+FAVLTLL
Sbjct: 156 AGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLL 194

[Close]

BLAST of MELO3C035377.2 vs. TrEMBL
Match: tr|A0A2P4IT93|A0A2P4IT93_QUESU (U-box domain-containing protein 2 OS=Quercus suber OX=58331 GN=CFP56_31844 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-09
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
          ++LSSLAG++EGK+AIVEEGGI  LVEAIED +VKGK+FAV+TLL
Sbjct: 40 VVLSSLAGVEEGKEAIVEEGGIAVLVEAIEDGTVKGKEFAVVTLL 84

[Close]

BLAST of MELO3C035377.2 vs. TrEMBL
Match: tr|A0A0B2SDD9|A0A0B2SDD9_GLYSO (U-box domain-containing protein 2 OS=Glycine soja OX=3848 GN=glysoja_042030 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
          ++L+SLAGI+EGK+AIVEEGGI AL+EAIED SVKGK+FAVLTL+
Sbjct: 7  VVLNSLAGIEEGKEAIVEEGGIGALLEAIEDGSVKGKEFAVLTLV 51

[Close]

BLAST of MELO3C035377.2 vs. TrEMBL
Match: tr|S8D312|S8D312_9LAMI (Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_00975 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1   MLLSSLAGIQEGKDAIVEEGGIVALVEAIEDESVKGKDFAVLTLL 46
           ++LSSLAGI +G+DAIVEEGGI ALVEAIED + KGK+FAVLTLL
Sbjct: 351 VVLSSLAGIDDGRDAIVEEGGIAALVEAIEDGTDKGKEFAVLTLL 395

The following BLAST results are available for this feature:

BLAST of MELO3C035377.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467070.1	6.8e-11	91.11	PREDICTED: U-box domain-containing protein 3-like [Cucumis melo]	[more]
KHN40819.1	2.0e-10	86.67	U-box domain-containing protein 2 [Glycine soja]	[more]
XP_008461972.2	1.1e-08	92.31	PREDICTED: tetraspanin-8-like [Cucumis melo]	[more]
POE71741.1	1.1e-08	75.56	u-box domain-containing protein 2 [Quercus suber]	[more]
KHN42282.1	1.4e-08	77.78	U-box domain-containing protein 2 [Glycine soja]	[more]

BLAST of MELO3C035377.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67340.1	1.5e-04	51.11	ARM repeat superfamily protein	[more]
AT3G54790.1	9.8e-04	47.73	ARM repeat superfamily protein	[more]

BLAST of MELO3C035377.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035377.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CTY9\|A0A1S3CTY9_CUCME	4.5e-11	91.11	U-box domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC103504507 P...	[more]
tr\|A0A1S3CFT8\|A0A1S3CFT8_CUCME	7.2e-09	92.31	tetraspanin-8-like OS=Cucumis melo OX=3656 GN=LOC103500450 PE=4 SV=1	[more]
tr\|A0A2P4IT93\|A0A2P4IT93_QUESU	7.2e-09	75.56	U-box domain-containing protein 2 OS=Quercus suber OX=58331 GN=CFP56_31844 PE=4 ...	[more]
tr\|A0A0B2SDD9\|A0A0B2SDD9_GLYSO	9.4e-09	77.78	U-box domain-containing protein 2 OS=Glycine soja OX=3848 GN=glysoja_042030 PE=4...	[more]
tr\|S8D312\|S8D312_9LAMI	1.6e-08	77.78	Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_00975 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035377.2.1	MELO3C035377.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315:SF129	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 2..45
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 2..45

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035377.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035377.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035377.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035377.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035377.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035377.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035377.2	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C035377.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035377.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035377.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035377.2	Watermelon (Charleston Gray)	medwcgB127
MELO3C035377.2	Watermelon (97103) v1	medwmB165
MELO3C035377.2	Silver-seed gourd	carmedB0174
MELO3C035377.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035377.2	Watermelon (97103) v2	medwmbB127
MELO3C035377.2	Wax gourd	medwgoB176