MELO3C035152.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035152.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	NBS-LRR type resistance protein
Location	chr11 : 26014434 .. 26015149 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAGAAAGCACGGACGAACAAGGCTGCTAGACAGAGGCAGCCTTACAATCATAGTAGCAGTCCAAGTCGTTTCTACAACGACAGTACGAGCTCGCTGAGAGAAAAAGGGAGCCGGTCTATCGTGTGGAGTTGTTCCAACAAGCACATGTTCGAGCTGGGACGTTCGTGTCACAGGCCGCCGAGGATGCGTATGTAAGTTATGTCCTTATTAATTATCCTCTTTCATTATGTATTTTTGCGCGTTATCTAACATAGTTTTTAAATTTGTTGCAGAATCAAATGCTGAAACTCCAATCCCAACCTACCTCAGAGGGTAGTTAGCCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGTGTAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCACAGGACGACGAGTTCGAGCAGTTCGTCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATGAAGCTTTGGAACGGATTGAAGTGCAACATAGAAATCACCAAGCGTTAGCTTCACAAGTGGAAACATTGAAAAAGATGGTGGAAGAATTAACTCATGCACAATAGAGACCACCACATGATCCCTAGCTCTGCGGTACTTTTTGTTATGTTTGCGTTTTTTTGTATTATGATAACTACATTTTTGTATTAAACTTACTAATATTTTGTTAACTTATT

mRNA sequence

ATGCAGGAGAAAGCACGGACGAACAAGGCTGCTAGACAGAGGCAGCCTTACAATCATAGTAGCAGTCCAAGTCGTTTCTACAACGACAGTACGAGCTCGCTGAGAGAAAAAGGGAGCCGGTCTATCGTGTGGAGTTGTTCCAACAAGCACATGTTCGAGCTGGGACGTTCGTGTCACAGGCCGCCGAGGATGCAATCAAATGCTGAAACTCCAATCCCAACCTACCTCAGAGGGTAGTTAGCCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGTGTAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCACAGGACGACGAGTTCGAGCAGTTCGTCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATGAAGCTTTGGAACGGATTGAAGTGCAACATAGAAATCACCAAGCGTTAGCTTCACAAGTGGAAACATTGAAAAAGATGGTGGAAGAATTAACTCATGCACAATAGAGACCACCACATGATCCCTAGCTCTGCGGTACTTTTTGTTATGTTTGCGTTTTTTTGTATTATGATAACTACATTTTTGTATTAAACTTACTAATATTTTGTTAACTTATT

Coding sequence (CDS)

ATGCAGGAGAAAGCACGGACGAACAAGGCTGCTAGACAGAGGCAGCCTTACAATCATAGTAGCAGTCCAAGTCGTTTCTACAACGACAGTACGAGCTCGCTGAGAGAAAAAGGGAGCCGGTCTATCGTGTGGAGTTGTTCCAACAAGCACATGTTCGAGCTGGGACGTTCGTGTCACAGGCCGCCGAGGATGCAATCAAATGCTGAAACTCCAATCCCAACCTACCTCAGAGGGTAG

Protein sequence

MQEKARTNKAARQRQPYNHSSSPSRFYNDSTSSLREKGSRSIVWSCSNKHMFELGRSCHRPPRMQSNAETPIPTYLRG

Homology

[Close]

BLAST of MELO3C035152.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 21 SSPSRFYNDSTSSLREKGSRSIVWSCSNKHMFELGRSCHRPPRMQ 66
          + PS FYNDS SSL+E+GSRSIVW+CS KH FELG SC R PRM+
Sbjct: 36 AGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLPRMR 80

[Close]

BLAST of MELO3C035152.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 21 SSPSRFYNDSTSSLREKGSRSIVWSCSNKHMFELGRSCHRPPRMQ 66
          + PS FYNDS SSL+E+GSRSIVW+CS KH FELG SC R PRM+
Sbjct: 36 AGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLPRMR 80

The following BLAST results are available for this feature:

BLAST of MELO3C035152.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34241.1	2.2e-09	71.11	NBS-LRR type resistance protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C035152.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035152.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035152.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCP2\|E5GCP2_CUCME	1.5e-09	71.11	NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035152.2.1	MELO3C035152.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..78

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035152.2	Cucumber (Gy14) v2	cgybmedB383
MELO3C035152.2	Cucumber (Gy14) v1	cgymedB173
MELO3C035152.2	Cucurbita maxima (Rimu)	cmamedB569
MELO3C035152.2	Cucurbita maxima (Rimu)	cmamedB615
MELO3C035152.2	Cucurbita maxima (Rimu)	cmamedB632
MELO3C035152.2	Cucurbita moschata (Rifu)	cmomedB557
MELO3C035152.2	Cucurbita moschata (Rifu)	cmomedB603
MELO3C035152.2	Cucurbita pepo (Zucchini)	cpemedB301
MELO3C035152.2	Cucurbita pepo (Zucchini)	cpemedB799
MELO3C035152.2	Wild cucumber (PI 183967)	cpimedB433
MELO3C035152.2	Cucumber (Chinese Long) v2	cumedB424
MELO3C035152.2	Bottle gourd (USVL1VR-Ls)	lsimedB057
MELO3C035152.2	Watermelon (Charleston Gray)	medwcgB087
MELO3C035152.2	Watermelon (97103) v1	medwmB106
MELO3C035152.2	Silver-seed gourd	carmedB0347
MELO3C035152.2	Silver-seed gourd	carmedB1036
MELO3C035152.2	Cucumber (Chinese Long) v3	cucmedB437
MELO3C035152.2	Watermelon (97103) v2	medwmbB086
MELO3C035152.2	Wax gourd	medwgoB129