MELO3C035359.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035359.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr12 : 7678949 .. 7679466 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAATCGAACAATAGTAGACTTCGAAATGTTGCAGATGATCCACAAAAAGTCCTAAATATATGTAACGATAACGAGTAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTAATCCACTTCAGAGGAGACATGCTTTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAATAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGATTATGTTAGTCTAGTAATGATGATGCCAGCATTTGAAACGACATATTATGATTCATGAGTCGGTCAATCGTCGGACTTTGAAACAAGATATTACAATTCAGAGGCAGGTCCATCACCATCAAACTTTGGGCAATAATACTATGATTTAGGAAGCGATCAATCGTCTTCATACATGCATGGTCATGGGCGTGATCGTGGAGAACATAAAGAATATTTGTACTACGAAATGCCTGCAACCGTACCCGAACAATTAGATGAGCAACAACCAGAAGAGAATCAGGG

mRNA sequence

CAGAAATCGAACAATAGTAGACTTCGAAATGTTGCAGATGATCCACAAAAAGTCCTAAATATATGTAACGATAACGAGTAGTACATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTAATCCACTTCAGAGGAGACATGCTTTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAATAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGATTATGTTAGTCTAGTAATGATGATGCCAGCATTTGAAACGACATATTATGATTCATGAGTCGGTCAATCGTCGGACTTTGAAACAAGATATTACAATTCAGAGGCAGGTCCATCACCATCAAACTTTGGGCAATAATACTATGATTTAGGAAGCGATCAATCGTCTTCATACATGCATGGTCATGGGCGTGATCGTGGAGAACATAAAGAATATTTGTACTACGAAATGCCTGCAACCGTACCCGAACAATTAGATGAGCAACAACCAGAAGAGAATCAGGG

Coding sequence (CDS)

ATGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTAATCCACTTCAGAGGAGACATGCTTTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAATAA

Protein sequence

MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE

Homology

[Close]

BLAST of MELO3C035359.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
           MENIHYMYDVPIVP P+QRR  LVQE DQLEEVDQH E
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGE 114

[Close]

BLAST of MELO3C035359.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
          MENIHYMYDVPIVP P+QRR  LVQE DQLEEVDQH E
Sbjct: 57 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGE 94

[Close]

BLAST of MELO3C035359.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-04
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
           MENIHYMY+V IVP  +QRR  LVQE +QLEEV QHVE
Sbjct: 189 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVE 226

[Close]

BLAST of MELO3C035359.2 vs. NCBI nr
Match: XP_008461671.1 (PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-04
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
           MENIHYMY+V IVP  +QRR  LVQE +QLEEV QHVE
Sbjct: 182 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVE 219

[Close]

BLAST of MELO3C035359.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
           MENIHYMYDVPIVP P+QRR  LVQE DQLEEVDQH E
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGE 114

[Close]

BLAST of MELO3C035359.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
          MENIHYMYDVPIVP P+QRR  LVQE DQLEEVDQH E
Sbjct: 57 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGE 94

[Close]

BLAST of MELO3C035359.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-04
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
           MENIHYMY+V IVP  +QRR  LVQE +QLEEV QHVE
Sbjct: 182 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVE 219

[Close]

BLAST of MELO3C035359.2 vs. TrEMBL
Match: tr|A0A1S3CF42|A0A1S3CF42_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-04
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPNPLQRRHALVQEPDQLEEVDQHVE 39
           MENIHYMY+V IVP  +QRR  LVQE +QLEEV QHVE
Sbjct: 189 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVE 226

The following BLAST results are available for this feature:

BLAST of MELO3C035359.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449513.1	4.6e-08	84.21	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]
XP_016900498.1	4.6e-08	84.21	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]
XP_008461670.1	2.3e-04	73.68	PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo]	[more]
XP_008461671.1	2.3e-04	73.68	PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C035359.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035359.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035359.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLK4\|A0A1S3BLK4_CUCME	3.0e-08	84.21	mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
tr\|A0A1S4DWZ9\|A0A1S4DWZ9_CUCME	3.0e-08	84.21	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX...	[more]
tr\|A0A1S3CF98\|A0A1S3CF98_CUCME	1.5e-04	73.68	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1	[more]
tr\|A0A1S3CF42\|A0A1S3CF42_CUCME	1.5e-04	73.68	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035359.2.1	MELO3C035359.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035359.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035359.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035359.2	Watermelon (Charleston Gray)	medwcgB127
MELO3C035359.2	Watermelon (97103) v1	medwmB165
MELO3C035359.2	Silver-seed gourd	carmedB0174
MELO3C035359.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035359.2	Watermelon (97103) v2	medwmbB127
MELO3C035359.2	Wax gourd	medwgoB176
MELO3C035359.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035359.2	Cucumber (Gy14) v1	cgymedB370
MELO3C035359.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035359.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035359.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035359.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035359.2	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C035359.2	Wild cucumber (PI 183967)	cpimedB011