MELO3C035360.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035360.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMP domain-containing protein
Locationchr12 : 7607030 .. 7607509 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTCCAAACTACTTTCTAAGCTCTCCCCTCACTCCCCCACGATCATAGATGCTACCGTTTCCTCTCCTTACTCTTCTTCATCTTCAAATTTAAGACCCCAAGATGATCTTTCAACGGCTCTTGCCAAGCATAATACAGTTGAAGCCCATCTGGCTCAGGTTGAAAATCGACTCAAAAATTGGTCTATCCCAAAATTAGAGGCCAACCAAGTGTATAAGATCAATACCTTCAATTTTTCTCAGCAAGACGTTATCGTCATTACTGAAGAAAACGTGGCAATGAAGAATGAATTCACTGCTATCAAACTCTTACCTGAAGAAACTCTCTTCAAAGTCAAAGAAAAGTTCAAGTACCTTCATATAGGATGCGTCCAAGTTGCCTTAAAACCTCTCTTTAGAGAAGGTTTAGATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTTAGATTTACTCCCTCTCTCTTAGGAATT

mRNA sequence

ATGCTTTCCAAACTACTTTCTAAGCTCTCCCCTCACTCCCCCACGATCATAGATGCTACCGTTTCCTCTCCTTACTCTTCTTCATCTTCAAATTTAAGACCCCAAGATGATCTTTCAACGGCTCTTGCCAAGCATAATACAGTTGAAGCCCATCTGGCTCAGGTTGAAAATCGACTCAAAAATTGGTCTATCCCAAAATTAGAGGCCAACCAAGTGTATAAGATCAATACCTTCAATTTTTCTCAGCAAGACGTTATCGTCATTACTGAAGAAAACGTGGCAATGAAGAATGAATTCACTGCTATCAAACTCTTACCTGAAGAAACTCTCTTCAAAGTCAAAGAAAAGTTCAAGTACCTTCATATAGGATGCGTCCAAGTTGCCTTAAAACCTCTCTTTAGAGAAGGTTTAGATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTTAGATTTACTCCCTCTCTCTTAGGAATT

Coding sequence (CDS)

ATGCTTTCCAAACTACTTTCTAAGCTCTCCCCTCACTCCCCCACGATCATAGATGCTACCGTTTCCTCTCCTTACTCTTCTTCATCTTCAAATTTAAGACCCCAAGATGATCTTTCAACGGCTCTTGCCAAGCATAATACAGTTGAAGCCCATCTGGCTCAGGTTGAAAATCGACTCAAAAATTGGTCTATCCCAAAATTAGAGGCCAACCAAGTGTATAAGATCAATACCTTCAATTTTTCTCAGCAAGACGTTATCGTCATTACTGAAGAAAACGTGGCAATGAAGAATGAATTCACTGCTATCAAACTCTTACCTGAAGAAACTCTCTTCAAAGTCAAAGAAAAGTTCAAGTACCTTCATATAGGATGCGTCCAAGTTGCCTTAAAACCTCTCTTTAGAGAAGGTTTAGATGTTCCTGTCTACCTTGCTCTAAGAGACAAGAGGCATCTTAGATTTACTCCCTCTCTCTTAGGAATT

Protein sequence

MLSKLLSKLSPHSPTIIDATVSSPYSSSSSNLRPQDDLSTALAKHNTVEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFTAIKLLPEETLFKVKEKFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI
Homology
[Close]
BLAST of MELO3C035360.2 vs. NCBI nr
Match: KGN65521.1 (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 122/160 (76.25%), Postives = 135/160 (84.38%), Query Frame = 0 

Query: 1   MLSKLLSKLSPHSPTIIDATVSSPYSSSSSNLRPQDDLSTALAKHNTVEAHLAQVENRLK 60
           M+ KLLSKLS H+PTIID TV       SSN R + DLS A+AK    E+ LAQ+ENRLK
Sbjct: 1   MILKLLSKLSLHTPTIIDTTV-------SSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60

