MELO3C035076.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035076.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein ROOT HAIR DEFECTIVE 3 homolog
Locationchr11 : 20015166 .. 20018149 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTTAATGTCGTTTTTCGAAAGACGGATGTTTAATGTCAATTTTAAACCGATGTTAAAGATAGAGCTTTAATGTCCGTTTAAAACAAATATTAAACACCCTGCTTTTTTAGAACCGACATTAAAGCTCATTTTTATTTTATTTTCATTTTTTTAATTTTGTAAAAATTCAACTTTCTCTCTCTTACTTTCCTTTTTTCTCAAACCCTCCCACAAACGCTTTTTCATCTTTCTCAAATTTCTTTCACCCTTCTCAATCTCATCACTTTCTTCCCTCTCTTCTTCGACAGTTGTTGCCACCAGCATACATCAGTTTCTTCCATCCCTGTTGTCGTTCGTGTCCTGTCATTGTGCTCGTCGTCGCCACCACCGTGCCCAGCCGTTGCATTTGCAAAATATTTATCGCTCGCTCCTCTCGAGCATTCAACATTTTAGAAATCTTAAAGAACAAACAGAGACAGTCAAGCCTCTTTTTCGAAGATCAACTCCTATCTCCATCTTCATCATTGACTTTCGAGAAGGTTAGACCCCTTTCTTCCTTCTAAGATCTGTATTTTTCTCTCTCCTCTCAATCGCTCTCATACATTCTTTGGCCCTTTTCCAACTTCCAATCTTCATCAGCTTCCCTCTTCCTTCAAATGGGTACGATTTTTTGTTTTACCTATATCCTATCCAACTTGTGTAATCTACATGGAGATGATCCTTTGTATTTCCTTCAGCTTAATTTGAACGTTTTGTTTGATTTGAGTTACGTTGAAGCATCATCAGTGTAATTAATTTCATTTTTTTAATTCAATTGGCACGCGAGGTATAACATATGGATATAGTTTGATTATACATTTCCTGCACCTGTATTTTTAATTATTGTATTGCTAATATAAGGATTCGAGCTACCTCTATTAGGGTGTGATTGATTTGCTCCAAATCTGTTATAGATGATTATTCTATTCAGGAGTGTTAGATCGTTGAATTCTATTCACTATGTGTGTATGTAAGGATATGTATGTGTGTGTATGTATGTATGTATGTTCATATATGTATTTATGTGAACGTACTTATTTTTTGTATCATAACAAGTTAAGATGTATACTTTGGTTGTTTCTTAATTTGCTTTTGTCACATTCTTTTTAAGGATGAAACTGCATTTGAGAAGCAAAGTGCCCTTTTTGCGCTTGTCATGTCAGATATAGTGCTAATAAATATTTGAGTGCCATTAGTTTTGTTTTTCAAATATTTCTTTTATCTTGTAACATGTGTTTCCATTTGATTTTCTTCTAAAATTTATTGTTTCCACGCTATTTTGTTTAAGAAGTTGTTATAATTTAATTTAGGTGGTATCATGATATTAGCCGTGAGCAGGTTGCAAATAAGCCTCTCCTCAAAACTGTATGTCAGGTATTCCCTTTAATCTGGTTAAGAGTCATGGTGTATCTTTTATAGTATTAATTTAATAAATTTCGGTTGCTGTTGTATGCAGGTCATGATGAGATTGTTCTTTCCACGTAAAACAACACTAATGTTTGTCATACATGATAAAACAAGGGTCTGTTACTATTTCCTGAGTAGTTTATATCTTGAGCTGTTATAGAAGAATCATATGTTGCAAGCTTTCAACTTTTCTAATTTTCTTTGTTGCTTTTGTTAATATTTTCTGTATGTAGACACTATTGGAAAATTTAGAGCCTGTTCTTAGAGAGAATGTACAGAAGGTAAATTATTGGTGCTCTTAAATATTGTAATGCTCAGAAAGTGCTATTTTGTTCTTATTTGAATTCCTCCACATTTGTTATGTGGTTAGAGGGTAGTGTTTCTGTAGATAATTGTTCTTGACATATTTTGTCTATTATTATGTTGGAAATTAGGTTGCAAATTTGAGACAGAGATTCTTCCATTCTATTGCCCTAGGGGGACTGGTTGAGGTTGGAAGAAGTACAGTCCGGTCCATATCAAGGTTTTGGAAAGAAGCTAAGTTTGATCATCAATACTTGAATGAAGGGGAAGGGTTTACCACAATCTACAACGCTATCAATACAGTTTGGTCTAGGGCCAGTTTTGTTGGCTGATTTGCGTAAGCTTTTAAATGTTTTTTGGGTCAAGTTAAGTTCGTAGTTGATTTTAGTTTGTGATGGAATTGATTGTTGTATATACTTCAATTTTGAGTTTTTCCATTTGAAGTTTTGAATTAAGTTTTTGTAGGGAAGGGCAGCCTATAGTTTTTGGAAAGACAAGCGGTTGTGTACTAATTATTGTTTGTTATATAGTTTGTACATATACTTTAATTAGTGGAGGAACTTTCTGTTGTACATATACATTAGTTATTAATCACGATCTTATATATTATCTTTAGATTTTGAGTTTTCACTTATAGTGGTTGGATATAATGTGTTTATTCAAATATGTGATTATATATAGGTGCTGGATGATTGTATTTATTATAGTACTCTATGGAAGTGTGGAAAAGTGTGCTGGTATTTTAGGTGTTGAATGATCGTATTTGTTGTAGTCCTATATGGAAGTGTGGAAAAGTGTGCTGGTATTTTAGGTGTTGGATCTTGTGCATTGCAGGTGTTTATTATTGGTTTGCCGTGGAGGGTAGCATGTGTTGTTTGATATGTGTGATTATATATAGATAGATATATTGGAAGATTTGGAGTAGTTAGTCTTATGGTTGAATATAGTTGTGTTTATTGATATGTAATTACATTTAGGTGTTGGATGATGTGTATTGTTATAGTTCTATATGGAAGTGTGAAAAAGTGTATGCTAGAAGTTTAGGTGTTCTTGTATGCATTGCAGGTGAAATAGAAATATAAGGTTTGCCATTGAGTAATAGGCATTCTATAGCTAGCATGCAAGCAATTTTTTTATATTTCACAATATATGATGACGAACATTTACGGACGTAATTCGAGACAAATAATGTCAGTTTCGTCGTCATAAAAAATGGACAATAATGAAACAATGTAATAAAAATAAATTTG

