MELO3C035358.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035358.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionZf-CCHC domain-containing protein
Locationchr12 : 7607920 .. 7608857 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATGAGCAACTTGGCTCTGATACCATTAGTGGTCGGATGCCAACTACCGCACTACATCTCTCAAAAATTCTATCAAACCATGACAGCAAACTCTGTCAATCAACAAATAGATTGGACAAATCTCACCTATGGAGATATTTCATCCACAGTCCAAATGATATGTGTTAATCTCTGCACAGAGAATAAACACACGACGAAGGTAATCAAAGATTCCGACTACAGGAAAGAATTAGGCACCTTCTGCAAGCAATATGGCCTGTCTCAAGGACCAAAGGAAGAAAAGAAGAAAAAGAAAAAATATTCCTCCAAAAAATTCTTTAGAAAAAGCAAGAAAAGATACTCTTCAAAAACTACTAATACGATATGCTTCAAATGCAATCAAAAGGGTCACTATGCAAATCGTTGTCCCCTAAAGGATAAAATCAATGCCATGAAGATAGATGAAGCGAAAACCAATCCCTTCTTTATGCCATAAGATCGGATGATGATACATCTTCTCAAATGGAATCTTCATCGGAAGAAGACTATATCAATATTCTACAAGAAGAAGGGTCCTCTTCTGAAGAAGAATTCTACTCTCAAAGTGACTCAAGCGATGACGAAGGAGCAATACCCTGCACAGGACGATGTGCTGGTAAGTGTTCTGGCCACATTAATGTCATCACCAAGGATCAAGAAACTCTTTTTGACCTCATCGAGCAGATCCCTGATGAAGAAGCAAAAAGAACCTACCTCCTCAAATTAAAGCAAAGTTTAGAAGAACAAGTGCCTCAAAAGACAATTCAAAATCCGATTATGTATTTGTATCAAGACATACTAAATCGAGTAAAAGGCGAAGCAAAAATACCCATTCAAGTTGAAGATCTTCATCATGAGGTAAAAATCCTCAAAAGAGAAGTTGCTGAAAACAAACAACGACTAATCTACCTTGAAAAT

mRNA sequence

GAAATGAGCAACTTGGCTCTGATACCATTAGTGGTCGGATGCCAACTACCGCACTACATCTCTCAAAAATTCTATCAAACCATGACAGCAAACTCTGTCAATCAACAAATAGATTGGACAAATCTCACCTATGGAGATATTTCATCCACAGTCCAAATGATATGTGTTAATCTCTGCACAGAGAATAAACACACGACGAAGGTAATCAAAGATTCCGACTACAGGAAAGAATTAGGCACCTTCTGCAAGCAATATGGCCTGTCTCAAGGACCAAAGGAAGAAAAGAAGAAAAAGAAAAAATATTCCTCCAAAAAATTCTTTAGAAAAAGCAAGAAAAGATACTCTTCAAAAACTACTAATACGATATGCTTCAAATGCAATCAAAAGGGTCACTATGCAAATCGTTGTCCCCTAAAGGATAAAATCAATGCCATGAAGATAGATGAAGCGAAAACCAATCCCTTCTTTATGCCATAAGATCGGATGATGATACATCTTCTCAAATGGAATCTTCATCGGAAGAAGACTATATCAATATTCTACAAGAAGAAGGGTCCTCTTCTGAAGAAGAATTCTACTCTCAAAGTGACTCAAGCGATGACGAAGGAGCAATACCCTGCACAGGACGATGTGCTGGTAAGTGTTCTGGCCACATTAATGTCATCACCAAGGATCAAGAAACTCTTTTTGACCTCATCGAGCAGATCCCTGATGAAGAAGCAAAAAGAACCTACCTCCTCAAATTAAAGCAAAGTTTAGAAGAACAAGTGCCTCAAAAGACAATTCAAAATCCGATTATGTATTTGTATCAAGACATACTAAATCGAGTAAAAGGCGAAGCAAAAATACCCATTCAAGTTGAAGATCTTCATCATGAGGTAAAAATCCTCAAAAGAGAAGTTGCTGAAAACAAACAACGACTAATCTACCTTGAAAAT

Coding sequence (CDS)

ATGAGCAACTTGGCTCTGATACCATTAGTGGTCGGATGCCAACTACCGCACTACATCTCTCAAAAATTCTATCAAACCATGACAGCAAACTCTGTCAATCAACAAATAGATTGGACAAATCTCACCTATGGAGATATTTCATCCACAGTCCAAATGATATGTGTTAATCTCTGCACAGAGAATAAACACACGACGAAGGTAATCAAAGATTCCGACTACAGGAAAGAATTAGGCACCTTCTGCAAGCAATATGGCCTGTCTCAAGGACCAAAGGAAGAAAAGAAGAAAAAGAAAAAATATTCCTCCAAAAAATTCTTTAGAAAAAGCAAGAAAAGATACTCTTCAAAAACTACTAATACGATATGCTTCAAATGCAATCAAAAGGGTCACTATGCAAATCGTTGTCCCCTAAAGGATAAAATCAATGCCATGAAGATAGATGAAGCGAAAACCAATCCCTTCTTTATGCCATAA

