MELO3C034995.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C034995.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionARM repeat superfamily protein
Locationchr11 : 14029777 .. 14032112 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAATGTCATTCTAAACTCATAGTTTTGGAGCTTTCTCAGGGTGGCAGGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACACATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGGGTGTGCAGGTTCCACCAAGGTAGATAAAATAGCTTACATATTTTTTTGTTTTATTAGGAAAAAAGAAAATTTTCATTTTGTTATGAATTTATATCTCTTGTTGAAATGTTTTTTTTTGCTGTGAGAGGGAAAAGAAACCCTCTTGGATGCACTTGGTGCTATTTCAACTGCTTGCCACAAATTAATTTCTACTGTAGATCTTGCCATGCCCAATGCCATTGTAAATCTGGTATCTTCCTCTTGCTCCAAGAAAGCAAAGAAATTTCGAAGCAATAGATGCAAGGGGATAGACTTTAGTTTTGGTATACAACACATGTTTTTGGTTATATAACATAGCTATTATTGTTGATTTTGGAATAGGCCACACACAGGAACTTTTAGTTGGTTATATTTGGATTGGAATTCTGTAATTGTAGATGACATTGTTGAGAAGAATGAAATTATTGTTGGTTTACTGGTTTATTTGTCATTTTATTGTTGTGTAACTACTGGTTGGAAAGGAATGTACTTAATGCAGGACACAGAAAATAGAAAATTTGTATATTTAATATATTAATAAACAATATACATAACGTTAAATATATGACGAATTTTTTGTGTCAACTATACAATTTTACTTGACGTGCAAATAGTGTCAAGTATGCGAACTTACTTGAATCAAATATAATATTTTACTTGATGGTTTTTTAGTATCAAATATACAATTTTACTTGACATGTAAATAGTGTCAAGTATGCGATCTTGACGGTAGATTACTTGATGTCAATAAAATGTCAAGTAAAGGTATATTCGACGATTTATTAGTGTCAAGTAAGGGTATACTTGACGTGTTTTGAATGTCAAGTAAAGGTATACTTGACGGTTTTTCAGTGTCAAGTAATTTGACTATACTTGATAGTCGATTACTTGACGCTTTTAAAAACGTCAAGTAAAGGTTTACTTAACATTGTATTAACGTCAAGTAATCCAATTTCTGTAATAGTGATGTATAATATGAAACTCATACATTATAATGAAAATAAGAAAATGGAAAGTAAGAGATATAAGCCGAGTCGTAGAATGCCTAAGCATCCCTTGGCTCTTTAACAAGTTATGAGGAAGAAGATTGTGGTTTCTCTCTCTAATCTTATTCTGAGCTCTCACTTACAAGATTAACTAGAGAAGAGATGGAATATTCTTTACATAAGGCAGAAAAGTTAGTCCTTTCCACTGGCTTCGATCGAGCTCTCTAGGTCTTGGTCCATTCAGACCCTCTTTTCTTGGTAAAGATGGAGACTTTATATAGGCTACTTTAGGCAGAAAACTTATATTCCTCTGCACACGTCAATGCCAAACGCAGCATTGTCAAGTCACATCAACTCAACTACCATTTTTGTCTTCTAGTGAATCTCTTTGCGTGATGATGTGAAATCTTGCCTAGTGATGTTAATCGCCAAGCAATCTTCCAATCGCATAAGCTTTTGCATGCATCCTTCATTTTGCAATTCACTATATCTTTTTTCTTAATTATCCTGCAATAAAAACAATGAATGACATGGAAAATAAGGCATGAAGATTTATGTAAGTTATGTTCCCTTATCTTTATAAATTTACGATGAAAGCTACGTGTTTTCAGACTTTATCCTACGTTATGACTCCATTGTTCTACCTAAAAGGTTATAATATCATGTATTTCTACAAGCTATTAGTCCCTGGTAGGGACAAAGGAAAGGATGTCGAGAATACAAACCTCCAAGAAGAAAAAGGAGGGAATGAAACAACATGAACTCGCAACATTAGGTGAACAACTAGAGAAATTGTCAGCCAAATTTAAGGCTATAGAAGAGCAAGAGGTGGACCACCTCGAGGTCGTGGCAACAGAGCTTAAGGAAGAGCTAAATCAAATAAGCCCTTTTGGAACTAAGGTTATCACCTGAAAACCAGAGCTTAAGCGCTGCCACACCATAGAAAAGGAAGACAAAAGTTGGACCATCTAAATCTGAGGAGGCCTAACAAGGCGGTCGGGGGTTATTCCTCTATAATGAAGTTCTTCCTAACTTTATCTACAGACTAATTAAGGCATTTCGGTGGAGTAAGTTTTTCCTACAAGAAACAACAGTCAGATTGGATGTGGTAAACAAAGTTTACGCTGCAAAGTACTATCCAATTGACTTCTATGTGATGGTTGAAGGGCAAAGGATTTATTTCAATGTTAAGGCGTAA

