MELO3C035312.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035312.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ATP synthase subunit alpha
Location	chr12 : 4299692 .. 4299958 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGAACTTCAAAACGTCTTTGAAAGTGGATGAAATGGATCGAGTCCTATCTATAGGAGATGGAATTGCATGAGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTAGAATTTGTTAACGGTGTCAAACGAATAGCCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTATATTTGGTAGTGATACTGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCGATTATGGATATTCCAGCAAGAAAGGTTAAGGATGAG

mRNA sequence

ACGAACTTCAAAACGTCTTTGAAAGTGGATGAAATGGATCGAGTCCTATCTATAGGAGATGGAATTGCATGAGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTAGAATTTGTTAACGGTGTCAAACGAATAGCCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTATATTTGGTAGTGATACTGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCGATTATGGATATTCCAGCAAGAAAGGTTAAGGATGAG

Coding sequence (CDS)

ATGGTAGAATTTGTTAACGGTGTCAAACGAATAGCCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTATATTTGGTAGTGATACTGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCGATTATGGATATTCCAGCAAGAAAGGTTAAGGATGAG

Protein sequence

MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARKVKDE

Homology

[Close]

BLAST of MELO3C035312.2 vs. NCBI nr
Match: AAM12446.1 (ATP synthase alpha subunit, partial (mitochondrion) [Lissocarpa guianensis])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF NGVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 24 MVEFANGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 73

[Close]

BLAST of MELO3C035312.2 vs. NCBI nr
Match: AUD38671.1 (ATP synthase F1 subunit 1 (mitochondrion) [Colletoecema dewevrei])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MVEF NGVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVEFANGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. NCBI nr
Match: AAF17039.1 (ATPase alpha subunit, partial (mitochondrion) [Carludovica palmata])

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSIMD+PA K
Sbjct: 24 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIMDVPAGK 73

[Close]

BLAST of MELO3C035312.2 vs. NCBI nr
Match: AAM12427.1 (ATP synthase alpha subunit, partial (mitochondrion) [Cornus suecica])

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSIMD+PA K
Sbjct: 20 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIMDVPAGK 69

[Close]

BLAST of MELO3C035312.2 vs. NCBI nr
Match: AAQ74518.1 (F1-ATPase alpha subunit, partial (mitochondrion) [Cyclanthus bipartitus])

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSIMD+PA K
Sbjct: 21 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIMDVPAGK 70

[Close]

BLAST of MELO3C035312.2 vs. TAIR10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-17
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MV F NGVK +ALNLENENVGIV+FG DTAIKEGDLVKRTGSI+D+PA K
Sbjct: 324 MVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGK 373

[Close]

BLAST of MELO3C035312.2 vs. TAIR10
Match: ATMG01190.1 (ATP synthase subunit 1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-17
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MV F NGVK +ALNLENENVGIV+FG DTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. TAIR10
Match: ATCG00120.1 (ATP synthase subunit alpha)

HSP 1 Score: 50.4 bits (119), Expect = 3.9e-07
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIP 48
          +VEF  G   IALNLE+ NVG+V+ G    I+EG  VK TG I  IP
Sbjct: 53 LVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIP 99

[Close]

BLAST of MELO3C035312.2 vs. Swiss-Prot
Match: sp|Q06735|ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-17
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. Swiss-Prot
Match: sp|P18260|ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-17
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. Swiss-Prot
Match: sp|P05494|ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-17
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. Swiss-Prot
Match: sp|P05495|ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN=ATPA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-17
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. Swiss-Prot
Match: sp|P05492|ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-17
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. TrEMBL
Match: tr|Q8SIE4|Q8SIE4_9ERIC (ATP synthase subunit alpha (Fragment) OS=Lissocarpa guianensis OX=185770 GN=atp1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF NGVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 24 MVEFANGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 73

[Close]

BLAST of MELO3C035312.2 vs. TrEMBL
Match: tr|A0A2H4WZE0|A0A2H4WZE0_9GENT (ATP synthase subunit alpha OS=Colletoecema dewevrei OX=110689 GN=atp1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
           MVEF NGVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSI+D+PA K
Sbjct: 54  MVEFANGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGK 103

[Close]

BLAST of MELO3C035312.2 vs. TrEMBL
Match: tr|S4W7Y4|S4W7Y4_9LILI (ATP synthase subunit alpha (Fragment) OS=Carludovica palmata OX=108411 GN=atpA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSIMD+PA K
Sbjct: 11 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIMDVPAGK 60

[Close]

BLAST of MELO3C035312.2 vs. TrEMBL
Match: tr|Q9T721|Q9T721_9LILI (ATP synthase subunit alpha (Fragment) OS=Carludovica palmata OX=108411 GN=atp1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSIMD+PA K
Sbjct: 24 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIMDVPAGK 73

[Close]

BLAST of MELO3C035312.2 vs. TrEMBL
Match: tr|S4WYK4|S4WYK4_9LILI (ATP synthase subunit alpha (Fragment) OS=Carludovica palmata OX=108411 GN=atpA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MVEFVNGVKRIALNLENENVGIVIFGSDTAIKEGDLVKRTGSIMDIPARK 51
          MVEF +GVK IALNLENENVGIV+FGSDTAIKEGDLVKRTGSIMD+PA K
Sbjct: 9  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIMDVPAGK 58