Protein sequence

MSNLALIPLVVGCQLPHYISQKFYQTMTANSVNQQIDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDSDYRKELGTFCKQYGLSQGPKEEKKKKKKYSSKKFFRKSKKRYSSKTTNTICFKCNQKGHYANRCPLKDKINAMKIDEAKTNPFFMP
Homology
[Close]
BLAST of MELO3C035358.2 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31
Identity = 83/157 (52.87%), Postives = 98/157 (62.42%), Query Frame = 0 

Query: 15  LPHYISQKFYQTMTANSVNQQIDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDSDYR 74
           LPHYI+QKFYQT+  NS   +IDW  LT GDI++T+Q ICVNLC ENKHT KVIK+ DYR
Sbjct: 322 LPHYIAQKFYQTVVTNSTTNRIDWAELTIGDINATIQQICVNLCLENKHTAKVIKEPDYR 381

Query: 75  KELGTFCKQYGLSQ-----------------------GPKXXXXXXXXXXXXXXXXXXXX 134
           KELGTFCKQYGL                            XXXXXXXXXXX         
Sbjct: 382 KELGTFCKQYGLDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNKGKKDYS 441

Query: 135 XXXXXXXNTICFKCNQKGHYANRCPLKDKINAMKIDE 149
                  +  C+KCN+KGHY+++CPLKDKIN++ IDE
Sbjct: 442 KNRPHKSSVTCYKCNRKGHYSSKCPLKDKINSLTIDE 478

[Close]
BLAST of MELO3C035358.2 vs. NCBI nr
Match: KGN65367.1 (hypothetical protein Csa_1G385030 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 69/102 (67.65%), Postives = 73/102 (71.57%), Query Frame = 0 

Query: 69  KDSDYRKELGTFCKQYGLSQGPK----------------------XXXXXXXXXXXXXXX 128
           KDSDYRKELGTF KQYGLS  PK                      XXXXXXXXXXXXXXX
Sbjct: 97  KDSDYRKELGTFYKQYGLSNRPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 156

Query: 129 XXXXXXXXXXXXNTICFKCNQKGHYANRCPLKDKINAMKIDE 149
           XXXXXXXXXX   TIC+KCNQ GHYANRCPL+D+INA+KIDE
Sbjct: 157 XXXXXXXXXXKTKTICYKCNQSGHYANRCPLRDRINALKIDE 198

[Close]
BLAST of MELO3C035358.2 vs. NCBI nr
Match: XP_023552915.1 (uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 63/164 (38.41%), Postives = 82/164 (50.00%), Query Frame = 0 

Query: 14  QLPHYISQKFYQTMTANSVNQQIDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDSDY 73
           +LP + S++    +     N  I W  L+YG I+S +    + LC E+K   K+      
Sbjct: 161 ELPKHFSRRIKDGL-KTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSVSN 220

Query: 74  RKELGTFCKQYG--------------LSQGPKXXXXXXXXXXXXXXXXXXXXXXXXXXXN 133
           RKELG FC QYG                  PK        XXXXXXXXXXXXXXXXX   
Sbjct: 221 RKELGRFCDQYGCKGIEAPSTSRRKKFKTHPKPYHSYRPRXXXXXXXXXXXXXXXXXRKY 280

Query: 134 T-----------ICFKCNQKGHYANRCPLKDKINAMKIDEAKTN 153
           T            CFKC ++GHYAN+CP++ KIN ++ID+   N
Sbjct: 281 TPTKPHKGKKRQTCFKCREEGHYANKCPIRGKINELEIDQELKN 323

[Close]
BLAST of MELO3C035358.2 vs. NCBI nr
Match: XP_023522280.1 (uncharacterized protein LOC111786173, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 65/163 (39.88%), Postives = 83/163 (50.92%), Query Frame = 0 

Query: 15  LPHYISQKFYQTMTANSVNQQIDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDSDYR 74
           LP + S++    +     N  I W  L+YG I+S +    + LC E+K   K+   S+ R
Sbjct: 153 LPKHFSRRIKDGL-KTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLSSISN-R 212

Query: 75  KELGTFCKQYG--------------LSQGPKXXXXXXXXXXXXXXXXXXXXXXXXXXXNT 134
           KELG FC QYG              +   PK     XXXXXXXXXXXXXXXXXX     T
Sbjct: 213 KELGRFCDQYGCKGIEAPSTSRRKKVKTHPKPYNSYXXXXXXXXXXXXXXXXXXSRRKYT 272