mRNA sequence

ATGTCAAAATGTCATTCTAAACTCATAGTTTTGGAGCTTTCTCAGGGTGGCAGGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACACATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGGGTGTGCAGGTTCCACCAAGGGAAAAGAAACCCTCTTGGATGCACTTGGTGCTATTTCAACTGCTTGCCACAAATTAATTTCTACTGTAGATCTTGCCATGCCCAATGCCATTGTAAATCTGGTATCTTCCTCTTGCTCCAAGAAAGCAAAGAAATTTCGAAGCAATAGATGCAAGGGGATAGACTTTAGTTTTGGTATACAACACATGCCACACACAGGAACTTTTAGTTGGTTATATTTGGATTGGAATTCTGTAATTGTAGATGACATTGTTGAGAAGAATGAAATTATTGTTGGTTTACTGTGTCAAGTATGCGATCTTGACGGTAGATTACTTGATGTCAATAAAATGTCAAGTAAAGGGACAAAGGAAAGGATGTCGAGAATACAAACCTCCAAGAAGAAAAAGGAGGGAATGAAACAACATGAACTCGCAACATTAGGTGAACAACTAGAGAAATTGTCAGCCAAATTTAAGGCTATAGAAGAGCAAGAGGTGGACCACCTCGAGGTCGTGGCAACAGAGCTTAAGGAAGAGCTAAATCAAATAAGCCCTTTTGGAACTAAGGCATTTCGGTGGAGTAAGTTTTTCCTACAAGAAACAACAGTCAGATTGGATGTGGTAAACAAAGTTTACGCTGCAAAGTACTATCCAATTGACTTCTATGTGATGGTTGAAGGGCAAAGGATTTATTTCAATGTTAAGGCGTAA

Coding sequence (CDS)

ATGTCAAAATGTCATTCTAAACTCATAGTTTTGGAGCTTTCTCAGGGTGGCAGGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACACATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGGGTGTGCAGGTTCCACCAAGGGAAAAGAAACCCTCTTGGATGCACTTGGTGCTATTTCAACTGCTTGCCACAAATTAATTTCTACTGTAGATCTTGCCATGCCCAATGCCATTGTAAATCTGGTATCTTCCTCTTGCTCCAAGAAAGCAAAGAAATTTCGAAGCAATAGATGCAAGGGGATAGACTTTAGTTTTGGTATACAACACATGCCACACACAGGAACTTTTAGTTGGTTATATTTGGATTGGAATTCTGTAATTGTAGATGACATTGTTGAGAAGAATGAAATTATTGTTGGTTTACTGTGTCAAGTATGCGATCTTGACGGTAGATTACTTGATGTCAATAAAATGTCAAGTAAAGGGACAAAGGAAAGGATGTCGAGAATACAAACCTCCAAGAAGAAAAAGGAGGGAATGAAACAACATGAACTCGCAACATTAGGTGAACAACTAGAGAAATTGTCAGCCAAATTTAAGGCTATAGAAGAGCAAGAGGTGGACCACCTCGAGGTCGTGGCAACAGAGCTTAAGGAAGAGCTAAATCAAATAAGCCCTTTTGGAACTAAGGCATTTCGGTGGAGTAAGTTTTTCCTACAAGAAACAACAGTCAGATTGGATGTGGTAAACAAAGTTTACGCTGCAAAGTACTATCCAATTGACTTCTATGTGATGGTTGAAGGGCAAAGGATTTATTTCAATGTTAAGGCGTAA

