MELO3C035040.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035040.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 2
Location	chr11 : 17834513 .. 17835082 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTCACGTATGTCATGTCTGGTTGGGAAGGTTCAACCAATGATTCTCGCATACTTCTAGAATGTTTCAAGAATCCTGAGAATAAATTTCTTATGCCTAAGCGAGGTAAATAATTATGTTTTTTTCATAACTTTAATTCCATATTTTACTTGATGATAATTTTTTATTTGCTTTATTATATGCAGATCAATACTATCTTGTCGATTCAAGATATTCAAATATGTCAGGATTTTTAGCACTATTTCAAGGTCAAAGATATCATTTACGAGATTTTAGAGAAAGAAGACATCGCCCTCGAGGTAGAGAAGAAGTGTTTAATTATCGACATTCTTCACTACGAAATGTCATTGAACGTTGAATGTCATTCTTCACTTCATGAAGGCTCAATTTCCTATTCTTAAGCAAATGCCTCCTTACCCGATCAAGACACAAAAATATATACTGATAGCATGTTGCACAGTTCTCAATTATATTAAATTGAATGATCGTCAAGATGATCTTTTCAATGACTTTAGCAATGAATTAATGATCATTGAAGATACACATAATATGTGGCCCAATTTGCA

mRNA sequence

ATGTTATTCACGTATGTCATGTCTGGTTGGGAAGGTTCAACCAATGATTCTCGCATACTTCTAGAATGTTTCAAGAATCCTGAGAATAAATTTCTTATGCCTAAGCGAGATCAATACTATCTTGTCGATTCAAGATATTCAAATATGTCAGGATTTTTAGCACTATTTCAAGGTCAAAGATATCATTTACGAGATTTTAGAGAAAGAAGACATCGCCCTCGAGGTAGAGAAGAAGTGTTTAATTATCGACATTCTTCACTACGAAATGTCATTGAACGTTGAATGTCATTCTTCACTTCATGAAGGCTCAATTTCCTATTCTTAAGCAAATGCCTCCTTACCCGATCAAGACACAAAAATATATACTGATAGCATGTTGCACAGTTCTCAATTATATTAAATTGAATGATCGTCAAGATGATCTTTTCAATGACTTTAGCAATGAATTAATGATCATTGAAGATACACATAATATGTGGCCCAATTTGCA

Coding sequence (CDS)

ATGTTATTCACGTATGTCATGTCTGGTTGGGAAGGTTCAACCAATGATTCTCGCATACTTCTAGAATGTTTCAAGAATCCTGAGAATAAATTTCTTATGCCTAAGCGAGATCAATACTATCTTGTCGATTCAAGATATTCAAATATGTCAGGATTTTTAGCACTATTTCAAGGTCAAAGATATCATTTACGAGATTTTAGAGAAAGAAGACATCGCCCTCGAGGTAGAGAAGAAGTGTTTAATTATCGACATTCTTCACTACGAAATGTCATTGAACGTTGA

Protein sequence

MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQRYHLRDFRERRHRPRGREEVFNYRHSSLRNVIER

Homology

[Close]

BLAST of MELO3C035040.2 vs. NCBI nr
Match: XP_016901856.1 (PREDICTED: uncharacterized protein LOC103496041 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 8.7e-37
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           MLFTYVMSGWEGSTND RIL EC +NPENKF MPKRDQYYLVDS YSNM  FLA FQG+R
Sbjct: 61  MLFTYVMSGWEGSTNDFRILEECIENPENKFPMPKRDQYYLVDSGYSNMPRFLAPFQGRR 120

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHLRDFRERRH PRGR EVFNYRHSSLRNVIER
Sbjct: 121 YHLRDFRERRHCPRGR-EVFNYRHSSLRNVIER 152

[Close]

BLAST of MELO3C035040.2 vs. NCBI nr
Match: XP_020272456.1 (putative nuclease HARBI1 [Asparagus officinalis])

HSP 1 Score: 132.1 bits (331), Expect = 9.7e-28
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           M FTYVMSGWEGS NDSRI LEC  NP+NKF MP   +YYLVDS Y+NMSGFL+ ++ +R
Sbjct: 74  MRFTYVMSGWEGSANDSRIFLECISNPQNKFPMPPTRKYYLVDSGYTNMSGFLSPYRRER 133