Query: 135 -----------ICFKCNQKGHYANRCPLKDKINAMKIDEAKTN 153
                       CFKC ++GHYAN CP++ KIN + ID+   N
Sbjct: 273 PTKTHRGKKKQTCFKCREEGHYANECPIRGKINELDIDQELKN 313

[Close]
BLAST of MELO3C035358.2 vs. NCBI nr
Match: XP_023520850.1 (uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07
Identity = 60/163 (36.81%), Postives = 76/163 (46.63%), Query Frame = 0 

Query: 15  LPHYISQKFYQTMTANSVNQQIDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDSDYR 74
           LP + S++    +     N  I W  L+YG I+S +    + LC E+K   K+      R
Sbjct: 471 LPKHFSRRIKDGL-KTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNR 530

Query: 75  KELGTFCKQYGLS--QGPK-----------------------XXXXXXXXXXXXXXXXXX 134
           KELG FC QYG    + PK                       XXXXXXXXXXXXXXX   
Sbjct: 531 KELGRFCDQYGCKGIEAPKTSRQKKVKTHPKPYHSYXXXXXXXXXXXXXXXXXXXXXKYI 590

Query: 135 XXXXXXXXXNTICFKCNQKGHYANRCPLKDKINAMKIDEAKTN 153
                       CFKC  +GHYA +CP+K KIN + ID+   N
Sbjct: 591 PTKTHRGKKKQTCFKCRVEGHYAKKCPIKGKINELDIDQELKN 632

[Close]
BLAST of MELO3C035358.2 vs. TrEMBL
Match: tr|A0A0A0LWY2|A0A0A0LWY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385030 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.3e-12
Identity = 69/102 (67.65%), Postives = 73/102 (71.57%), Query Frame = 0 

Query: 69  KDSDYRKELGTFCKQYGLSQGPK----------------------XXXXXXXXXXXXXXX 128
           KDSDYRKELGTF KQYGLS  PK                      XXXXXXXXXXXXXXX
Sbjct: 97  KDSDYRKELGTFYKQYGLSNRPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 156

Query: 129 XXXXXXXXXXXXNTICFKCNQKGHYANRCPLKDKINAMKIDE 149
           XXXXXXXXXX   TIC+KCNQ GHYANRCPL+D+INA+KIDE
Sbjct: 157 XXXXXXXXXXKTKTICYKCNQSGHYANRCPLRDRINALKIDE 198

[Close]
BLAST of MELO3C035358.2 vs. TrEMBL
Match: tr|A0A2I4DDE5|A0A2I4DDE5_9ROSI (uncharacterized protein LOC108979052 OS=Juglans regia OX=51240 GN=LOC108979052 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 36/140 (25.71%), Postives = 64/140 (45.71%), Query Frame = 0 

Query: 15  LPHYISQKFYQTMTANSVNQQIDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDSDYR 74
           LP   + K  + +T    +  +++   TYGDI S V+ + +++C + +   + +++S   
Sbjct: 19  LPRLFAYKVKEELT--GADGLLNYEEYTYGDIFSVVKKLGISMCHDQRMLREQMRNSKKA 78

Query: 75  K-ELGTFCKQYGLSQGPKXXXXXXXXXXXXXXXXXXXXXXXXXXXNTICFKCNQKGHYAN 134
           K E+GTFC+Q+GL    +                              CFKC + GH+A+
Sbjct: 79  KYEMGTFCEQFGLPNSKETSSGK-------------------------CFKCGKTGHFAD 131

Query: 135 RCPLKDKINAMKIDEAKTNP 154
           +CP K K    K+ +   NP
Sbjct: 139 KCPKKAKAFKKKLSQMDINP 131

[Close]
BLAST of MELO3C035358.2 vs. TrEMBL
Match: tr|A0A1Q3D4B5|A0A1Q3D4B5_CEPFO (Zf-CCHC domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_30772 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 35/121 (28.93%), Postives = 55/121 (45.45%), Query Frame = 0 

Query: 36  IDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDS-DYRKELGTFCKQYGLSQGPKXXX 95
           + +  LTYGDI ST+  I + +C + K + ++ KDS  Y+KELG FC Q+   + P    
Sbjct: 188 VPYEKLTYGDIVSTITKIGLEICYDIKMSKQIKKDSKTYKKELGDFCTQFEYYKKPN--- 247

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXNTICFKCNQKGHYANRCPLKDKINAMKIDEAKTNPF 155
                                   +TIC+ C + GH A  C ++ +I  + + E   N  
Sbjct: 248 --KRKTHFKANKFQKSNTDFPKTNSTICYNCGKPGHIAKYCNIRKQIKKLDLTEDHKNQL 303