Protein sequence

MSKCHSKLIVLELSQGGRRVLEQTSSAASPNTCYRCGEQGHFARGCAGSTKGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFRSNRCKGIDFSFGIQHMPHTGTFSWLYLDWNSVIVDDIVEKNEIIVGLLCQVCDLDGRLLDVNKMSSKGTKERMSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISPFGTKAFRWSKFFLQETTVRLDVVNKVYAAKYYPIDFYVMVEGQRIYFNVKA
BLAST of MELO3C034995.2 vs. NCBI nr
Match: XP_008449627.1 (PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 8.3e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1539 EGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1586

BLAST of MELO3C034995.2 vs. NCBI nr
Match: XP_008449628.1 (PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 8.3e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1523 QGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1570

BLAST of MELO3C034995.2 vs. NCBI nr
Match: XP_011657604.1 (PREDICTED: proteasome-associated protein ECM29 homolog isoform X3 [Cucumis sativus] >KGN48077.1 hypothetical protein Csa_6G429070 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D A+PNAIVNLVSSSCSKKAKKFR
Sbjct: 1542 EGKETILDALGAISTACHKLISTADPALPNAIVNLVSSSCSKKAKKFR 1589

BLAST of MELO3C034995.2 vs. NCBI nr
Match: XP_011657602.1 (PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D A+PNAIVNLVSSSCSKKAKKFR
Sbjct: 1545 EGKETILDALGAISTACHKLISTADPALPNAIVNLVSSSCSKKAKKFR 1592

BLAST of MELO3C034995.2 vs. NCBI nr
Match: XP_011657603.1 (PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D A+PNAIVNLVSSSCSKKAKKFR
Sbjct: 1545 EGKETILDALGAISTACHKLISTADPALPNAIVNLVSSSCSKKAKKFR 1592

BLAST of MELO3C034995.2 vs. TAIR10
Match: AT2G26780.1 (ARM repeat superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.8e-08
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFRSN 101
            +GK+ LLDALGA+S ACH+ I+  D   P  I++L+ S+C KK KK+R +
Sbjct: 1554 EGKDALLDALGALSVACHEAITKEDPTTPTTILSLICSACKKKLKKYRES 1603

BLAST of MELO3C034995.2 vs. TrEMBL
Match: tr|A0A1S3BMF7|A0A1S3BMF7_CUCME (proteasome-associated protein ECM29 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491455 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1539 EGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1586

BLAST of MELO3C034995.2 vs. TrEMBL
Match: tr|A0A1S3BN41|A0A1S3BN41_CUCME (proteasome-associated protein ECM29 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491455 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1523 QGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1570

BLAST of MELO3C034995.2 vs. TrEMBL
Match: tr|A0A0A0KI82|A0A0A0KI82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429070 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D A+PNAIVNLVSSSCSKKAKKFR
Sbjct: 1542 EGKETILDALGAISTACHKLISTADPALPNAIVNLVSSSCSKKAKKFR 1589

BLAST of MELO3C034995.2 vs. TrEMBL
Match: tr|A0A1S4E5G6|A0A1S4E5G6_CUCME (uncharacterized protein LOC103503336 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503336 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-11
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 53  KETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKF 98
           KET+LDALGAISTAC KL+ST D AMPNAIVNLVSSSCSKKAKKF
Sbjct: 212 KETILDALGAISTACLKLVSTADPAMPNAIVNLVSSSCSKKAKKF 256