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHLR++R +   P+G  E+FNY HSSLRNVIER
Sbjct: 134 YHLREYRGQNIPPQGSRELFNYLHSSLRNVIER 166

[Close]

BLAST of MELO3C035040.2 vs. NCBI nr
Match: XP_020253243.1 (putative nuclease HARBI1 isoform X1 [Asparagus officinalis])

HSP 1 Score: 130.2 bits (326), Expect = 3.7e-27
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           M FT+VMSGWEGS NDSRI LEC  NP NKF MP   +YYLVDS Y+NM GFL+ ++G+R
Sbjct: 142 MRFTFVMSGWEGSANDSRIFLECISNPANKFPMPPARKYYLVDSGYTNMPGFLSPYRGER 201

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHL D+R +   P+G  E+FNY HSSLRNVIER
Sbjct: 202 YHLNDYRGQNLPPQGTRELFNYLHSSLRNVIER 234

[Close]

BLAST of MELO3C035040.2 vs. NCBI nr
Match: XP_020266015.1 (uncharacterized protein LOC109841457 [Asparagus officinalis])

HSP 1 Score: 130.2 bits (326), Expect = 3.7e-27
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           M FT+VMSGWEGS NDSRI LEC  NP NKF MP   +YYLVDS Y+NM GFL+ ++G+R
Sbjct: 248 MRFTFVMSGWEGSANDSRIFLECISNPANKFPMPPARKYYLVDSGYTNMPGFLSPYRGER 307

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHL D+R +   P+G  E+FNY HSSLRNVIER
Sbjct: 308 YHLNDYRGQNLPPQGTRELFNYLHSSLRNVIER 340

[Close]

BLAST of MELO3C035040.2 vs. NCBI nr
Match: XP_020266099.1 (protein ALP1-like [Asparagus officinalis])

HSP 1 Score: 130.2 bits (326), Expect = 3.7e-27
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           M FT+VMSGWEGS NDSRI LEC  NP NKF MP   +YYLVDS Y+NM GFL+ ++G+R
Sbjct: 142 MRFTFVMSGWEGSANDSRIFLECISNPANKFPMPPARKYYLVDSGYTNMPGFLSPYRGER 201

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHL D+R +   P+G  E+FNY HSSLRNVIER
Sbjct: 202 YHLNDYRGQNLPPQGTRELFNYLHSSLRNVIER 234

[Close]

BLAST of MELO3C035040.2 vs. TAIR10
Match: AT5G35695.1 (Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 83.6 bits (205), Expect = 7.2e-17
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 2   LFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQRY 61
           +F YV+SGWEGS +DSR+L +  +            ++YLVD  ++N   FLA F+G RY
Sbjct: 24  IFIYVLSGWEGSAHDSRVLSDALR------------KFYLVDCGFANRLNFLAPFRGVRY 83

Query: 62  HLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           HL++F  +R  P    E+FN RH SLRNVIER
Sbjct: 84  HLQEFAGQRRDPETPHELFNLRHVSLRNVIER 103

[Close]

BLAST of MELO3C035040.2 vs. TAIR10
Match: AT1G43722.1 (unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-13
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQ- 60
           MLFTY+ +G  GS  D+ + L+  +  +++F +P  ++YYLVDS Y N  G LA ++   
Sbjct: 216 MLFTYIWNGAPGSCYDTAV-LQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSR 275

Query: 61  ----RYHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
               RYH+  F     RPR + E+FN  H+SLR+VIER
Sbjct: 276 NRVVRYHMSQF-YYGPRPRNKHELFNQCHTSLRSVIER 311

[Close]

BLAST of MELO3C035040.2 vs. TAIR10
Match: AT5G41980.1 (Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-09
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 3   FTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQRYH 62
           F YV++GWEGS +D ++L        NK  +P + +YY+VD++Y N+ GF+A + G   +
Sbjct: 185 FNYVLAGWEGSASDQQVLNAALTR-RNKLQVP-QGKYYIVDNKYPNLPGFIAPYHGVSTN 244

Query: 63  LRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
            R+           +E+FN RH  L   I R
Sbjct: 245 SRE---------EAKEMFNERHKLLHRAIHR 264

[Close]

