MELO3C035026.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035026.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	cytochrome P450 71A1-like
Location	chr11 : 16846335 .. 16847785 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACAACAAAAAAAATCTTGTAAGTGAGATATTTGACATGTTTCATGACCATTTCACTAGAGACAACCTCAAAGCAATCTTAATGGTTTCTTTTCTTGATGTCTCTAATATTCTTCTGATACTTGTTTTGGACTACATCGGTTTTTCTTTAAGACAAGAAGTTTGAACCATTTTGAGTTATTCCATAAAATCAATTGACCGAATTTGGTTAAATCAACTTTGCCTTTTTCTTCTTCTTTACTCATATTGCTCACACTAATATCAACAATAATATAGCGATAAGGATAAGGATATGGAAAGGGCATATGTATGTTGACTCTATGGCACTTAATTATCACTTTTTTTTTCTTTCGTAGCTTTCTTCATACTTAGTTCTTTCCATTGTCTTCTATTCTTTTATTACTCTTGGCCTATTTGTGAACATTATCTTTGAATATATATATATTTCCACAGAGTATTGTCTTTGTTTCTATCCTTGTTGGGTTTTATTGAGTTTCAAGTGGACAATCCTAACATAGCCTTAGGTAAAGTGAGGAATTGAACTTAGATAAAGCCAGGCCTCCACCATAATGGGAATCACCTTATTTTGTTTTAATATATACATATCTATACACACATTTGAGAAGGAAATGCTTTACACACACACAAGAGACAATGAGTGCCTATGCAAGTTCTGCTCTCCTTGACTATTCTTGTGACTATTTCATGATCAAGTCAATTCCATCATGTTCTAAAGAGATATTGATACATTTGAAGAGTTTTATATGTTTTAGAAGTGCATCTTTATAGGTTCCAAATGCAATTTGAGACAACTCTTACTGGCAAGTTATAAGAAGCCAAACCTTTATACATAATGTTTGGAGAAAAATTGTTCAATAAATAGCGGGTTTATTTGAACAGGTACAACCACGTAATAATTTATTAGACTACCAATAATAAGAAGTAATTTTCCATTTTTAAATGATGAACATCTGCATCTTTTTTTAGAGCCACAGACGAGTATATGAAAGGAGCATGGGAGTTCGTAGAGAAAGTAAAGAAGGATGCAACATATGTGGATTTGATTATGTGCCCTTGCAAGGATTGTAGAAACATGAATCATCAATCCTTTGAATTACTTATGAGCATTTAGTAATTAAGGGAATGGACCCAACATATATTTGGTACCATTATGGGAGGAAGTTTGTGTAAGGGAAGAAATTGAGGATGTAGATATGTTTGATGTATTTAACATGTATCAATCTACATATAAAAGAGAAGAAGTAAATGTTGAGCCTACTTTTTCAAGTACTGATAGTGAACTTCATCAAAAAAATGAAAAATGCAAAAGCTTCCTTATATCCCAGTTGTACAAAATTCACAAAGATGTCAGCTACGGTGGCCTTGTATAAACATAAAGCTTTGAGTGGTTGGTCTGATAAAAGTTGTAGTGACTTATTGGAATTA

mRNA sequence

ATGGCCGACAACAAAAAAAATCTTGTAAGTGAGATATTTGACATGTTTCATGACCATTTCACTAGAGACAACCTCAAAGCAATCTTAATGGTTTCTTTTCTTGATGTCTCTAATATTCTTCTGATACTTGTTTTGGACTACATCGAAGTGCATCTTTATAGGTTCCAAATGCAATTTGAGACAACTCTTACTGGCAAAGCCACAGACGAGTATATGAAAGGAGCATGGGAGTTCGTAGAGAAAGTAAAGAAGGATGCAACATATGTGGATTTGATTATGTGCCCTTGCAAGGATTGTAGAAACATGAATCATCAATCCTTTGAATTACTTATGAGCATTTAGTAATTAAGGGAATGGACCCAACATATATTTGGTACCATTATGGGAGGAAGTTTGTGTAAGGGAAGAAATTGAGGATGTAGATATGTTTGATGTATTTAACATGTATCAATCTACATATAAAAGAGAAGAAGTAAATGTTGAGCCTACTTTTTCAAGTACTGATAGTGAACTTCATCAAAAAAATGAAAAATGCAAAAGCTTCCTTATATCCCAGTTGTACAAAATTCACAAAGATGTCAGCTACGGTGGCCTTGTATAAACATAAAGCTTTGAGTGGTTGGTCTGATAAAAGTTGTAGTGACTTATTGGAATTA