Query: 61  NWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFTAIKLLPEETLFKVKEKFKYL 120
           NWSIPKLEA +VY+INTFNFSQQD+IVITEENVAMK+EFT +KLLPEETLF+ +EKFKYL
Sbjct: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120

Query: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 161
           HI CVQVALKPLFREGLDV VYLALRDKRH RFTPSLLGI
Sbjct: 121 HIECVQVALKPLFREGLDVSVYLALRDKRHRRFTPSLLGI 153

[Close]
BLAST of MELO3C035360.2 vs. NCBI nr
Match: XP_016900528.1 (PREDICTED: uncharacterized protein LOC107990934 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 41  ALAKHNTVEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFT 100
           ALAKHNT EAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQ VIVITEENVAMK+E T
Sbjct: 2   ALAKHNTTEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELT 61

Query: 101 AIKLLPEETLFKVKEKFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 160
           AIKLLP+ETLFKVKEKFKYLHIGCVQVALKPLFREGLDV VYLALRDKRHLRFTPSLLGI
Sbjct: 62  AIKLLPKETLFKVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRHLRFTPSLLGI 121

[Close]
BLAST of MELO3C035360.2 vs. NCBI nr
Match: XP_016901152.1 (PREDICTED: uncharacterized protein LOC107991186 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 8.5e-48
Identity = 99/109 (90.83%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 52  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFTAIKLLPEETLF 111
           +AQVENRLKNWSIPK++ +QVYKINTFNFSQQDVIVITEENVAMK+EFTAI LLPEETLF
Sbjct: 1   MAQVENRLKNWSIPKVDPSQVYKINTFNFSQQDVIVITEENVAMKDEFTAINLLPEETLF 60

Query: 112 KVKEKFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 161
           KVK KFKYLHIG VQVALKPLF+EGLDVPVYLALRDKRHLRFTPSLLGI
Sbjct: 61  KVKNKFKYLHIGYVQVALKPLFKEGLDVPVYLALRDKRHLRFTPSLLGI 109

[Close]
BLAST of MELO3C035360.2 vs. NCBI nr
Match: PHU04683.1 (Polyadenylate-binding protein RBP47B [Capsicum chinense])

HSP 1 Score: 106.3 bits (264), Expect = 9.8e-20
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = 0 

Query: 23  SPYSSSSSNLRPQDDLSTALAKHNTVE-----AHLAQVENRLKNWSIPKLEANQVYKINT 82
           +P ++S S+ R   D S      NTV        +A +EN L+NWSIP+   N +Y+I  
Sbjct: 624 APGTASGSHGRYHADTSVKCHVKNTVNLSSQATPIATIENDLQNWSIPEESFNTIYQIGK 683

Query: 83  FNFSQQDVIVITEENVAMKNEFTAIKLLPEETLFKVKEKFKYLHIGCVQVALKPLFREGL 142
           F+F ++  I  +E  +A+ N    I+L  E  + + K +F YLH+G VQVA+KPLFR+GL
Sbjct: 684 FSFLKKHNIKTSESTIAINNSLEIIQLFNELDINRFKHQFNYLHVGLVQVAIKPLFRQGL 743

Query: 143 DVPVYLALRDKRHLRFTPSLLGI 161
           D+PV   LRD R L F  SLLG+
Sbjct: 744 DIPVCAILRDARLLNFDDSLLGV 766

[Close]
BLAST of MELO3C035360.2 vs. NCBI nr
Match: PHT26901.1 (hypothetical protein CQW23_33494 [Capsicum baccatum])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 52  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFTAIKLLPEETLF 111
           +A +EN L+NWSIP+   N +Y+I  F+F ++  I  +E  VA+ N    I+L  E  + 
Sbjct: 550 IATIENDLQNWSIPEESFNTIYQIGKFSFLKKHNIKTSESTVAINNSLEIIQLFNELDIN 609

