MELO3C034952.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034952.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	vacuolar cation/proton exchanger 3
Location	chr11 : 11018865 .. 11020071 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTACCGCAAGTGCAAGTTGCTTGATTGGTGTGGTACAGGAAACATAGTTGCTGAAGGGTGGATGGTCTACAAATGACCTAAAAGTTCTTGTTCATTATGTTTCCGTTGGTCCTCAAGCAGTAAGAGTTTGGATACACTTTCCAATAAGACATGATGCCTTTTGGTGGAGGCCAAATTCATAAATGACATACGTTGTAGATGCAATCGGCAGTACAATTGCGTGGCCATTAGACAAAAAATTGAGTACGTATATCTAGCTATCGATTATTTTATTTCTTTATTTCTTTATTTCTTTATTTCAATAACTTGAACTTTATTCCCATTGTAGGTTGATGTCGGGCTATATATGTATGCAATAGCTTGTCAGTAAACACAACCAAGCTAGAGTTATTTTGGATTTCTTATATCGACATATTTTGTAATTTATAAAGTGTATATTTTGTTTCATATCTCTAAGTTTTTTTACTGCTCATTGCAATTACTAGAAGAAATATGGCCTTTAATGTTGGTTGTAAAAAATGAAAACGGATCTTTAATGTCGCTTTTTAAAATGCAGATGTTTAATGTCGGTTTTAAACCGACATCAAAGATGAAGGATTAATGTTGGTTTTAAACCGTCATTAAAGATCTATTTTTTTCAAACCGACATTATAGATATATTAAACATAATAATTTTAAGTTTTTTGGAGTTTCATATATAAAAGAGGTTTCAAACCCTAAATCACCATCTCTCCTACCGCTTTCCATTTCTCTTGCCTTTTCTATTTCCCTTTCCCTTCCCCTTTCCTTCATCTGTCGCTTTCCATTTCTCTTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCTTTCCTTCATCTACCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCCTTCCCCTTTCCTTCATCTTCTTCAGCCGAAGGAAGACCCAGCGTCGAAACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCACCGCCTCGACCCTTCATCTGTCCAGAGCTAGCAGCATTGTGATGCTCTCTACTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTATTTGAAGCTAAGGTACGATGACTGCTCCTTTGAATATTTAATTTTATGTTTAATAGATCTAA

mRNA sequence

ATGCTTTACCGCAAGTGCAAGTTGCTTGATTGGTGTGGTACAGGAAACATAGTTGCTGAAGGGTGGATGCCGAAGGAAGACCCAGCGTCGAAACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCACCGCCTCGACCCTTCATCTGTCCAGAGCTAGCAGCATTGTGATGCTCTCTACTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTATTTGAAGCTAAGATCTAA

Coding sequence (CDS)

ATGCTTTACCGCAAGTGCAAGTTGCTTGATTGGTGTGGTACAGGAAACATAGTTGCTGAAGGGTGGATGCCGAAGGAAGACCCAGCGTCGAAACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCACCGCCTCGACCCTTCATCTGTCCAGAGCTAGCAGCATTGTGATGCTCTCTACTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTATTTGAAGCTAAGATCTAA

Protein sequence

MLYRKCKLLDWCGTGNIVAEGWMPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAKI

Homology

[Close]

BLAST of MELO3C034952.2 vs. NCBI nr
Match: XP_008449925.1 (PREDICTED: vacuolar cation/proton exchanger 3 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 42  GRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           G   S   +  ASTLHLSRASSIVMLS YIAYLVFQLWTHRQLFEA+
Sbjct: 213 GYAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAE 259

[Close]

BLAST of MELO3C034952.2 vs. NCBI nr
Match: NP_001267681.1 (vacuolar cation/proton exchanger 1-like [Cucumis sativus] >XP_011652900.1 PREDICTED: vacuolar cation/proton exchanger 1-like isoform X1 [Cucumis sativus] >AFQ99295.1 cation exchanger CAX3 [Cucumis sativus] >KGN54380.1 Vacuolar cation/proton exchanger 1a [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 42  GRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           G   +   +  ASTLHLSRASSIVML+ YIAYLVFQLWTHRQLFEA+
Sbjct: 213 GYAAASASTAAASTLHLSRASSIVMLTAYIAYLVFQLWTHRQLFEAE 259

[Close]

BLAST of MELO3C034952.2 vs. NCBI nr
Match: XP_022151531.1 (vacuolar cation/proton exchanger 3-like [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 42  GRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFE 87
           G   S   +  ASTLHLSRASSIVMLS YIAYLVFQLWTHRQLFE
Sbjct: 215 GYAASSAATAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFE 259

[Close]

BLAST of MELO3C034952.2 vs. NCBI nr
Match: PON51163.1 (Calcium/proton exchanger CAX [Parasponia andersonii])

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 33  LLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           LL +   +AG   + L ++  S+LHLSRASSIVML  Y+AYLVFQLWTHRQLFEA+
Sbjct: 206 LLPMLFRYAGASAADLSTVD-SSLHLSRASSIVMLIAYVAYLVFQLWTHRQLFEAE 260

[Close]

BLAST of MELO3C034952.2 vs. NCBI nr
Match: XP_023517389.1 (vacuolar cation/proton exchanger 3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 6.9e-07
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 53  ASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           ASTLHLSRASSIVML  YIAYLVFQLWTHRQ FEA+
Sbjct: 215 ASTLHLSRASSIVMLLAYIAYLVFQLWTHRQSFEAQ 250

