MELO3C034982.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034982.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr11 : 12965855 .. 12966073 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAAACAAGAGGGGCATTGGAAGCCACTCAATATGTGGACGTTGAAGAGATGGTTGCGATTTTGTTGCATATTGTAGTACACGATGTTAAGAATAGGGTAGCTCGACGACATTTTGCAAGATCTGATGAAATAGTGTTAAGACACTCTTCAACGCTGTTCTTAATGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGA

mRNA sequence

ATGTTAAAAACAAGAGGGGCATTGGAAGCCACTCAATATGTGGACGTTGAAGAGATGGTTGCGATTTTGTTGCATATTGTAGTACACGATGTTAAGAATAGGGTAGCTCGACGACATTTTGCAAGATCTGATGAAATAGTGTTAAGACACTCTTCAACGCTGTTCTTAATGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGA

Coding sequence (CDS)

ATGTTAAAAACAAGAGGGGCATTGGAAGCCACTCAATATGTGGACGTTGAAGAGATGGTTGCGATTTTGTTGCATATTGTAGTACACGATGTTAAGAATAGGGTAGCTCGACGACATTTTGCAAGATCTGATGAAATAGTGTTAAGACACTCTTCAACGCTGTTCTTAATGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGA

Protein sequence

MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRHSSTLFLMQFLDSMKSFLSNLIQ

Homology

[Close]

BLAST of MELO3C034982.2 vs. NCBI nr
Match: XP_008463037.1 (PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-14
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRH 51
          ML+TRG LEATQYVDVEEMVAILLHIV HDVKN+VARR+FARSDE V RH
Sbjct: 1  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRH 50

[Close]

BLAST of MELO3C034982.2 vs. NCBI nr
Match: XP_008452358.1 (PREDICTED: uncharacterized protein LOC103493418 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRHSSTLF 56
          ML+TRG LE TQYVDVEEMVAI  HIV HDVKNRVARRHFARS E + RH + +F
Sbjct: 1  MLRTRGGLETTQYVDVEEMVAIFFHIVAHDVKNRVARRHFARSGETMSRHFNAVF 55

[Close]

BLAST of MELO3C034982.2 vs. NCBI nr
Match: XP_008462938.1 (PREDICTED: uncharacterized protein LOC103501200 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRH 51
          ML+TRG LEATQYVDVEE VAI L+IV +DVKNRVARRHFARS EIV RH
Sbjct: 1  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSEIVSRH 50

[Close]

BLAST of MELO3C034982.2 vs. NCBI nr
Match: XP_011650149.1 (PREDICTED: uncharacterized protein LOC105434737 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 3   KTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRH 51
           K +G LEATQ VD EEMVAI LHIV HDVKNRVAR+HFARS E V RH
Sbjct: 53  KNKGGLEATQCVDFEEMVAIFLHIVAHDVKNRVARQHFARSGETVSRH 100

[Close]

BLAST of MELO3C034982.2 vs. NCBI nr
Match: XP_008444024.1 (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRHSSTLFL 57
          +L+TR  LE+T++VDVEEMVA+ LH++ HDVKNR  +R F RS EIV +H + + +
Sbjct: 12 LLRTRADLESTEHVDVEEMVALFLHVLAHDVKNRQIQREFVRSSEIVPQHFNMVLM 67

[Close]

BLAST of MELO3C034982.2 vs. TrEMBL
Match: tr|A0A1S3CJV8|A0A1S3CJV8_CUCME (uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRH 51
          ML+TRG LEATQYVDVEEMVAILLHIV HDVKN+VARR+FARSDE V RH
Sbjct: 1  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRH 50

[Close]

BLAST of MELO3C034982.2 vs. TrEMBL
Match: tr|A0A1S3BTL5|A0A1S3BTL5_CUCME (uncharacterized protein LOC103493418 OS=Cucumis melo OX=3656 GN=LOC103493418 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRHSSTLF 56
          ML+TRG LE TQYVDVEEMVAI  HIV HDVKNRVARRHFARS E + RH + +F
Sbjct: 1  MLRTRGGLETTQYVDVEEMVAIFFHIVAHDVKNRVARRHFARSGETMSRHFNAVF 55

[Close]

BLAST of MELO3C034982.2 vs. TrEMBL
Match: tr|A0A1S3CI20|A0A1S3CI20_CUCME (uncharacterized protein LOC103501200 OS=Cucumis melo OX=3656 GN=LOC103501200 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRH 51
          ML+TRG LEATQYVDVEE VAI L+IV +DVKNRVARRHFARS EIV RH
Sbjct: 1  MLRTRGGLEATQYVDVEETVAIFLYIVAYDVKNRVARRHFARSSEIVSRH 50

[Close]

