MELO3C035366.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035366.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr12 : 8011645 .. 8012897 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCTAAACTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTAAAGGCGGTGATATATAGATGTGGAGATTTTCACAGTGTGCCTTTGTTGGGACCACGGGGAGGTGTTAACTATACACTATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGTCTGACTTTTCTTACGATCCTGAAGATTGTTAAGAGAAAAAACGTCAAGTAGTATGCGCATGAAATTCTATAAGGAAAATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATAGCAGGCAAACAGAATGAAGAATATAGTAGATATCTCAAGGGTGGTAGTTGAAAGGGGAAAAGAAACAAGCTTCAAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGTAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATCGATCATGCGACTTATTTGCAGAACGAACTCAAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACTTTAGATAAGAAGTTGAGGTTAATGAATAAAGCAAATAGGAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTTGGGTCGCAAGATGAATATATATTAAAGATTTAGAAAGTGGGAAGGAATATGTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAATCATTCTTTGTGTCAAACTGTTGATAGCCTACATCTGAAGATGGTCGAGCGCTCTAAAGAGTATGAGATACTGAAAAATTATGCCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCTTAAGTTAGGATAACACAAGAATATGAGTCATTGAATATAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGAGAATTGTTTCTCAATGCAACCTCATGCAGATGATTAAATAGATTCTTGAAGATGATATGCAGAGAACTAGGACATTTTGGTCATTTTCATTAATTGTTCATTTTCCCTATTGA

mRNA sequence

ATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCTAAACTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTAAAGGCGGTGATATATAGATGTGGAGATTTTCACAGTGTGCCTTTGTTGGGACCACGGGGAGGTGTTAACTATACACTATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGTCTGACTTTTCTTACGATCCTGAAGATTGTTAAGAGAAAAAACGTCAAGTAGTATGCGCATGAAATTCTATAAGGAAAATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATAGCAGGCAAACAGAATGAAGAATATAGTAGATATCTCAAGGGTGGTAGTTGAAAGGGGAAAAGAAACAAGCTTCAAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGTAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATCGATCATGCGACTTATTTGCAGAACGAACTCAAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACTTTAGATAAGAAGTTGAGGTTAATGAATAAAGCAAATAGGAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTTGGGTCGCAAGATGAATATATATTAAAGATTTAGAAAGTGGGAAGGAATATGTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAATCATTCTTTGTGTCAAACTGTTGATAGCCTACATCTGAAGATGGTCGAGCGCTCTAAAGAGTATGAGATACTGAAAAATTATGCCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCTTAAGTTAGGATAACACAAGAATATGAGTCATTGAATATAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGAGAATTGTTTCTCAATGCAACCTCATGCAGATGATTAAATAGATTCTTGAAGATGATATGCAGAGAACTAGGACATTTTGGTCATTTTCATTAATTGTTCATTTTCCCTATTGA

Coding sequence (CDS)

ATGCCTTTAAAGGCGGTGATATATAGATGTGGAGATTTTCACAGTGTGCCTTTGTTGGGACCACGGGGAGGTGTTAACTATACACTATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGTCTGACTTTTCTTACGATCCTGAAGATTGTTAA

Protein sequence

MPLKAVIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC

Homology

[Close]

BLAST of MELO3C035366.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.8e-25
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MPLKAVIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 60
          MPLKAVIYRCGDFHSVPLLGP GGVNY  LLVLRQVWLKQFIPPTHNLQESDFSYD EDC
Sbjct: 1  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 60

[Close]

BLAST of MELO3C035366.2 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-14
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 60
           M  K ++YRCG FHS+PLLGP G V+Y  L+VLRQ+W++QFIP TH+L+ S+F+YD   C
Sbjct: 217 MSTKPMMYRCGKFHSLPLLGPCGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDVRFC 276

[Close]

BLAST of MELO3C035366.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 60
           M  K ++YRCG FHS+ LLGP G V+Y  L+VLRQ+W++QFIP TH+L+ S+F+YD   C
Sbjct: 325 MSTKPMMYRCGKFHSLSLLGPWGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDIGFC 384

[Close]

BLAST of MELO3C035366.2 vs. NCBI nr
Match: XP_016709254.1 (PREDICTED: uncharacterized protein LOC107923581 [Gossypium hirsutum])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6   VIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPED 60
           V+YRCG F+ VPLLG  G + Y  LLVLRQ  L+QF+P TH L +S+F+Y   D
Sbjct: 254 VLYRCGSFNWVPLLGILGAIGYAPLLVLRQFGLRQFVPATHGLTQSEFAYREAD 307

[Close]

BLAST of MELO3C035366.2 vs. NCBI nr
Match: XP_016716456.1 (PREDICTED: uncharacterized protein LOC107929524 [Gossypium hirsutum])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6   VIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPED 60
           ++YRCG F+ VPLLG  G + Y  LLVLRQ  L+QF+P TH L +S+F+Y   D
Sbjct: 252 ILYRCGSFNWVPLLGIWGAIGYAPLLVLRQFGLRQFVPATHGLTQSEFAYREAD 305