The following BLAST results are available for this feature:

BLAST of MELO3C035312.2 vs. NCBI nr


Match Name	E-value	Identity	Description
AAM12446.1	2.5e-15	88.00	ATP synthase alpha subunit, partial (mitochondrion) [Lissocarpa guianensis]	[more]
AUD38671.1	2.5e-15	88.00	ATP synthase F1 subunit 1 (mitochondrion) [Colletoecema dewevrei]	[more]
AAF17039.1	3.2e-15	88.00	ATPase alpha subunit, partial (mitochondrion) [Carludovica palmata]	[more]
AAM12427.1	3.2e-15	88.00	ATP synthase alpha subunit, partial (mitochondrion) [Cornus suecica]	[more]
AAQ74518.1	3.2e-15	88.00	F1-ATPase alpha subunit, partial (mitochondrion) [Cyclanthus bipartitus]	[more]

BLAST of MELO3C035312.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07698.1	2.4e-17	82.00	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	2.4e-17	82.00	ATP synthase subunit 1	[more]
ATCG00120.1	3.9e-07	53.19	ATP synthase subunit alpha	[more]

BLAST of MELO3C035312.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q06735\|ATPAM_BETVU	3.0e-17	86.00	ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=...	[more]
sp\|P18260\|ATPAM_HELAN	3.0e-17	86.00	ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P...	[more]
sp\|P05494\|ATPAM_MAIZE	3.0e-17	86.00	ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1	[more]
sp\|P05495\|ATPAM_NICPL	3.0e-17	86.00	ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 G...	[more]
sp\|P05492\|ATPAM_OENBI	3.0e-17	86.00	ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P...	[more]

BLAST of MELO3C035312.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q8SIE4\|Q8SIE4_9ERIC	1.6e-15	88.00	ATP synthase subunit alpha (Fragment) OS=Lissocarpa guianensis OX=185770 GN=atp1...	[more]
tr\|A0A2H4WZE0\|A0A2H4WZE0_9GENT	1.6e-15	88.00	ATP synthase subunit alpha OS=Colletoecema dewevrei OX=110689 GN=atp1 PE=3 SV=1	[more]
tr\|S4W7Y4\|S4W7Y4_9LILI	2.1e-15	88.00	ATP synthase subunit alpha (Fragment) OS=Carludovica palmata OX=108411 GN=atpA P...	[more]
tr\|Q9T721\|Q9T721_9LILI	2.1e-15	88.00	ATP synthase subunit alpha (Fragment) OS=Carludovica palmata OX=108411 GN=atp1 P...	[more]
tr\|S4WYK4\|S4WYK4_9LILI	2.1e-15	88.00	ATP synthase subunit alpha (Fragment) OS=Carludovica palmata OX=108411 GN=atpA P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:1902600	hydrogen ion transmembrane transport
GO:0046034	ATP metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR036121	ATPase_F1/V1/A1_a/bsu_N_sf
IPR004100	ATPase_F1/V1/A1_a/bsu_N
IPR023366	ATP_synth_asu-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006811	ion transport
biological_process	GO:0015992	proton transport
biological_process	GO:0006810	transport
biological_process	GO:1902600	hydrogen ion transmembrane transport
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035312.2.1	MELO3C035312.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	G3DSA:2.40.30.20		coord: 1..42 e-value: 3.0E-17 score: 64.0
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 2..41 e-value: 9.3E-9 score: 35.6
None	No IPR available	PANTHER	PTHR43089	FAMILY NOT NAMED	coord: 1..48
None	No IPR available	PANTHER	PTHR43089:SF5	ATP SYNTHASE SUBUNIT ALPHA	coord: 1..48
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 1..43

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035312.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C035312.2	Cucumber (Gy14) v1	cgymedB371
MELO3C035312.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035312.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C035312.2	Cucurbita maxima (Rimu)	cmamedB640
MELO3C035312.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035312.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C035312.2	Cucurbita moschata (Rifu)	cmomedB628
MELO3C035312.2	Cucurbita pepo (Zucchini)	cpemedB314
MELO3C035312.2	Cucurbita pepo (Zucchini)	cpemedB561
MELO3C035312.2	Cucurbita pepo (Zucchini)	cpemedB581
MELO3C035312.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C035312.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C035312.2	Melon (DHL92) v3.6.1	medmedB034
MELO3C035312.2	Bottle gourd (USVL1VR-Ls)	lsimedB064
MELO3C035312.2	Bottle gourd (USVL1VR-Ls)	lsimedB183
MELO3C035312.2	Watermelon (Charleston Gray)	medwcgB140
MELO3C035312.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C035312.2	Watermelon (97103) v1	medwmB143
MELO3C035312.2	Watermelon (97103) v1	medwmB174
MELO3C035312.2	Silver-seed gourd	carmedB0451
MELO3C035312.2	Silver-seed gourd	carmedB0734
MELO3C035312.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C035312.2	Watermelon (97103) v2	medwmbB142
MELO3C035312.2	Watermelon (97103) v2	medwmbB140
MELO3C035312.2	Wax gourd	medwgoB156
MELO3C035312.2	Wax gourd	medwgoB169