MELO3C035258.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035258.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr12 : 206874 .. 208390 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGTGAGTATAAGAATTTCTTTCATTTTAACTTACGATTATTTCATGTTTTTTTCTCTAACATTATATTGAGCAAGGTCGTCTTCTCAACAACCTAGGACTTCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGGAGCGCCACGTTGCAGAACATAGGCGATGACGATTGCTCTTAGTGCGGAGAAACCTATTTTCCCACACGCCGTTCACTTCAGCCAGGCGATAGGCGATGACGATTGCTCTTAGTGCAGAGAATACATTAAGGTCGTTAAAGACGACCTCCAGGTAATTAAGTCCACTACAAATTTATGATTTTATTTGAAACATATCTAAGTTAACCAATTTAATACGTTATTTTTATAATGTGTAGCGATTTTTTGTGCTTGATTTTAATAATCAAGCAATGAATAGGTTTGTTGAGCATCAAATGCTCACCACCTTTAAAGAGTTCCGGGCCGACTGTTACAGACACTTCAAAAAGTACAGCGACCCCGAGGAAGCTCGTGCCAACCCACCAAACATATTGGTTGGATGTCATGAGGATTGACACTTCCTCTGCGATCACTACATCAGCCGTGCATTCTAGGTATTTATCATGCTTAATTATGATTTCAATCTTTAATATGTATAAGGAATAAACAATATAATTGATTTCATGCAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGTAACCTTACAATTATAGCAGTGGGTCAAAGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTTGGTCGACCGTATGGAGTTGTTTTGGGAAATACATGTTCGAGTTGGGACGTTCATGTCACAGGCCGCAAAGAATGCGCATGTAAGTTATTGAACCAACACTTATGTCCTTATTAATTATATCCTCTTCGTTATATATTTTTGCATGACCTAACTTAGCTTTTAAAATTGTTACAGAATCAAATGCTGGAACTCCAGTCTCAACCTACTCCAGAGGTAGTCAGCCACTCTCTGGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGATTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAAGACAACGAGTGCAAGCAGTTTCACGACATCTTGTTCATCGTCCACACAAAAATAGATTGAATTACAATCTAAACTTAATGAAGCTTTGGAACGGATTGAAGTGCAAGATAGAAATCACGTAGCGTTAGCTTCACAAGTAGAACAAATGCAAAAGTTGATAAAAGACTTGACTCGGGCACAGCAAGGACCACCCATGATCCCTAACTTTGCAGTACGTATATATGTCTCCATTATTCTTAAGTTTTTTGCAATGATAGTATACAGAGAACATATGGATATATGTACTAAACTTACTTGCTTTTGTATCATTGTAGGACCTAAGGTGTAGAATGGCGCGTACGAGCCTCGTTAGAAGACGTATGACTTTGTTTGCAGTTTTTTGTATTATAACTACATTTTTTGTATTATGAACAC

mRNA sequence

ATGCGGCGATTTTTTGTGCTTGATTTTAATAATCAAGCAATGAATAGGTTTGTTGAGCATCAAATGCTCACCACCTTTAAAGAGTTCCGGGCCGACTGTTACAGACACTTCAAAAAGTACAGCGACCCCGAGGAAGCTCGTGCCAACCCACCAAACATATTGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAATGGGTCAAAGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTTGGTCGACCGTATGGAGTTGTTTTGGGAAATACATGTTCGAGTTGGGACGTTCATGTCACAGGCCGCAAAGAATGCGCATGTAAAATCAAATGCTGGAACTCCAGTCTCAACCTACTCCAGAGGTAGTCAGCCACTCTCTGGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGATTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAAGACAACGAGTGCAAGCAGTTTCACGACATCTTGTTCATCGTCCACACAAAAATAGATTGAATTACAATCTAAACTTAATGAAGCTTTGGAACGGATTGAAGTGCAAGATAGAAATCACGTAGCGTTAGCTTCACAAGTAGAACAAATGCAAAAGTTGATAAAAGACTTGACTCGGGCACAGCAAGGACCACCCATGATCCCTAACTTTGCAGTACGTATATATGTCTCCATTATTCTTAAGTTTTTTGCAATGATAGTATACAGAGAACATATGGATATATGTACTAAACTTACTTGCTTTTGTATCATTGTAGGACCTAAGGTGTAGAATGGCGCGTACGAGCCTCGTTAGAAGACGTATGACTTTGTTTGCAGTTTTTTGTATTATAACTACATTTTTTGTATTATGAACAC

Coding sequence (CDS)