mRNA sequence

ATGGACTTTAATGTCGTTTTTCGAAAGACGGATTTGTTGCCACCAGCATACATCAGTTTCTTCCATCCCTGTTGTCGTTCGTGTCCTGTCATTGTGCTCGTCGTCGCCACCACCGTGCCCAGCCGTTGCATTTGCAAAATATTTATCGCTCGCTCCTCTCGAGCATTCAACATTTTAGAAATCTTAAAGAACAAACAGAGACAGTCAAGCCTCTTTTTCGAAGATCAACTCCTATCTCCATCTTCATCATTGACTTTCGAGAAGGATGAAACTGCATTTGAGAAGCAAAGTGCCCTTTTTGCGCTTGTCATGTGGTATCATGATATTAGCCGTGAGCAGGTTGCAAATAAGCCTCTCCTCAAAACTGTATGTCAGACACTATTGGAAAATTTAGAGCCTGTTCTTAGAGAGAATGTACAGAAGGTTGCAAATTTGAGACAGAGATTCTTCCATTCTATTGCCCTAGGGGGACTGGTTGAGGTTGGAAGAAGTACAGTCCGGTCCATATCAAGGTTTTGGAAAGAAGCTAAGTTTGATCATCAATACTTGAATGAAGGGGAAGGGTTTACCACAATCTACAACGCTATCAATACAGGAAGGGCAGCCTATAGTTTTTGGAAAGACAAGCGGTGCTGGATGATTGTATTTATTATAGTACTCTATGGAAGTGTGGAAAAGTGTGCTGTCCTATATGGAAGTGTGGAAAAGTGTGCTGGTATTTTAGGTGTTGGATCTTGTGCATTGCAGGTGTTGGATGATGTGTATTGTTATAGTTCTATATGGAAGTGTGAAAAAGTGTATGCTAGAAGTTTAGGTGTTCTTGTATGCATTGCAGGTGAAATAGAAATATAAGGTTTGCCATTGAGTAATAGGCATTCTATAGCTAGCATGCAAGCAATTTTTTTATATTTCACAATATATGATGACGAACATTTACGGACGTAATTCGAGACAAATAATGTCAGTTTCGTCGTCATAAAAAATGGACAATAATGAAACAATGTAATAAAAATAAATTTG