Coding sequence (CDS)

ATGGCCGACAACAAAAAAAATCTTGTAAGTGAGATATTTGACATGTTTCATGACCATTTCACTAGAGACAACCTCAAAGCAATCTTAATGGTTTCTTTTCTTGATGTCTCTAATATTCTTCTGATACTTGTTTTGGACTACATCGAAGTGCATCTTTATAGGTTCCAAATGCAATTTGAGACAACTCTTACTGGCAAAGCCACAGACGAGTATATGAAAGGAGCATGGGAGTTCGTAGAGAAAGTAAAGAAGGATGCAACATATGTGGATTTGATTATGTGCCCTTGCAAGGATTGTAGAAACATGAATCATCAATCCTTTGAATTACTTATGAGCATTTAG

Protein sequence

MADNKKNLVSEIFDMFHDHFTRDNLKAILMVSFLDVSNILLILVLDYIEVHLYRFQMQFETTLTGKATDEYMKGAWEFVEKVKKDATYVDLIMCPCKDCRNMNHQSFELLMSI

Homology

[Close]

BLAST of MELO3C035026.2 vs. NCBI nr
Match: KGN47253.1 (hypothetical protein Csa_6G237080 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 37/45 (82.22%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 66  KATDEYMKGAWEFVEKVKKDATYVDLIMCPCKDCRNMNHQSFELL 111
           +ATDEYMKGAWEF+EKVKKD TYVDLIMCPCKDCR+M+HQSF+++
Sbjct: 16  RATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIV 60

[Close]

BLAST of MELO3C035026.2 vs. TrEMBL
Match: tr|A0A0A0KCH8|A0A0A0KCH8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237080 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 37/45 (82.22%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 66  KATDEYMKGAWEFVEKVKKDATYVDLIMCPCKDCRNMNHQSFELL 111
           +ATDEYMKGAWEF+EKVKKD TYVDLIMCPCKDCR+M+HQSF+++
Sbjct: 16  RATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIV 60

The following BLAST results are available for this feature:

BLAST of MELO3C035026.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47253.1	2.3e-15	82.22	hypothetical protein Csa_6G237080 [Cucumis sativus]	[more]

BLAST of MELO3C035026.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035026.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035026.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCH8\|A0A0A0KCH8_CUCSA	1.5e-15	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237080 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029480	Transpos_assoc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035026.2.1	MELO3C035026.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 66..106 e-value: 2.4E-7 score: 31.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035026.2	Cucumber (Gy14) v2	cgybmedB390
MELO3C035026.2	Cucumber (Gy14) v1	cgymedB176
MELO3C035026.2	Cucumber (Gy14) v1	cgymedB177
MELO3C035026.2	Cucurbita maxima (Rimu)	cmamedB586
MELO3C035026.2	Cucurbita maxima (Rimu)	cmamedB623
MELO3C035026.2	Cucurbita moschata (Rifu)	cmomedB566
MELO3C035026.2	Cucurbita moschata (Rifu)	cmomedB610
MELO3C035026.2	Cucurbita pepo (Zucchini)	cpemedB309
MELO3C035026.2	Cucurbita pepo (Zucchini)	cpemedB808
MELO3C035026.2	Wild cucumber (PI 183967)	cpimedB414
MELO3C035026.2	Wild cucumber (PI 183967)	cpimedB440
MELO3C035026.2	Cucumber (Chinese Long) v2	cumedB405
MELO3C035026.2	Cucumber (Chinese Long) v2	cumedB431
MELO3C035026.2	Bottle gourd (USVL1VR-Ls)	lsimedB061
MELO3C035026.2	Watermelon (Charleston Gray)	medwcgB105
MELO3C035026.2	Watermelon (97103) v1	medwmB123
MELO3C035026.2	Silver-seed gourd	carmedB0032
MELO3C035026.2	Silver-seed gourd	carmedB0349
MELO3C035026.2	Cucumber (Chinese Long) v3	cucmedB444
MELO3C035026.2	Watermelon (97103) v2	medwmbB104
MELO3C035026.2	Wax gourd	medwgoB121