ATGCGGCGATTTTTTGTGCTTGATTTTAATAATCAAGCAATGAATAGGTTTGTTGAGCATCAAATGCTCACCACCTTTAAAGAGTTCCGGGCCGACTGTTACAGACACTTCAAAAAGTACAGCGACCCCGAGGAAGCTCGTGCCAACCCACCAAACATATTGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAATGGGTCAAAGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTTGGTCGACCGTATGGAGTTGTTTTGGGAAATACATGTTCGAGTTGGGACGTTCATGTCACAGGCCGCAAAGAATGCGCATGTAAAATCAAATGCTGGAACTCCAGTCTCAACCTACTCCAGAGGTAGTCAGCCACTCTCTGGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGATTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAAGACAACGAGTGCAAGCAGTTTCACGACATCTTGTTCATCGTCCACACAAAAATAGATTGAATTACAATCTAAACTTAATGAAGCTTTGGAACGGATTGAAGTGCAAGATAGAAATCACGTAG

Protein sequence

MRRFFVLDFNNQAMNRFVEHQMLTTFKEFRADCYRHFKKYSDPEEARANPPNILEQSRTNKAARQNGSKSFLQRQHELAEKKGELVDRMELFWEIHVRVGTFMSQAAKNAHVKSNAGTPVSTYSRGSQPLSGMRYAIRCWVDDQITQKALVGDPSRRPARQRVQAVSRHLVHRPHKNRLNYNLNLMKLWNGLKCKIEIT
Homology
[Close]
BLAST of MELO3C035258.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 166.4 bits (420), Expect = 9.9e-38
Identity = 98/158 (62.03%), Postives = 111/158 (70.25%), Query Frame = 0 

Query: 1   MRRFFVLDFNNQAMNRFVEHQMLTTFKEFRADCYRHFKKYSDPEEARANPPNIL------ 60
           ++RFFVLDFN+QAMNRFVEHQM+TTFKEF+ DC+RHFKKYSDPEEARANPPN L      
Sbjct: 113 LQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

Query: 61  --------------EQSRTNKAARQ-------NGSKSFLQRQHELAEKKGELVDRMELFW 120
                         EQS TNKAARQ       +GSKSFLQRQ+ELAE+KGE VD +ELF 
Sbjct: 173 WHFLYDHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELFR 232

Query: 121 EIHVRVGTFMSQAAKNAHVKSNAGTPVSTYSRGSQPLS 132
           E HVR GTFMSQAA++AH +        T   GSQPLS
Sbjct: 233 ETHVRAGTFMSQAAEDAHNQMLELQSQPTL-EGSQPLS 269

[Close]
BLAST of MELO3C035258.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 0 

Query: 133 MRYAIRCWVDDQITQKALVGDPSRRPARQRVQAVSRHLVHRPHKNRLNYNLNLMKLWNGL 192
           M+YAIRCWVDDQ TQKALVGDPSRRPA +RVQAV R L     K RLNY LN MKLWNGL
Sbjct: 102 MKYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRRL----QKKRLNYKLNFMKLWNGL 161

Query: 193 KCKIEIT 200
           K KIEIT
Sbjct: 162 KYKIEIT 164

[Close]
BLAST of MELO3C035258.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 1   MRRFFVLDFNNQAMNRFVEHQMLTTFKEFRADCYRHFKKYSDPEEARANPPNIL 55
           ++RFFVLDFN+QA+NRFVEHQMLTTFKEF  DC+RHFK      EARANPPN+L
Sbjct: 122 LQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVL 169

[Close]
BLAST of MELO3C035258.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 3   RFFVLDFNNQAMNRFVEHQMLTTFKEFRADCYRHFKKYSDPEEARANPPNIL 55
           +FFVLDF++QAMN  VE+QM  TFKEF  DC++ FKKYSDPEEARANPPN+L
Sbjct: 128 QFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

[Close]
BLAST of MELO3C035258.2 vs. NCBI nr
Match: BAD93311.1 (NBS-LRR type resistance protein, partial [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 145 ITQKALVGDPSRRPARQRVQAVSRHLVHRPHKNRLNYNLNLMKLWNGLKCKIEI 199
           + +KALVGDPSRRPA ++VQAV RHLV  P K RLNY LN MKLWNGLK KIEI
Sbjct: 9   LLKKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEI 62

[Close]
BLAST of MELO3C035258.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.6e-38
Identity = 98/158 (62.03%), Postives = 111/158 (70.25%), Query Frame = 0 

Query: 1   MRRFFVLDFNNQAMNRFVEHQMLTTFKEFRADCYRHFKKYSDPEEARANPPNIL------ 60
           ++RFFVLDFN+QAMNRFVEHQM+TTFKEF+ DC+RHFKKYSDPEEARANPPN L      
Sbjct: 113 LQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

Query: 61  --------------EQSRTNKAARQ-------NGSKSFLQRQHELAEKKGELVDRMELFW 120
                         EQS TNKAARQ       +GSKSFLQRQ+ELAE+KGE VD +ELF 
Sbjct: 173 WHFLYDHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELFR 232