Coding sequence (CDS)

ATGGACTTTAATGTCGTTTTTCGAAAGACGGATTTGTTGCCACCAGCATACATCAGTTTCTTCCATCCCTGTTGTCGTTCGTGTCCTGTCATTGTGCTCGTCGTCGCCACCACCGTGCCCAGCCGTTGCATTTGCAAAATATTTATCGCTCGCTCCTCTCGAGCATTCAACATTTTAGAAATCTTAAAGAACAAACAGAGACAGTCAAGCCTCTTTTTCGAAGATCAACTCCTATCTCCATCTTCATCATTGACTTTCGAGAAGGATGAAACTGCATTTGAGAAGCAAAGTGCCCTTTTTGCGCTTGTCATGTGGTATCATGATATTAGCCGTGAGCAGGTTGCAAATAAGCCTCTCCTCAAAACTGTATGTCAGACACTATTGGAAAATTTAGAGCCTGTTCTTAGAGAGAATGTACAGAAGGTTGCAAATTTGAGACAGAGATTCTTCCATTCTATTGCCCTAGGGGGACTGGTTGAGGTTGGAAGAAGTACAGTCCGGTCCATATCAAGGTTTTGGAAAGAAGCTAAGTTTGATCATCAATACTTGAATGAAGGGGAAGGGTTTACCACAATCTACAACGCTATCAATACAGGAAGGGCAGCCTATAGTTTTTGGAAAGACAAGCGGTGCTGGATGATTGTATTTATTATAGTACTCTATGGAAGTGTGGAAAAGTGTGCTGTCCTATATGGAAGTGTGGAAAAGTGTGCTGGTATTTTAGGTGTTGGATCTTGTGCATTGCAGGTGTTGGATGATGTGTATTGTTATAGTTCTATATGGAAGTGTGAAAAAGTGTATGCTAGAAGTTTAGGTGTTCTTGTATGCATTGCAGGTGAAATAGAAATATAA

Protein sequence

MDFNVVFRKTDLLPPAYISFFHPCCRSCPVIVLVVATTVPSRCICKIFIARSSRAFNILEILKNKQRQSSLFFEDQLLSPSSSLTFEKDETAFEKQSALFALVMWYHDISREQVANKPLLKTVCQTLLENLEPVLRENVQKVANLRQRFFHSIALGGLVEVGRSTVRSISRFWKEAKFDHQYLNEGEGFTTIYNAINTGRAAYSFWKDKRCWMIVFIIVLYGSVEKCAVLYGSVEKCAGILGVGSCALQVLDDVYCYSSIWKCEKVYARSLGVLVCIAGEIEI
Homology
[Close]
BLAST of MELO3C035076.2 vs. NCBI nr
Match: OIW09003.1 (hypothetical protein TanjilG_05979 [Lupinus angustifolius])

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-17
Identity = 63/126 (50.00%), Postives = 71/126 (56.35%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 147
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 93  EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLL 152

Query: 148 --------TLLENLEPVLRENVQKVANLRQRFFHSIALGGLVEVGRSTVR------SISR 178
                   T LENLEPVLRE++Q+VA+LRQRF+HSIA GGL    R  V       S  +
Sbjct: 153 FVIRDKTKTPLENLEPVLREDIQRVASLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQQ 212

[Close]
BLAST of MELO3C035076.2 vs. NCBI nr
Match: PKI62324.1 (hypothetical protein CRG98_017325 [Punica granatum])

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-15
Identity = 66/147 (44.90%), Postives = 71/147 (48.30%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 147
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 108 EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM 167

Query: 148 --------TLLENLEPVLRENVQKV---------------------ANLRQRFFHSIALG 178
                   T LENLEPVLRE+VQK+                     ANLRQRFFHSIA G
Sbjct: 168 FVIRDKTRTPLENLEPVLREDVQKIWDSVPKPEAHKETPLSEFFNAANLRQRFFHSIAPG 227

