MELO3C035343.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035343.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Homeobox-leucine zipper protein HOX9
Location	chr12 : 6329695 .. 6330219 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGA

mRNA sequence

GCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGA

Coding sequence (CDS)

GCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAA

Protein sequence

ANRRKNIIDISRKVVERGKETSFEQPNQWIEKSIKLEEKNRLLEQENEKLRKETSQWMDHATYLQNKLEKIKSFLKKSR

Homology

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BLAST of MELO3C035343.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   ANRRKNIIDISRKVVERGKETSFEQPNQWIEKSIKLE 38
           ANRRKNIIDISR+VVERGKETSFEQPNQWI+KSI+LE
Sbjct: 95  ANRRKNIIDISREVVERGKETSFEQPNQWIKKSIELE 131

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BLAST of MELO3C035343.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   ANRRKNIIDISRKVVERGKETSFEQPNQWIEKSIKLE 38
           ANRRKNIIDISR+VVERGKETSFEQPNQWI+KSI+LE
Sbjct: 95  ANRRKNIIDISREVVERGKETSFEQPNQWIKKSIELE 131

The following BLAST results are available for this feature:

BLAST of MELO3C035343.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900531.1	2.3e-09	91.89	PREDICTED: girdin-like [Cucumis melo]	[more]

BLAST of MELO3C035343.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035343.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035343.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DX26\|A0A1S4DX26_CUCME	1.5e-09	91.89	girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035343.2.1	MELO3C035343.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..60

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035343.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035343.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035343.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C035343.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035343.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C035343.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035343.2	Cucurbita pepo (Zucchini)	cpemedB583
MELO3C035343.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035343.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035343.2	Cucumber (Chinese Long) v2	cumedB173
MELO3C035343.2	Melon (DHL92) v3.6.1	medmedB072
MELO3C035343.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035343.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C035343.2	Watermelon (97103) v1	medwmB143
MELO3C035343.2	Silver-seed gourd	carmedB0452
MELO3C035343.2	Silver-seed gourd	carmedB1052
MELO3C035343.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035343.2	Watermelon (97103) v2	medwmbB142
MELO3C035343.2	Wax gourd	medwgoB176