MELO3C035315.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C035315.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionATP synthase subunit alpha
Locationchr12 : 4323117 .. 4324024 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAATTTGTCAGTGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGAGAATGTATGGATTGTTGTCTTTGGTAGTGATATCGCTATTAAAGAAGGAGATCTTGTCAAGCACACTGGATCGATTGTGGATATTCCAGCAAGGTTATGCTTGGGTGTATGGTCGGCACCTTGGGAGCACCTATTGATGGAAGAGGGGCTTTCAGCGATCATGAGCGAAGACGTATCAAAGTGAAAGCCCTTGGGATAATTTAACGTAAATCAGTGCACGAGCCTATGGAAATAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTGTAGGTAAGAGCCAACGAGAACTGATAATCAAGAAGCGACAAACTAGAAAAATTGCTATAGCTATTAATACCATATTAAACCAAAAGCAAATCAACTCCACTCAATTCAAATGCTTTGCTATGAACCTCTTTTATTTTCTTGTTCGGATTCTGCCTCTTATTATCATTTTTGTTTTCTATCAGAGCAAAAGACAGAGAACAAATCAAAGGAGGGATAAGTTGGGCGGTTCTCCTATCCATCTTTTTCATACTTTTGAGTATGATCCTATTTCTGAATATTAGAAAAGGATCTTTTTTAAAATGAAAAAGAGGAAAAATATTTTTTTGGATCCTCTGTTTAAGCCTTCTATTTGACCTTAATCTGCCTCTACTTTCTATGTTTTCAATTTCATAGTCTTTTTTCTACTATTTGCGCCAAGTTTATTATTGATTTTTTCTCTAATTATTCTCTCTAATTCTTTAGAGAATTAATCTTCTCCTTTGGAGGATTCCTTTGCCCTACAGGTCCTCTTGATACCTTGCCCATGACTCCAAATACGATGGAGGAAACCTCCCTTTTTAATTGAATCTGAAGATTAGAGAGGGAGAATT

mRNA sequence

ATGGTAGAATTTGTCAGTGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGAGAATGTATGGATTGTTGTCTTTGGTAGTGATATCGCTATTAAAGAAGGAGATCTTGTCAAGCACACTGGATCGATTGTGGATATTCCAGCAAGGTTATGCTTGGGTGTATGGTCGGCACCTTGGGAGCACCTATTGATGGAAGAGGGGCTTTCAGCGATCATGAGCGAAGACGTATCAAAGTGAAAGCCCTTGGGATAATTTAACGTAAATCAGTGCACGAGCCTATGGAAATAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTGTAGGTAAGAGCCAACGAGAACTGATAATCAAGAAGCGACAAACTAGAAAAATTGCTATAGCTATTAATACCATATTAAACCAAAAGCAAATCAACTCCACTCAATTCAAATGCTTTGCTATGAACCTCTTTTATTTTCTTGTTCGGATTCTGCCTCTTATTATCATTTTTGTTTTCTATCAGAGCAAAAGACAGAAATCTGAAGATTAGAGAGGGAGAATT

Coding sequence (CDS)

ATGGAAATAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTGTAGGTAAGAGCCAACGAGAACTGATAATCAAGAAGCGACAAACTAGAAAAATTGCTATAGCTATTAATACCATATTAAACCAAAAGCAAATCAACTCCACTCAATTCAAATGCTTTGCTATGAACCTCTTTTATTTTCTTGTTCGGATTCTGCCTCTTATTATCATTTTTGTTTTCTATCAGAGCAAAAGACAGAAATCTGAAGATTAG

Protein sequence

MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINSTQFKCFAMNLFYFLVRILPLIIIFVFYQSKRQKSED
BLAST of MELO3C035315.2 vs. NCBI nr
Match: AEN56122.1 (putative ATP synthase F1 subunit 1 (mitochondrion) [Cucumis melo subsp. melo])