[Close]
BLAST of MELO3C035076.2 vs. NCBI nr
Match: ONI11569.1 (hypothetical protein PRUPE_4G113800 [Prunus persica])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 61/144 (42.36%), Postives = 67/144 (46.53%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLLENLEPVLRENV 147
           +D+T FEKQSALFAL         MW HDI REQ ANKPLLKTV QT  E LEPVLRE++
Sbjct: 106 EDDTTFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQTPFEYLEPVLREDI 165

Query: 148 QK----------------------------------------VANLRQRFFHSIALGGLV 178
           QK                                        VA LRQRFFHSI+ GGL 
Sbjct: 166 QKIWDGVPKPQAHKSTPFSDFFSVEVVALSSYEEKEEKFKEEVAQLRQRFFHSISPGGLA 225

[Close]
BLAST of MELO3C035076.2 vs. NCBI nr
Match: ONI11567.1 (hypothetical protein PRUPE_4G113800 [Prunus persica])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 61/144 (42.36%), Postives = 67/144 (46.53%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLLENLEPVLRENV 147
           +D+T FEKQSALFAL         MW HDI REQ ANKPLLKTV QT  E LEPVLRE++
Sbjct: 106 EDDTTFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQTPFEYLEPVLREDI 165

Query: 148 QK----------------------------------------VANLRQRFFHSIALGGLV 178
           QK                                        VA LRQRFFHSI+ GGL 
Sbjct: 166 QKIWDGVPKPQAHKSTPFSDFFSVEVVALSSYEEKEEKFKEEVAQLRQRFFHSISPGGLA 225

[Close]
BLAST of MELO3C035076.2 vs. NCBI nr
Match: PLY88968.1 (hypothetical protein LSAT_8X90180 [Lactuca sativa])

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-13
Identity = 66/153 (43.14%), Postives = 75/153 (49.02%), Query Frame = 0 

Query: 57  NILEILKNKQRQSSLFFEDQLLSPSSSLTF---EKDETAFEKQSALFALV--------MW 116
           N LE+   K R +S+ F       SS LT     +D+TAFEKQSALFAL         MW
Sbjct: 68  NFLEMDAFKGRHASIPFTYYFGFISSILTVVHSYQDDTAFEKQSALFALAVSDIVLINMW 127

Query: 117 YHDISREQVANKPLLKTVCQTLLENLEPVLRENVQK------------------------ 159
            HDI RE  ANKPLLKTV QT LENLEPVLRE++QK                        
Sbjct: 128 CHDIGREHAANKPLLKTVFQTPLENLEPVLREDIQKIWDSVPKPEVHKETPLKTFFNIEV 187

[Close]
BLAST of MELO3C035076.2 vs. TAIR10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 143
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 110 EDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTML 169

[Close]
BLAST of MELO3C035076.2 vs. TAIR10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 143
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 105 EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM 164

[Close]
BLAST of MELO3C035076.2 vs. TAIR10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-12
Identity = 58/166 (34.94%), Postives = 66/166 (39.76%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLL----------- 147
           +D+T FEKQSALFA+         MW HDI REQ ANKPLLKTV Q +L           
Sbjct: 108 EDDTTFEKQSALFAIAVADIVLINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLL 167

Query: 148 -----------ENLEPVLRENVQK------------------------------------ 178
                      E LE  LRE++QK                                    
Sbjct: 168 FVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNTPLNEFFNVMIVALSSYEEKEKQ 227

[Close]
BLAST of MELO3C035076.2 vs. Swiss-Prot
Match: sp|Q9SSN0|RHD31_ARATH (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-11
Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 143
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 110 EDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTML 169

[Close]
BLAST of MELO3C035076.2 vs. Swiss-Prot
Match: sp|P93042|RHD3_ARATH (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-11
Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 143
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 105 EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM 164

[Close]
BLAST of MELO3C035076.2 vs. Swiss-Prot
Match: sp|Q0JLS6|RHD3_ORYSJ (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-11
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 143
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 105 EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLL 164

[Close]
BLAST of MELO3C035076.2 vs. Swiss-Prot
Match: sp|Q2QMH2|RHD31_ORYSJ (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-11
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 145
           +D+TAFEKQS+LFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 108 EDDTAFEKQSSLFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLL 167