[Close]
BLAST of MELO3C035358.2 vs. TrEMBL
Match: tr|K7LUV1|K7LUV1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G158700 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-06
Identity = 36/150 (24.00%), Postives = 62/150 (41.33%), Query Frame = 0 

Query: 15  LPHYISQKFYQTMTANSVNQQIDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDSDYR 74
           LP  +  K    +   S N  I + NL+YG + S VQ + + +C ++K   ++ K+    
Sbjct: 431 LPRSLGDKVRDKIHNRSTNGDIPYDNLSYGQLISYVQKVALKICQDDKIQRQLAKEKSLN 490

Query: 75  K-ELGTFCKQYGLSQGPKXXXXXXXXXXXXXXXXXXXXXXXXXXXN-------------- 134
           K +LG+FC+Q+GLS  PK                           +              
Sbjct: 491 KRDLGSFCEQFGLSACPKQMKKQNPKMEFQKKHASKRRFLGKKYSDKSSTNKEINVPKSK 550

Query: 135 --TICFKCNQKGHYANRCPLKDKINAMKID 148
              +C+ C ++GH +  C LK K+  + +D
Sbjct: 551 TKVVCYNCEKQGHISKYCKLKRKLRNLSLD 580

[Close]
BLAST of MELO3C035358.2 vs. TrEMBL
Match: tr|A0A1Q3BMS0|A0A1Q3BMS0_CEPFO (Zf-CCHC domain-containing protein/MP domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12827 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 34/121 (28.10%), Postives = 54/121 (44.63%), Query Frame = 0 

Query: 36  IDWTNLTYGDISSTVQMICVNLCTENKHTTKVIKDS-DYRKELGTFCKQYGLSQGPKXXX 95
           + +  LTYGDI ST+    + +C + K + ++ KDS  Y+KELG FC Q+G         
Sbjct: 374 VPYEKLTYGDIVSTITKTGLEICYDIKMSKQIKKDSKTYKKELGDFCTQFGYE------- 433

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXNTICFKCNQKGHYANRCPLKDKINAMKIDEAKTNPF 155
                                   N+IC+ C + GH A  C ++ +I  +++ E   N  
Sbjct: 434 ------TFKPPPSKNLPKPKIDRKNSICYNCGKTGHIAKYCYIRKQIKKLELTEDHKNQI 481

The following BLAST results are available for this feature:
BLAST of MELO3C035358.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151716.11.4e-3152.87uncharacterized protein LOC111019629 [Momordica charantia][more]
KGN65367.11.3e-1167.65hypothetical protein Csa_1G385030 [Cucumis sativus][more]
XP_023552915.12.2e-0838.41uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo][more]
XP_023522280.13.2e-0739.88uncharacterized protein LOC111786173, partial [Cucurbita pepo subsp. pepo][more]
XP_023520850.14.2e-0736.81uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C035358.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035358.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035358.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWY2|A0A0A0LWY2_CUCSA8.3e-1267.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385030 PE=4 SV=1[more]
tr|A0A2I4DDE5|A0A2I4DDE5_9ROSI2.3e-0625.71uncharacterized protein LOC108979052 OS=Juglans regia OX=51240 GN=LOC108979052 P... [more]
tr|A0A1Q3D4B5|A0A1Q3D4B5_CEPFO2.3e-0628.93Zf-CCHC domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 ... [more]
tr|K7LUV1|K7LUV1_SOYBN3.1e-0624.00Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G158700 PE=4 SV=1[more]
tr|A0A1Q3BMS0|A0A1Q3BMS0_CEPFO5.2e-0628.10Zf-CCHC domain-containing protein/MP domain-containing protein (Fragment) OS=Cep... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035358.2.1MELO3C035358.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 121..137
e-value: 0.0051
score: 25.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 122..136
e-value: 2.5E-5
score: 24.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 122..136
score: 9.982
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 113..153
e-value: 2.8E-7
score: 32.6
NoneNo IPR availablePANTHERPTHR33054FAMILY NOT NAMEDcoord: 22..150
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 110..140

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035358.2Wax gourdmedwgoB176
MELO3C035358.2Cucumber (Gy14) v2cgybmedB009
MELO3C035358.2Cucumber (Gy14) v1cgymedB370
MELO3C035358.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035358.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035358.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035358.2Wild cucumber (PI 183967)cpimedB011
MELO3C035358.2Cucumber (Chinese Long) v2cumedB010
MELO3C035358.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035358.2Watermelon (Charleston Gray)medwcgB127
MELO3C035358.2Watermelon (97103) v1medwmB165
MELO3C035358.2Silver-seed gourdcarmedB0174
MELO3C035358.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035358.2Watermelon (97103) v2medwmbB127