HSP 1 Score: 85.5 bits (210), Expect = 9.2e-14
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINSTQFKCFAMNLFYFL 60
           M+ GLKAVDS     + QRELII  RQT K AIAI+TILNQKQI+STQFKCFA+NL +FL
Sbjct: 148 MQTGLKAVDS-----RGQRELIIGDRQTGKTAIAIDTILNQKQIHSTQFKCFALNLCFFL 207

Query: 61  VRILPLIIIFV 72
           VRILP I IF+
Sbjct: 208 VRILPPISIFL 213

BLAST of MELO3C035315.2 vs. NCBI nr
Match: AEP32426.1 (ATPase synthase subunit 1, partial (mitochondrion) [Silene vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAINTILNQKQ+NS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAINTILNQKQLNS 193

BLAST of MELO3C035315.2 vs. NCBI nr
Match: CDM84610.1 (unnamed protein product [Triticum aestivum])

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAINTILNQKQ+NS
Sbjct: 131 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAINTILNQKQMNS 176

BLAST of MELO3C035315.2 vs. NCBI nr
Match: ACD02144.1 (F1-ATPase alpha subunit, partial (mitochondrion) [Ophioglossum engelmannii])

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINST 48
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQIN+T
Sbjct: 89  MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQINAT 135

BLAST of MELO3C035315.2 vs. NCBI nr
Match: AAQ74481.1 (F1-ATPase alpha subunit, partial (mitochondrion) [Arisaema triphyllum])

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINST 48
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQINS+
Sbjct: 115 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQINSS 161

BLAST of MELO3C035315.2 vs. TAIR10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-12
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QREL+I  RQT K  IAI+TILNQKQINS
Sbjct: 418 MQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTILNQKQINS 463

BLAST of MELO3C035315.2 vs. TAIR10
Match: ATMG01190.1 (ATP synthase subunit 1)

HSP 1 Score: 66.6 bits (161), Expect = 8.0e-12
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QREL+I  RQT K  IAI+TILNQKQINS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTIAIDTILNQKQINS 193

BLAST of MELO3C035315.2 vs. TAIR10
Match: ATCG00120.1 (ATP synthase subunit alpha)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQIN 46
           ++ GL A+DS++P+G+ QRELII  RQT K A+A +TILNQ+  N
Sbjct: 147 LQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN 191

BLAST of MELO3C035315.2 vs. Swiss-Prot
Match: sp|Q06735|ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-11
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQ+NS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQLNS 193

BLAST of MELO3C035315.2 vs. Swiss-Prot
Match: sp|P05495|ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN=ATPA PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-11
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQ+NS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQLNS 193

BLAST of MELO3C035315.2 vs. Swiss-Prot
Match: sp|P18260|ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-11
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQ+NS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNS 193

BLAST of MELO3C035315.2 vs. Swiss-Prot
Match: sp|P05494|ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-11
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQ+NS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNS 193

BLAST of MELO3C035315.2 vs. Swiss-Prot
Match: sp|P26854|ATPAM_MARPO (ATP synthase subunit alpha, mitochondrial OS=Marchantia polymorpha OX=3197 GN=ATPA PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-11
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQIN+
Sbjct: 147 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQINA 192

BLAST of MELO3C035315.2 vs. TrEMBL
Match: tr|G3EU37|G3EU37_CUCME (Putative ATP synthase F1 subunit 1 OS=Cucumis melo subsp. melo OX=412675 GN=atp1 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.1e-14
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINSTQFKCFAMNLFYFL 60
           M+ GLKAVDS     + QRELII  RQT K AIAI+TILNQKQI+STQFKCFA+NL +FL
Sbjct: 148 MQTGLKAVDS-----RGQRELIIGDRQTGKTAIAIDTILNQKQIHSTQFKCFALNLCFFL 207

Query: 61  VRILPLIIIFV 72
           VRILP I IF+
Sbjct: 208 VRILPPISIFL 213

BLAST of MELO3C035315.2 vs. TrEMBL
Match: tr|H8XXL6|H8XXL6_SILVU (ATP synthase subunit alpha (Fragment) OS=Silene vulgaris OX=42043 GN=Atp1.1 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAINTILNQKQ+NS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAINTILNQKQLNS 193