Query: 112 KVKEKFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 161
           + K +F YLH+G VQVA+KPLFR+GLD+PV   LRD R L F  SLLG+
Sbjct: 610 RFKHQFNYLHVGLVQVAIKPLFRQGLDIPVCAILRDARLLNFDDSLLGV 658

[Close]
BLAST of MELO3C035360.2 vs. TrEMBL
Match: tr|A0A0A0M024|A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 122/160 (76.25%), Postives = 135/160 (84.38%), Query Frame = 0 

Query: 1   MLSKLLSKLSPHSPTIIDATVSSPYSSSSSNLRPQDDLSTALAKHNTVEAHLAQVENRLK 60
           M+ KLLSKLS H+PTIID TV       SSN R + DLS A+AK    E+ LAQ+ENRLK
Sbjct: 1   MILKLLSKLSLHTPTIIDTTV-------SSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60

Query: 61  NWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFTAIKLLPEETLFKVKEKFKYL 120
           NWSIPKLEA +VY+INTFNFSQQD+IVITEENVAMK+EFT +KLLPEETLF+ +EKFKYL
Sbjct: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120

Query: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 161
           HI CVQVALKPLFREGLDV VYLALRDKRH RFTPSLLGI
Sbjct: 121 HIECVQVALKPLFREGLDVSVYLALRDKRHRRFTPSLLGI 153

[Close]
BLAST of MELO3C035360.2 vs. TrEMBL
Match: tr|A0A1S4DX30|A0A1S4DX30_CUCME (uncharacterized protein LOC107990934 OS=Cucumis melo OX=3656 GN=LOC107990934 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 9.6e-56
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 41  ALAKHNTVEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFT 100
           ALAKHNT EAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQ VIVITEENVAMK+E T
Sbjct: 2   ALAKHNTTEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELT 61

Query: 101 AIKLLPEETLFKVKEKFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 160
           AIKLLP+ETLFKVKEKFKYLHIGCVQVALKPLFREGLDV VYLALRDKRHLRFTPSLLGI
Sbjct: 62  AIKLLPKETLFKVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRHLRFTPSLLGI 121

[Close]
BLAST of MELO3C035360.2 vs. TrEMBL
Match: tr|A0A1S4DYV2|A0A1S4DYV2_CUCME (uncharacterized protein LOC107991186 OS=Cucumis melo OX=3656 GN=LOC107991186 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.6e-48
Identity = 99/109 (90.83%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 52  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFTAIKLLPEETLF 111
           +AQVENRLKNWSIPK++ +QVYKINTFNFSQQDVIVITEENVAMK+EFTAI LLPEETLF
Sbjct: 1   MAQVENRLKNWSIPKVDPSQVYKINTFNFSQQDVIVITEENVAMKDEFTAINLLPEETLF 60

Query: 112 KVKEKFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 161
           KVK KFKYLHIG VQVALKPLF+EGLDVPVYLALRDKRHLRFTPSLLGI
Sbjct: 61  KVKNKFKYLHIGYVQVALKPLFKEGLDVPVYLALRDKRHLRFTPSLLGI 109

[Close]
BLAST of MELO3C035360.2 vs. TrEMBL
Match: tr|A0A2G3BE08|A0A2G3BE08_CAPCH (Polyadenylate-binding protein RBP47B OS=Capsicum chinense OX=80379 GN=BC332_25505 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.5e-20
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = 0 

Query: 23  SPYSSSSSNLRPQDDLSTALAKHNTVE-----AHLAQVENRLKNWSIPKLEANQVYKINT 82
           +P ++S S+ R   D S      NTV        +A +EN L+NWSIP+   N +Y+I  
Sbjct: 624 APGTASGSHGRYHADTSVKCHVKNTVNLSSQATPIATIENDLQNWSIPEESFNTIYQIGK 683