BLAST of MELO3C034982.2 vs. TrEMBL
Match: tr|A0A1S3B9E4|A0A1S3B9E4_CUCME (uncharacterized protein LOC103487473 OS=Cucumis melo OX=3656 GN=LOC103487473 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-08
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLRHSSTLFL 57
          +L+TR  LE+T++VDVEEMVA+ LH++ HDVKNR  +R F RS EIV +H + + +
Sbjct: 12 LLRTRADLESTEHVDVEEMVALFLHVLAHDVKNRQIQREFVRSSEIVPQHFNMVLM 67

[Close]

BLAST of MELO3C034982.2 vs. TrEMBL
Match: tr|A0A2N9H5S7|A0A2N9H5S7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34871 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1  MLKTRGALEATQYVDVEEMVAILLHIVVHDVKNRVARRHFARSDEIVLR 50
          MLKT G L AT+ ++VEEMVA+ LHIV HDVKNRV +R FARS E + R
Sbjct: 26 MLKTTGRLSATRNMNVEEMVAMFLHIVAHDVKNRVIKRQFARSGETISR 74

The following BLAST results are available for this feature:

BLAST of MELO3C034982.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463037.1	3.6e-14	86.00	PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo]	[more]
XP_008452358.1	3.1e-13	74.55	PREDICTED: uncharacterized protein LOC103493418 [Cucumis melo]	[more]
XP_008462938.1	1.5e-12	82.00	PREDICTED: uncharacterized protein LOC103501200 [Cucumis melo]	[more]
XP_011650149.1	2.4e-10	77.08	PREDICTED: uncharacterized protein LOC105434737 [Cucumis sativus]	[more]
XP_008444024.1	1.1e-07	53.57	PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo]	[more]

BLAST of MELO3C034982.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034982.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034982.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJV8\|A0A1S3CJV8_CUCME	2.4e-14	86.00	uncharacterized protein LOC103501276 OS=Cucumis melo OX=3656 GN=LOC103501276 PE=...	[more]
tr\|A0A1S3BTL5\|A0A1S3BTL5_CUCME	2.0e-13	74.55	uncharacterized protein LOC103493418 OS=Cucumis melo OX=3656 GN=LOC103493418 PE=...	[more]
tr\|A0A1S3CI20\|A0A1S3CI20_CUCME	1.0e-12	82.00	uncharacterized protein LOC103501200 OS=Cucumis melo OX=3656 GN=LOC103501200 PE=...	[more]
tr\|A0A1S3B9E4\|A0A1S3B9E4_CUCME	7.5e-08	53.57	uncharacterized protein LOC103487473 OS=Cucumis melo OX=3656 GN=LOC103487473 PE=...	[more]
tr\|A0A2N9H5S7\|A0A2N9H5S7_FAGSY	2.2e-07	65.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34871 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034982.2.1	MELO3C034982.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034982.2	Cucumber (Gy14) v2	cgybmedB368
MELO3C034982.2	Cucumber (Gy14) v1	cgymedB177
MELO3C034982.2	Cucurbita maxima (Rimu)	cmamedB524
MELO3C034982.2	Cucurbita maxima (Rimu)	cmamedB574
MELO3C034982.2	Cucurbita maxima (Rimu)	cmamedB612
MELO3C034982.2	Cucurbita moschata (Rifu)	cmomedB513
MELO3C034982.2	Cucurbita moschata (Rifu)	cmomedB558
MELO3C034982.2	Cucurbita moschata (Rifu)	cmomedB601
MELO3C034982.2	Cucurbita pepo (Zucchini)	cpemedB302
MELO3C034982.2	Cucurbita pepo (Zucchini)	cpemedB797
MELO3C034982.2	Wild cucumber (PI 183967)	cpimedB414
MELO3C034982.2	Wild cucumber (PI 183967)	cpimedB506
MELO3C034982.2	Cucumber (Chinese Long) v2	cumedB405
MELO3C034982.2	Melon (DHL92) v3.6.1	medmedB039
MELO3C034982.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034982.2	Bottle gourd (USVL1VR-Ls)	lsimedB094
MELO3C034982.2	Watermelon (Charleston Gray)	medwcgB094
MELO3C034982.2	Watermelon (Charleston Gray)	medwcgB104
MELO3C034982.2	Watermelon (97103) v1	medwmB109
MELO3C034982.2	Silver-seed gourd	carmedB0202
MELO3C034982.2	Silver-seed gourd	carmedB0356
MELO3C034982.2	Silver-seed gourd	carmedB0811
MELO3C034982.2	Cucumber (Chinese Long) v3	cucmedB421
MELO3C034982.2	Cucumber (Chinese Long) v3	cucmedB521
MELO3C034982.2	Watermelon (97103) v2	medwmbB090
MELO3C034982.2	Watermelon (97103) v2	medwmbB103
MELO3C034982.2	Wax gourd	medwgoB108
MELO3C034982.2	Wax gourd	medwgoB128