[Close]

BLAST of MELO3C035366.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-25
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MPLKAVIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 60
          MPLKAVIYRCGDFHSVPLLGP GGVNY  LLVLRQVWLKQFIPPTHNLQESDFSYD EDC
Sbjct: 1  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 60

[Close]

BLAST of MELO3C035366.2 vs. TrEMBL
Match: tr|A0A1U8L7X3|A0A1U8L7X3_GOSHI (uncharacterized protein LOC107923581 OS=Gossypium hirsutum OX=3635 GN=LOC107923581 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.6e-09
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6   VIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPED 60
           V+YRCG F+ VPLLG  G + Y  LLVLRQ  L+QF+P TH L +S+F+Y   D
Sbjct: 254 VLYRCGSFNWVPLLGILGAIGYAPLLVLRQFGLRQFVPATHGLTQSEFAYREAD 307

[Close]

BLAST of MELO3C035366.2 vs. TrEMBL
Match: tr|A0A1U8LPD9|A0A1U8LPD9_GOSHI (uncharacterized protein LOC107929524 OS=Gossypium hirsutum OX=3635 GN=LOC107929524 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6   VIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPED 60
           ++YRCG F+ VPLLG  G + Y  LLVLRQ  L+QF+P TH L +S+F+Y   D
Sbjct: 252 ILYRCGSFNWVPLLGIWGAIGYAPLLVLRQFGLRQFVPATHGLTQSEFAYREAD 305

[Close]

BLAST of MELO3C035366.2 vs. TrEMBL
Match: tr|A0A1U8KUG5|A0A1U8KUG5_GOSHI (uncharacterized protein LOC107919394 OS=Gossypium hirsutum OX=3635 GN=LOC107919394 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 6   VIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 61
           V+YRCGDF  VPLLG  G V Y  LL LRQ  L+QF+P T  L E +FSY  + C
Sbjct: 172 VLYRCGDFDWVPLLGIWGAVGYAPLLELRQYRLRQFVPATQGLAECEFSYKDDGC 226

[Close]

BLAST of MELO3C035366.2 vs. TrEMBL
Match: tr|A0A1U8I2B0|A0A1U8I2B0_GOSHI (uncharacterized protein LOC107891678 OS=Gossypium hirsutum OX=3635 GN=LOC107891678 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 6   VIYRCGDFHSVPLLGPRGGVNYTLLLVLRQVWLKQFIPPTHNLQESDFSY 56
           V+YRCGDF  VPLLG  G + Y  LLVLRQ   +QF+P TH L E +FSY
Sbjct: 266 VLYRCGDFDWVPLLGIWGAIGYAPLLVLRQYRSRQFVPATHGLAECEFSY 315

The following BLAST results are available for this feature:

BLAST of MELO3C035366.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900531.1	3.8e-25	93.33	PREDICTED: girdin-like [Cucumis melo]	[more]
XP_022150759.1	8.8e-14	58.33	uncharacterized protein LOC111018820 [Momordica charantia]	[more]
XP_022147190.1	1.7e-12	56.67	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_016709254.1	1.4e-08	55.56	PREDICTED: uncharacterized protein LOC107923581 [Gossypium hirsutum]	[more]
XP_016716456.1	2.5e-08	53.70	PREDICTED: uncharacterized protein LOC107929524 [Gossypium hirsutum]	[more]

BLAST of MELO3C035366.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035366.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035366.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DX26\|A0A1S4DX26_CUCME	2.5e-25	93.33	girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1	[more]
tr\|A0A1U8L7X3\|A0A1U8L7X3_GOSHI	9.6e-09	55.56	uncharacterized protein LOC107923581 OS=Gossypium hirsutum OX=3635 GN=LOC1079235...	[more]
tr\|A0A1U8LPD9\|A0A1U8LPD9_GOSHI	1.6e-08	53.70	uncharacterized protein LOC107929524 OS=Gossypium hirsutum OX=3635 GN=LOC1079295...	[more]
tr\|A0A1U8KUG5\|A0A1U8KUG5_GOSHI	2.1e-08	56.36	uncharacterized protein LOC107919394 OS=Gossypium hirsutum OX=3635 GN=LOC1079193...	[more]
tr\|A0A1U8I2B0\|A0A1U8I2B0_GOSHI	2.1e-08	60.00	uncharacterized protein LOC107891678 OS=Gossypium hirsutum OX=3635 GN=LOC1078916...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035366.2.1	MELO3C035366.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035366.2	Silver-seed gourd	carmedB0174
MELO3C035366.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035366.2	Watermelon (97103) v2	medwmbB127
MELO3C035366.2	Wax gourd	medwgoB176
MELO3C035366.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035366.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035366.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035366.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035366.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035366.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035366.2	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C035366.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035366.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035366.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035366.2	Watermelon (Charleston Gray)	medwcgB127
MELO3C035366.2	Watermelon (97103) v1	medwmB165