BLAST of MELO3C035040.2 vs. TAIR10
Match: AT5G28730.1 (unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 30/90 (33.33%), Postives = 44/90 (48.89%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           MLFTY   G  GST+D+R+L     + +  F +P   +YYLVDS Y+N  G+LA ++ + 
Sbjct: 150 MLFTYCFVGMAGSTHDARVLSAAISD-DPLFHVPPDSKYYLVDSGYANKRGYLAPYRREH 209

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNV 91
              +D            E  N +     NV
Sbjct: 210 REAQDIISNNFLTVNLFETHNIKDYDFDNV 238

[Close]

BLAST of MELO3C035040.2 vs. TAIR10
Match: AT4G10890.1 (unknown protein)

HSP 1 Score: 44.7 bits (104), Expect = 3.7e-05
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 14  TNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQRYHLRDFRERRHRP 73
           ++D+++L  C +N E+    P   +YYLV+S Y   +G+L   +   YHL  F  R   P
Sbjct: 71  SHDTKVLKYCARN-ESFSPHPSNRKYYLVNSVYPTTTGYLGPHRRILYHLGQF-GRGGPP 130

Query: 74  RGREEVFNYRHSSLRNVIER 94
              +E+FN +H  LR+VI+R
Sbjct: 131 VTVQELFNRKHLDLRSVIDR 148

[Close]

BLAST of MELO3C035040.2 vs. TrEMBL
Match: tr|A0A1S4E0U9|A0A1S4E0U9_CUCME (uncharacterized protein LOC103496041 OS=Cucumis melo OX=3656 GN=LOC103496041 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.8e-37
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           MLFTYVMSGWEGSTND RIL EC +NPENKF MPKRDQYYLVDS YSNM  FLA FQG+R
Sbjct: 61  MLFTYVMSGWEGSTNDFRILEECIENPENKFPMPKRDQYYLVDSGYSNMPRFLAPFQGRR 120

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHLRDFRERRH PRGR EVFNYRHSSLRNVIER
Sbjct: 121 YHLRDFRERRHCPRGR-EVFNYRHSSLRNVIER 152

[Close]

BLAST of MELO3C035040.2 vs. TrEMBL
Match: tr|A0A1R3GLP1|A0A1R3GLP1_COCAP (Harbinger transposase-derived nuclease OS=Corchorus capsularis OX=210143 GN=CCACVL1_25156 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.7e-26
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           M FTYVM+GWEG+ ND+R+ LEC  N +N F MP   +YYLVDS Y+NM GFL+ ++G+R
Sbjct: 123 MRFTYVMAGWEGTANDTRVFLECISNSQNNFPMPPIGKYYLVDSGYTNMPGFLSPYRGER 182

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHLRD+R R  +P G EE+FN+RHS LRN IER
Sbjct: 183 YHLRDYRGRGRQPTGPEEIFNHRHSFLRNCIER 215

[Close]

BLAST of MELO3C035040.2 vs. TrEMBL
Match: tr|A0A2P6SH66|A0A2P6SH66_ROSCH (Putative harbinger transposase-derived nuclease domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0354781 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-25
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           M+FT+V +GWEG+ NDSRI  +    PENKF  P    YY+VD+ Y+NM GFLA ++G+R
Sbjct: 189 MMFTFVYTGWEGTANDSRIFTDAVTRPENKFPFPNEGYYYVVDAGYTNMPGFLAPYRGER 248

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHLRD+R     PRG  E+FNYRHSSLRNVIER
Sbjct: 249 YHLRDYRGPHRTPRGPRELFNYRHSSLRNVIER 281

[Close]

BLAST of MELO3C035040.2 vs. TrEMBL
Match: tr|A0A0B2SJL0|A0A0B2SJL0_GLYSO (Putative nuclease HARBI1 (Fragment) OS=Glycine soja OX=3848 GN=glysoja_043532 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.1e-25
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           MLFT+V SGWEG+ NDSR+ L+   + EN F  P  DQ+YL+DS +SNM G+LA F+  +
Sbjct: 175 MLFTFVYSGWEGTANDSRVFLDAL-SLENNFPKPNGDQFYLIDSGFSNMPGYLAPFRRNK 234