[Close]
BLAST of MELO3C035076.2 vs. Swiss-Prot
Match: sp|Q9FKE9|RHD32_ARATH (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10
Identity = 58/166 (34.94%), Postives = 66/166 (39.76%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLL----------- 147
           +D+T FEKQSALFA+         MW HDI REQ ANKPLLKTV Q +L           
Sbjct: 108 EDDTTFEKQSALFAIAVADIVLINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLL 167

Query: 148 -----------ENLEPVLRENVQK------------------------------------ 178
                      E LE  LRE++QK                                    
Sbjct: 168 FVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNTPLNEFFNVMIVALSSYEEKEKQ 227

[Close]
BLAST of MELO3C035076.2 vs. TrEMBL
Match: tr|A0A2I0K194|A0A2I0K194_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_017325 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.0e-15
Identity = 66/147 (44.90%), Postives = 71/147 (48.30%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQ-------------- 147
           +D+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV Q              
Sbjct: 108 EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM 167

Query: 148 --------TLLENLEPVLRENVQKV---------------------ANLRQRFFHSIALG 178
                   T LENLEPVLRE+VQK+                     ANLRQRFFHSIA G
Sbjct: 168 FVIRDKTRTPLENLEPVLREDVQKIWDSVPKPEAHKETPLSEFFNAANLRQRFFHSIAPG 227

[Close]
BLAST of MELO3C035076.2 vs. TrEMBL
Match: tr|A0A0E0MYD0|A0A0E0MYD0_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 65/151 (43.05%), Postives = 71/151 (47.02%), Query Frame = 0 

Query: 81  SSSLTFEKDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLLENLE 140
           SS     KD+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV QT LENLE
Sbjct: 47  SSGHRLPKDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQTPLENLE 106

Query: 141 PVLRENVQK----------------------------------------VANLRQRFFHS 178
           P+LRE++QK                                        VA+LR RF  S
Sbjct: 107 PILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQS 166

[Close]
BLAST of MELO3C035076.2 vs. TrEMBL
Match: tr|A0A0D9YAS9|A0A0D9YAS9_9ORYZ (Uncharacterized protein OS=Oryza glumipatula OX=40148 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 65/151 (43.05%), Postives = 71/151 (47.02%), Query Frame = 0 

Query: 81  SSSLTFEKDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLLENLE 140
           SS     KD+TAFEKQSALFAL         MW HDI REQ ANKPLLKTV QT LENLE
Sbjct: 47  SSGHRLPKDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQTPLENLE 106

Query: 141 PVLRENVQK----------------------------------------VANLRQRFFHS 178
           P+LRE++QK                                        VA+LR RF  S
Sbjct: 107 PILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQS 166

[Close]
BLAST of MELO3C035076.2 vs. TrEMBL
Match: tr|A0A251PJ40|A0A251PJ40_PRUPE (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Prunus persica OX=3760 GN=PRUPE_4G113800 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 61/144 (42.36%), Postives = 67/144 (46.53%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLLENLEPVLRENV 147
           +D+T FEKQSALFAL         MW HDI REQ ANKPLLKTV QT  E LEPVLRE++
Sbjct: 106 EDDTTFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQTPFEYLEPVLREDI 165

Query: 148 QK----------------------------------------VANLRQRFFHSIALGGLV 178
           QK                                        VA LRQRFFHSI+ GGL 
Sbjct: 166 QKIWDGVPKPQAHKSTPFSDFFSVEVVALSSYEEKEEKFKEEVAQLRQRFFHSISPGGLA 225

[Close]
BLAST of MELO3C035076.2 vs. TrEMBL
Match: tr|A0A251PJ37|A0A251PJ37_PRUPE (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Prunus persica OX=3760 GN=PRUPE_4G113800 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 61/144 (42.36%), Postives = 67/144 (46.53%), Query Frame = 0 

Query: 88  KDETAFEKQSALFALV--------MWYHDISREQVANKPLLKTVCQTLLENLEPVLRENV 147
           +D+T FEKQSALFAL         MW HDI REQ ANKPLLKTV QT  E LEPVLRE++
Sbjct: 106 EDDTTFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQTPFEYLEPVLREDI 165

Query: 148 QK----------------------------------------VANLRQRFFHSIALGGLV 178
           QK                                        VA LRQRFFHSI+ GGL 
Sbjct: 166 QKIWDGVPKPQAHKSTPFSDFFSVEVVALSSYEEKEEKFKEEVAQLRQRFFHSISPGGLA 225

The following BLAST results are available for this feature:
BLAST of MELO3C035076.2 vs. NCBI nr
Match NameE-valueIdentityDescription
OIW09003.12.8e-1750.00hypothetical protein TanjilG_05979 [Lupinus angustifolius][more]
PKI62324.17.5e-1544.90hypothetical protein CRG98_017325 [Punica granatum][more]
ONI11569.11.4e-1342.36hypothetical protein PRUPE_4G113800 [Prunus persica][more]
ONI11567.11.4e-1342.36hypothetical protein PRUPE_4G113800 [Prunus persica][more]
PLY88968.11.9e-1343.14hypothetical protein LSAT_8X90180 [Lactuca sativa][more]
BLAST of MELO3C035076.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G72960.11.1e-1251.76Root hair defective 3 GTP-binding protein (RHD3)[more]
AT3G13870.11.1e-1251.76Root hair defective 3 GTP-binding protein (RHD3)[more]
AT5G45160.15.6e-1234.94Root hair defective 3 GTP-binding protein (RHD3)[more]
BLAST of MELO3C035076.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SSN0|RHD31_ARATH2.0e-1151.76Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7... [more]
sp|P93042|RHD3_ARATH2.0e-1151.76Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1[more]
sp|Q0JLS6|RHD3_ORYSJ2.6e-1150.59Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P... [more]
sp|Q2QMH2|RHD31_ORYSJ5.9e-1149.43Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947... [more]
sp|Q9FKE9|RHD32_ARATH1.0e-1034.94Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4... [more]
BLAST of MELO3C035076.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I0K194|A0A2I0K194_PUNGR5.0e-1544.90Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_017325 PE=3 SV=1[more]
tr|A0A0E0MYD0|A0A0E0MYD0_ORYRU1.1e-1443.05Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1[more]
tr|A0A0D9YAS9|A0A0D9YAS9_9ORYZ1.1e-1443.05Uncharacterized protein OS=Oryza glumipatula OX=40148 PE=3 SV=1[more]
tr|A0A251PJ40|A0A251PJ40_PRUPE9.4e-1442.36Protein ROOT HAIR DEFECTIVE 3 homolog OS=Prunus persica OX=3760 GN=PRUPE_4G11380... [more]
tr|A0A251PJ37|A0A251PJ37_PRUPE9.4e-1442.36Protein ROOT HAIR DEFECTIVE 3 homolog OS=Prunus persica OX=3760 GN=PRUPE_4G11380... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008803RHD3/Sey1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035076.2.1MELO3C035076.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008803RHD3/Sey1PFAMPF05879RHD3coord: 89..128
e-value: 1.9E-8
score: 32.8
NoneNo IPR availablePANTHERPTHR11649:SF62PROTEIN ROOT HAIR DEFECTIVE 3coord: 88..130
NoneNo IPR availablePANTHERPTHR11649MSS1/TRME-RELATED GTP-BINDING PROTEINcoord: 88..130

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035076.2Cucumber (Gy14) v2cgybmedB386
MELO3C035076.2Cucumber (Gy14) v1cgymedB175
MELO3C035076.2Cucurbita maxima (Rimu)cmamedB637
MELO3C035076.2Cucurbita moschata (Rifu)cmomedB624
MELO3C035076.2Cucurbita pepo (Zucchini)cpemedB795
MELO3C035076.2Wild cucumber (PI 183967)cpimedB436
MELO3C035076.2Cucumber (Chinese Long) v2cumedB427
MELO3C035076.2Watermelon (Charleston Gray)medwcgB101
MELO3C035076.2Watermelon (97103) v1medwmB115
MELO3C035076.2Silver-seed gourdcarmedB0357
MELO3C035076.2Silver-seed gourdcarmedB0855
MELO3C035076.2Cucumber (Chinese Long) v3cucmedB440
MELO3C035076.2Watermelon (97103) v2medwmbB097
MELO3C035076.2Wax gourdmedwgoB138