Query: 83  FNFSQQDVIVITEENVAMKNEFTAIKLLPEETLFKVKEKFKYLHIGCVQVALKPLFREGL 142
           F+F ++  I  +E  +A+ N    I+L  E  + + K +F YLH+G VQVA+KPLFR+GL
Sbjct: 684 FSFLKKHNIKTSESTIAINNSLEIIQLFNELDINRFKHQFNYLHVGLVQVAIKPLFRQGL 743

Query: 143 DVPVYLALRDKRHLRFTPSLLGI 161
           D+PV   LRD R L F  SLLG+
Sbjct: 744 DIPVCAILRDARLLNFDDSLLGV 766

[Close]
BLAST of MELO3C035360.2 vs. TrEMBL
Match: tr|A0A2G2V1L4|A0A2G2V1L4_CAPBA (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33494 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 52  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKNEFTAIKLLPEETLF 111
           +A +EN L+NWSIP+   N +Y+I  F+F ++  I  +E  VA+ N    I+L  E  + 
Sbjct: 550 IATIENDLQNWSIPEESFNTIYQIGKFSFLKKHNIKTSESTVAINNSLEIIQLFNELDIN 609

Query: 112 KVKEKFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGI 161
           + K +F YLH+G VQVA+KPLFR+GLD+PV   LRD R L F  SLLG+
Sbjct: 610 RFKHQFNYLHVGLVQVAIKPLFRQGLDIPVCAILRDARLLNFDDSLLGV 658

The following BLAST results are available for this feature:
BLAST of MELO3C035360.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65521.12.0e-5776.25hypothetical protein Csa_1G434190 [Cucumis sativus][more]
XP_016900528.11.4e-5595.00PREDICTED: uncharacterized protein LOC107990934 [Cucumis melo][more]
XP_016901152.18.5e-4890.83PREDICTED: uncharacterized protein LOC107991186 [Cucumis melo][more]
PHU04683.19.8e-2041.96Polyadenylate-binding protein RBP47B [Capsicum chinense][more]
PHT26901.12.2e-1947.71hypothetical protein CQW23_33494 [Capsicum baccatum][more]
BLAST of MELO3C035360.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035360.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035360.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M024|A0A0A0M024_CUCSA1.3e-5776.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1[more]
tr|A0A1S4DX30|A0A1S4DX30_CUCME9.6e-5695.00uncharacterized protein LOC107990934 OS=Cucumis melo OX=3656 GN=LOC107990934 PE=... [more]
tr|A0A1S4DYV2|A0A1S4DYV2_CUCME5.6e-4890.83uncharacterized protein LOC107991186 OS=Cucumis melo OX=3656 GN=LOC107991186 PE=... [more]
tr|A0A2G3BE08|A0A2G3BE08_CAPCH6.5e-2041.96Polyadenylate-binding protein RBP47B OS=Capsicum chinense OX=80379 GN=BC332_2550... [more]
tr|A0A2G2V1L4|A0A2G2V1L4_CAPBA1.4e-1947.71Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33494 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028919Viral_movement
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035360.2.1MELO3C035360.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028919Viral movement proteinPFAMPF01107MPcoord: 85..158
e-value: 2.2E-10
score: 40.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035360.2Silver-seed gourdcarmedB0174
MELO3C035360.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035360.2Watermelon (97103) v2medwmbB127
MELO3C035360.2Wax gourdmedwgoB176
MELO3C035360.2Cucumber (Gy14) v2cgybmedB009
MELO3C035360.2Cucumber (Gy14) v1cgymedB370
MELO3C035360.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035360.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035360.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035360.2Wild cucumber (PI 183967)cpimedB011
MELO3C035360.2Cucumber (Chinese Long) v2cumedB010
MELO3C035360.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035360.2Watermelon (Charleston Gray)medwcgB127
MELO3C035360.2Watermelon (97103) v1medwmB165