BLAST of MELO3C034995.2 vs. TrEMBL
Match: tr|A0A1S4E5G4|A0A1S4E5G4_CUCME (uncharacterized protein LOC103503336 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503336 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-11
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 53  KETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKF 98
           KET+LDALGAISTAC KL+ST D AMPNAIVNLVSSSCSKKAKKF
Sbjct: 153 KETILDALGAISTACLKLVSTADPAMPNAIVNLVSSSCSKKAKKF 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008449627.18.3e-1491.67PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis melo][more]
XP_008449628.18.3e-1491.67PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis melo][more]
XP_011657604.11.8e-1389.58PREDICTED: proteasome-associated protein ECM29 homolog isoform X3 [Cucumis sativ... [more]
XP_011657602.11.8e-1389.58PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis sativ... [more]
XP_011657603.11.8e-1389.58PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis sativ... [more]
Match NameE-valueIdentityDescription
AT2G26780.14.8e-0850.00ARM repeat superfamily protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BMF7|A0A1S3BMF7_CUCME5.5e-1491.67proteasome-associated protein ECM29 homolog isoform X1 OS=Cucumis melo OX=3656 G... [more]
tr|A0A1S3BN41|A0A1S3BN41_CUCME5.5e-1491.67proteasome-associated protein ECM29 homolog isoform X2 OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0KI82|A0A0A0KI82_CUCSA1.2e-1389.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429070 PE=4 SV=1[more]
tr|A0A1S4E5G6|A0A1S4E5G6_CUCME3.3e-1188.89uncharacterized protein LOC103503336 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E5G4|A0A1S4E5G4_CUCME3.3e-1188.89uncharacterized protein LOC103503336 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043248 proteasome assembly
cellular_component GO:0016020 membrane
molecular_function GO:0032947 protein complex scaffold
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034995.2.1MELO3C034995.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 189..224
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 10..56
e-value: 1.3E-7
score: 33.4
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 32..48
e-value: 0.0075
score: 24.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 31..46
e-value: 2.4E-4
score: 20.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 33..46
score: 10.394
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 12..54

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034995.2Cucumber (Gy14) v2cgybmedB368
MELO3C034995.2Cucumber (Gy14) v2cgybmedB451
MELO3C034995.2Cucumber (Gy14) v1cgymedB116
MELO3C034995.2Cucumber (Gy14) v1cgymedB177
MELO3C034995.2Cucurbita maxima (Rimu)cmamedB524
MELO3C034995.2Cucurbita maxima (Rimu)cmamedB574
MELO3C034995.2Cucurbita maxima (Rimu)cmamedB612
MELO3C034995.2Cucurbita moschata (Rifu)cmomedB513
MELO3C034995.2Cucurbita moschata (Rifu)cmomedB558
MELO3C034995.2Cucurbita moschata (Rifu)cmomedB601
MELO3C034995.2Cucurbita pepo (Zucchini)cpemedB302
MELO3C034995.2Cucurbita pepo (Zucchini)cpemedB797
MELO3C034995.2Wild cucumber (PI 183967)cpimedB414
MELO3C034995.2Wild cucumber (PI 183967)cpimedB506
MELO3C034995.2Cucumber (Chinese Long) v2cumedB405
MELO3C034995.2Cucumber (Chinese Long) v2cumedB496
MELO3C034995.2Melon (DHL92) v3.6.1medmedB039
MELO3C034995.2Bottle gourd (USVL1VR-Ls)lsimedB054
MELO3C034995.2Bottle gourd (USVL1VR-Ls)lsimedB094
MELO3C034995.2Watermelon (Charleston Gray)medwcgB094
MELO3C034995.2Watermelon (Charleston Gray)medwcgB104
MELO3C034995.2Watermelon (97103) v1medwmB109
MELO3C034995.2Silver-seed gourdcarmedB0202
MELO3C034995.2Silver-seed gourdcarmedB0356
MELO3C034995.2Silver-seed gourdcarmedB0811
MELO3C034995.2Cucumber (Chinese Long) v3cucmedB421
MELO3C034995.2Cucumber (Chinese Long) v3cucmedB521
MELO3C034995.2Watermelon (97103) v2medwmbB090
MELO3C034995.2Watermelon (97103) v2medwmbB103
MELO3C034995.2Wax gourdmedwgoB108
MELO3C034995.2Wax gourdmedwgoB128