Query: 121 EIHVRVGTFMSQAAKNAHVKSNAGTPVSTYSRGSQPLS 132
           E HVR GTFMSQAA++AH +        T   GSQPLS
Sbjct: 233 ETHVRAGTFMSQAAEDAHNQMLELQSQPTL-EGSQPLS 269

[Close]
BLAST of MELO3C035258.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 0 

Query: 133 MRYAIRCWVDDQITQKALVGDPSRRPARQRVQAVSRHLVHRPHKNRLNYNLNLMKLWNGL 192
           M+YAIRCWVDDQ TQKALVGDPSRRPA +RVQAV R L     K RLNY LN MKLWNGL
Sbjct: 102 MKYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRRL----QKKRLNYKLNFMKLWNGL 161

Query: 193 KCKIEIT 200
           K KIEIT
Sbjct: 162 KYKIEIT 164

[Close]
BLAST of MELO3C035258.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 1   MRRFFVLDFNNQAMNRFVEHQMLTTFKEFRADCYRHFKKYSDPEEARANPPNIL 55
           ++RFFVLDFN+QA+NRFVEHQMLTTFKEF  DC+RHFK      EARANPPN+L
Sbjct: 122 LQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVL 169

[Close]
BLAST of MELO3C035258.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 3   RFFVLDFNNQAMNRFVEHQMLTTFKEFRADCYRHFKKYSDPEEARANPPNIL 55
           +FFVLDF++QAMN  VE+QM  TFKEF  DC++ FKKYSDPEEARANPPN+L
Sbjct: 128 QFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

[Close]
BLAST of MELO3C035258.2 vs. TrEMBL
Match: tr|Q588X0|Q588X0_CUCME (NBS-LRR type resistance protein (Fragment) OS=Cucumis melo OX=3656 GN=MRGA-3 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 145 ITQKALVGDPSRRPARQRVQAVSRHLVHRPHKNRLNYNLNLMKLWNGLKCKIEI 199
           + +KALVGDPSRRPA ++VQAV RHLV  P K RLNY LN MKLWNGLK KIEI
Sbjct: 9   LLKKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEI 62

The following BLAST results are available for this feature:
BLAST of MELO3C035258.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34071.19.9e-3862.03CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
ADN34241.11.0e-1877.61NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
XP_016901035.11.4e-1274.07PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
XP_016901155.11.4e-1273.08PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
BAD93311.11.9e-1274.07NBS-LRR type resistance protein, partial [Cucumis melo][more]
BLAST of MELO3C035258.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035258.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035258.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME6.6e-3862.03CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|E5GCP2|E5GCP2_CUCME6.8e-1977.61NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME9.5e-1374.07uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME9.5e-1373.08LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|Q588X0|Q588X0_CUCME1.2e-1274.07NBS-LRR type resistance protein (Fragment) OS=Cucumis melo OX=3656 GN=MRGA-3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004252Probable_transposase_24
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035258.2.1MELO3C035258.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004252Probable transposase, Ptta/En/Spm, plantPFAMPF03004Transposase_24coord: 54..111
e-value: 3.6E-7
score: 30.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..70

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035258.2Cucumber (Gy14) v2cgybmedB027
MELO3C035258.2Cucumber (Gy14) v1cgymedB158
MELO3C035258.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035258.2Cucurbita maxima (Rimu)cmamedB224
MELO3C035258.2Cucurbita maxima (Rimu)cmamedB449
MELO3C035258.2Cucurbita maxima (Rimu)cmamedB451
MELO3C035258.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035258.2Cucurbita moschata (Rifu)cmomedB211
MELO3C035258.2Cucurbita moschata (Rifu)cmomedB437
MELO3C035258.2Cucurbita moschata (Rifu)cmomedB439
MELO3C035258.2Cucurbita pepo (Zucchini)cpemedB558
MELO3C035258.2Cucurbita pepo (Zucchini)cpemedB561
MELO3C035258.2Cucurbita pepo (Zucchini)cpemedB586
MELO3C035258.2Cucurbita pepo (Zucchini)cpemedB590
MELO3C035258.2Wild cucumber (PI 183967)cpimedB031
MELO3C035258.2Cucumber (Chinese Long) v2cumedB030
MELO3C035258.2Bottle gourd (USVL1VR-Ls)lsimedB183
MELO3C035258.2Watermelon (Charleston Gray)medwcgB141
MELO3C035258.2Watermelon (97103) v1medwmB143
MELO3C035258.2Silver-seed gourdcarmedB0343
MELO3C035258.2Silver-seed gourdcarmedB0528
MELO3C035258.2Silver-seed gourdcarmedB0530
MELO3C035258.2Cucumber (Chinese Long) v3cucmedB030
MELO3C035258.2Watermelon (97103) v2medwmbB142
MELO3C035258.2Wax gourdmedwgoB164