MELO3C035267.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035267.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr12 : 369459 .. 370029 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCAAATTCCCTATAAGAAACAGAGAAATGCATATCCAAAGTTTGTGAATCATTATATTTCATCATTGTTTTAACTTGTTCAAGTAAATCTATATATATTTTGAATATTTCTGCAAATTTTCCTCTGCTGTGAATGGAGTTTAATAGAAACAGAGTAGTCATTGAGAACAAAACAAACCCTAAATCCATCTTCATCTTCATCTTGATCTTCTTCTTCTTCTTCTTCTTGTTTTTAATGGTATTCATATTGTCATCATTCTGTAGCAGCATCAGGAGTTCATCTAATGGGGATTCAGGTGAGATATCATGATCATAAAGAGAGTTAATTTTAGTTGTAAAACTTGATGTACATATATATATTTCTCTCTGATGGACGTGTGCTGATGTTATGTTCTTCAGATAACACTAGGAGCTGCTCGTTTGTTGAAGCAGTCCAGGTAATTAATTAAATTTATTTTGACTTTGTTTATGTGTATATCTATGCTGTGATGGTTATTTATTCAATGTAGATAAGTAATGTTAGTCACAAAATGGGTAACCTTATAAGTACAGATCGAGTAGATAGCTAG

mRNA sequence

ATCTCAAATTCCCTATAAGAAACAGAGAAATGCATATCCAAAGTTTGTGAATCATTATATTTCATCATTGTTTTAACTTGTTCAAGTAAATCTATATATATTTTGAATATTTCTGCAAATTTTCCTCTGCTGTGAATGGAGTTTAATAGAAACAGAGTAGTCATTGAGAACAAAACAAACCCTAAATCCATCTTCATCTTCATCTTGATCTTCTTCTTCTTCTTCTTCTTGTTTTTAATGGTATTCATATTGTCATCATTCTGTAGCAGCATCAGGAGTTCATCTAATGGGGATTCAGATAACACTAGGAGCTGCTCGTTTGTTGAAGCAGTCCAGATAAGTAATGTTAGTCACAAAATGGGTAACCTTATAAGTACAGATCGAGTAGATAGCTAG

Coding sequence (CDS)

ATGGAGTTTAATAGAAACAGAGTAGTCATTGAGAACAAAACAAACCCTAAATCCATCTTCATCTTCATCTTGATCTTCTTCTTCTTCTTCTTCTTGTTTTTAATGGTATTCATATTGTCATCATTCTGTAGCAGCATCAGGAGTTCATCTAATGGGGATTCAGATAACACTAGGAGCTGCTCGTTTGTTGAAGCAGTCCAGATAAGTAATGTTAGTCACAAAATGGGTAACCTTATAAGTACAGATCGAGTAGATAGCTAG

Protein sequence

MEFNRNRVVIENKTNPKSIFIFILIFFFFFFLFLMVFILSSFCSSIRSSSNGDSDNTRSCSFVEAVQISNVSHKMGNLISTDRVDS
Homology
[Close]
BLAST of MELO3C035267.2 vs. NCBI nr
Match: XP_011658830.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Cucumis sativus] >KGN65854.1 hypothetical protein Csa_1G533610 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-06
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0 

Query: 1  MEFNRNRVVIENKTN-PKSIXXXXXXXXXXXXXXXXXXXXXSFCSSIRSSSNGDSDNTRS 60
          MEFNR+RVVIENKTN     XXXXXXXXXXXXXXXXXXXX SFCSSI SS NGDSDNTRS
Sbjct: 1  MEFNRSRVVIENKTNXXXXXXXXXXXXXXXXXXXXXXXXXSSFCSSIMSSYNGDSDNTRS 60

Query: 61 CSFVEAVQISNVSH 74
          CSF ++VQ S +++
Sbjct: 61 CSFGKSVQYSIIAN 74

[Close]
BLAST of MELO3C035267.2 vs. TrEMBL
Match: tr|A0A0A0LXR9|A0A0A0LXR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533610 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-06
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0 

Query: 1  MEFNRNRVVIENKTN-PKSIXXXXXXXXXXXXXXXXXXXXXSFCSSIRSSSNGDSDNTRS 60
          MEFNR+RVVIENKTN     XXXXXXXXXXXXXXXXXXXX SFCSSI SS NGDSDNTRS
Sbjct: 1  MEFNRSRVVIENKTNXXXXXXXXXXXXXXXXXXXXXXXXXSSFCSSIMSSYNGDSDNTRS 60

Query: 61 CSFVEAVQISNVSH 74
          CSF ++VQ S +++
Sbjct: 61 CSFGKSVQYSIIAN 74

The following BLAST results are available for this feature:
BLAST of MELO3C035267.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658830.15.7e-0677.03PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Cucumis sativus] >KGN6585... [more]
BLAST of MELO3C035267.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035267.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035267.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXR9|A0A0A0LXR9_CUCSA3.7e-0677.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533610 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035267.2.1MELO3C035267.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035267.2Cucumber (Gy14) v2cgybmedB021
MELO3C035267.2Cucumber (Gy14) v1cgymedB253
MELO3C035267.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035267.2Cucurbita maxima (Rimu)cmamedB451
MELO3C035267.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035267.2Cucurbita moschata (Rifu)cmomedB439
MELO3C035267.2Cucurbita pepo (Zucchini)cpemedB561
MELO3C035267.2Cucurbita pepo (Zucchini)cpemedB586
MELO3C035267.2Cucumber (Chinese Long) v2cumedB023
MELO3C035267.2Wild cucumber (PI 183967)cpimedB024
MELO3C035267.2Bottle gourd (USVL1VR-Ls)lsimedB183
MELO3C035267.2Watermelon (Charleston Gray)medwcgB141
MELO3C035267.2Watermelon (97103) v1medwmB143
MELO3C035267.2Silver-seed gourdcarmedB0528
MELO3C035267.2Cucumber (Chinese Long) v3cucmedB023
MELO3C035267.2Watermelon (97103) v2medwmbB142
MELO3C035267.2Wax gourdmedwgoB164