Query: 61  YHLRDFRERRHRPRGREEVFNYRHSSLRNVIER 94
           YHL DFRE   RPRG+EE+FNYRHSSLRNVIER
Sbjct: 235 YHLHDFREGGGRPRGKEELFNYRHSSLRNVIER 266

[Close]

BLAST of MELO3C035040.2 vs. TrEMBL
Match: tr|A0A1U8I9H0|A0A1U8I9H0_GOSHI (putative nuclease HARBI1 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107894175 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.9e-22
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1   MLFTYVMSGWEGSTNDSRILLECFKNPENKFLMPKRDQYYLVDSRYSNMSGFLALFQGQR 60
           M FT+VM+GWEGS +D+RI L+  ++P+ KFL P   +YYLVDS Y  M G+L  ++GQR
Sbjct: 223 MCFTFVMAGWEGSVHDTRIFLDAIRDPKYKFLHPPNGKYYLVDSGYPQMKGYLGPYRGQR 282

Query: 61  YHLRDFRERRHRP-RGREEVFNYRHSSLRNVIER 94
           YHL DF  RR RP  G+EE+FN+ HSSLR+VIER
Sbjct: 283 YHLPDF--RRGRPVSGKEEIFNHSHSSLRSVIER 314

The following BLAST results are available for this feature:

BLAST of MELO3C035040.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901856.1	8.7e-37	87.10	PREDICTED: uncharacterized protein LOC103496041 [Cucumis melo]	[more]
XP_020272456.1	9.7e-28	66.67	putative nuclease HARBI1 [Asparagus officinalis]	[more]
XP_020253243.1	3.7e-27	65.59	putative nuclease HARBI1 isoform X1 [Asparagus officinalis]	[more]
XP_020266015.1	3.7e-27	65.59	uncharacterized protein LOC109841457 [Asparagus officinalis]	[more]
XP_020266099.1	3.7e-27	65.59	protein ALP1-like [Asparagus officinalis]	[more]

BLAST of MELO3C035040.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35695.1	7.2e-17	46.74	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT1G43722.1	3.7e-13	41.84	unknown protein	[more]
AT5G41980.1	1.9e-09	35.16	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT5G28730.1	1.5e-06	33.33	unknown protein	[more]
AT4G10890.1	3.7e-05	36.25	unknown protein	[more]

BLAST of MELO3C035040.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035040.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0U9\|A0A1S4E0U9_CUCME	5.8e-37	87.10	uncharacterized protein LOC103496041 OS=Cucumis melo OX=3656 GN=LOC103496041 PE=...	[more]
tr\|A0A1R3GLP1\|A0A1R3GLP1_COCAP	2.7e-26	61.29	Harbinger transposase-derived nuclease OS=Corchorus capsularis OX=210143 GN=CCAC...	[more]
tr\|A0A2P6SH66\|A0A2P6SH66_ROSCH	3.0e-25	60.22	Putative harbinger transposase-derived nuclease domain-containing protein OS=Ros...	[more]
tr\|A0A0B2SJL0\|A0A0B2SJL0_GLYSO	5.1e-25	63.44	Putative nuclease HARBI1 (Fragment) OS=Glycine soja OX=3848 GN=glysoja_043532 PE...	[more]
tr\|A0A1U8I9H0\|A0A1U8I9H0_GOSHI	6.9e-22	58.51	putative nuclease HARBI1 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC10789417...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027806	HARBI1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035040.2.1	MELO3C035040.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 2..93 e-value: 3.6E-7 score: 29.9
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..93
None	No IPR available	PANTHER	PTHR22930:SF88	SUBFAMILY NOT NAMED	coord: 1..93

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035040.2	Cucumber (Gy14) v1	cgymedB177
MELO3C035040.2	Cucurbita maxima (Rimu)	cmamedB586
MELO3C035040.2	Cucurbita moschata (Rifu)	cmomedB566
MELO3C035040.2	Cucurbita pepo (Zucchini)	cpemedB309
MELO3C035040.2	Wild cucumber (PI 183967)	cpimedB414
MELO3C035040.2	Cucumber (Chinese Long) v2	cumedB405
MELO3C035040.2	Bottle gourd (USVL1VR-Ls)	lsimedB061
MELO3C035040.2	Silver-seed gourd	carmedB0032