BLAST of MELO3C035315.2 vs. TrEMBL
Match: tr|A0A077RVA5|A0A077RVA5_WHEAT (ATP synthase subunit alpha OS=Triticum aestivum OX=4565 GN=TRAES_3BF037300020CFD_c1 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAINTILNQKQ+NS
Sbjct: 131 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAINTILNQKQMNS 176

BLAST of MELO3C035315.2 vs. TrEMBL
Match: tr|A0A1D5W4W2|A0A1D5W4W2_WHEAT (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINS 47
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAINTILNQKQ+NS
Sbjct: 148 MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAINTILNQKQMNS 193

BLAST of MELO3C035315.2 vs. TrEMBL
Match: tr|B2VPS6|B2VPS6_9MONI (ATP synthase subunit alpha (Fragment) OS=Ophioglossum engelmannii OX=13834 GN=atp1 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   MEIGLKAVDSLVPVGKSQRELIIKKRQTRKIAIAINTILNQKQINST 48
           M+ GLKAVDSLVP+G+ QRELII  RQT K AIAI+TILNQKQIN+T
Sbjct: 89  MQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQINAT 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AEN56122.19.2e-1470.42putative ATP synthase F1 subunit 1 (mitochondrion) [Cucumis melo subsp. melo][more]
AEP32426.13.1e-0978.26ATPase synthase subunit 1, partial (mitochondrion) [Silene vulgaris][more]
CDM84610.14.0e-0978.26unnamed protein product [Triticum aestivum][more]
ACD02144.14.0e-0976.60F1-ATPase alpha subunit, partial (mitochondrion) [Ophioglossum engelmannii][more]
AAQ74481.15.2e-0976.60F1-ATPase alpha subunit, partial (mitochondrion) [Arisaema triphyllum][more]
Match NameE-valueIdentityDescription
AT2G07698.16.1e-1273.91ATPase, F1 complex, alpha subunit protein[more]
ATMG01190.18.0e-1273.91ATP synthase subunit 1[more]
ATCG00120.11.6e-0755.56ATP synthase subunit alpha[more]
Match NameE-valueIdentityDescription
sp|Q06735|ATPAM_BETVU3.8e-1176.09ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=... [more]
sp|P05495|ATPAM_NICPL3.8e-1176.09ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 G... [more]
sp|P18260|ATPAM_HELAN5.0e-1176.09ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P... [more]
sp|P05494|ATPAM_MAIZE5.0e-1176.09ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1[more]
sp|P26854|ATPAM_MARPO5.0e-1176.09ATP synthase subunit alpha, mitochondrial OS=Marchantia polymorpha OX=3197 GN=AT... [more]
Match NameE-valueIdentityDescription
tr|G3EU37|G3EU37_CUCME6.1e-1470.42Putative ATP synthase F1 subunit 1 OS=Cucumis melo subsp. melo OX=412675 GN=atp1... [more]
tr|H8XXL6|H8XXL6_SILVU2.0e-0978.26ATP synthase subunit alpha (Fragment) OS=Silene vulgaris OX=42043 GN=Atp1.1 PE=3... [more]
tr|A0A077RVA5|A0A077RVA5_WHEAT2.6e-0978.26ATP synthase subunit alpha OS=Triticum aestivum OX=4565 GN=TRAES_3BF037300020CFD... [more]
tr|A0A1D5W4W2|A0A1D5W4W2_WHEAT2.6e-0978.26Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1[more]
tr|B2VPS6|B2VPS6_9MONI2.6e-0976.60ATP synthase subunit alpha (Fragment) OS=Ophioglossum engelmannii OX=13834 GN=at... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006811 ion transport
biological_process GO:0015992 proton transport
biological_process GO:0006810 transport
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035315.2.1MELO3C035315.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..82
e-value: 2.9E-11
score: 44.9
NoneNo IPR availablePANTHERPTHR43089FAMILY NOT NAMEDcoord: 1..48