[Close]

BLAST of MELO3C034952.2 vs. TAIR10
Match: AT3G51860.1 (cation exchanger 3)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 51  ITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           I   +L LSR SSIVML  YIAYL+FQLWTHRQLFEA+
Sbjct: 229 INKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQ 266

[Close]

BLAST of MELO3C034952.2 vs. TAIR10
Match: AT2G38170.3 (cation exchanger 1)

HSP 1 Score: 51.2 bits (121), Expect = 3.8e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 56  LHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           L +SR  SIVML +YIAYLVFQLWTHRQLF+A+
Sbjct: 234 LSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQ 266

[Close]

BLAST of MELO3C034952.2 vs. Swiss-Prot
Match: sp|Q93Z81|CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana OX=3702 GN=CAX3 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.7e-07
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 51  ITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           I   +L LSR SSIVML  YIAYL+FQLWTHRQLFEA+
Sbjct: 229 INKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQ 266

[Close]

BLAST of MELO3C034952.2 vs. Swiss-Prot
Match: sp|Q39253|CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana OX=3702 GN=CAX1 PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 6.8e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 56  LHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           L +SR  SIVML +YIAYLVFQLWTHRQLF+A+
Sbjct: 234 LSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQ 266

[Close]

BLAST of MELO3C034952.2 vs. Swiss-Prot
Match: sp|Q769E5|CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica OX=39947 GN=CAX1a PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 34  LAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFE 87
           L + +  A    S   +  A++L LSRA S VML++Y+AYL FQL THRQLFE
Sbjct: 205 LLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQLKTHRQLFE 257

[Close]

BLAST of MELO3C034952.2 vs. Swiss-Prot
Match: sp|Q5TKG3|CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica OX=39947 GN=CAX1b PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 54  STLHLSRASSIVMLSTYIAYLVFQLWTHRQLFE 87
           + LHLSRA SI+ML  Y+AYL FQL THRQLFE
Sbjct: 231 AALHLSRACSILMLIAYLAYLFFQLNTHRQLFE 263

[Close]

BLAST of MELO3C034952.2 vs. TrEMBL
Match: tr|A0A1S3BNT2|A0A1S3BNT2_CUCME (Vacuolar cation/proton exchanger OS=Cucumis melo OX=3656 GN=LOC103491652 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-09
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 42  GRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           G   S   +  ASTLHLSRASSIVMLS YIAYLVFQLWTHRQLFEA+
Sbjct: 213 GYAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAE 259

[Close]

BLAST of MELO3C034952.2 vs. TrEMBL
Match: tr|J7KJQ3|J7KJQ3_CUCSA (Vacuolar cation/proton exchanger OS=Cucumis sativus OX=3659 GN=CAX3 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.1e-08
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 42  GRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           G   +   +  ASTLHLSRASSIVML+ YIAYLVFQLWTHRQLFEA+
Sbjct: 213 GYAAASASTAAASTLHLSRASSIVMLTAYIAYLVFQLWTHRQLFEAE 259

[Close]

BLAST of MELO3C034952.2 vs. TrEMBL
Match: tr|A0A2P5BQT4|A0A2P5BQT4_PARAD (Vacuolar cation/proton exchanger OS=Parasponia andersonii OX=3476 GN=PanWU01x14_218720 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 33  LLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           LL +   +AG   + L ++  S+LHLSRASSIVML  Y+AYLVFQLWTHRQLFEA+
Sbjct: 206 LLPMLFRYAGASAADLSTVD-SSLHLSRASSIVMLIAYVAYLVFQLWTHRQLFEAE 260

[Close]

BLAST of MELO3C034952.2 vs. TrEMBL
Match: tr|A0A2P5F4D7|A0A2P5F4D7_9ROSA (Vacuolar cation/proton exchanger OS=Trema orientalis OX=63057 GN=TorRG33x02_115080 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 33  LLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           LL +   +AG   + L S   STL LSRASSIVML  Y+AYLVFQLWTHRQLFEA+
Sbjct: 206 LLPMLFRYAGASAAAL-STADSTLQLSRASSIVMLIAYVAYLVFQLWTHRQLFEAE 260

[Close]

BLAST of MELO3C034952.2 vs. TrEMBL
Match: tr|A0A2P5EXB6|A0A2P5EXB6_9ROSA (Sodium/calcium exchanger membrane region OS=Trema orientalis OX=63057 GN=TorRG33x02_140290 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 54 STLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
          STL LSRASSIVML  Y+AYLVFQLWTHRQLFEA+
Sbjct: 3  STLQLSRASSIVMLIAYVAYLVFQLWTHRQLFEAE 37

The following BLAST results are available for this feature:

BLAST of MELO3C034952.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449925.1	1.3e-08	76.60	PREDICTED: vacuolar cation/proton exchanger 3 [Cucumis melo]	[more]
NP_001267681.1	6.3e-08	72.34	vacuolar cation/proton exchanger 1-like [Cucumis sativus] >XP_011652900.1 PREDIC...	[more]
XP_022151531.1	6.3e-08	77.78	vacuolar cation/proton exchanger 3-like [Momordica charantia]	[more]
PON51163.1	2.4e-07	62.50	Calcium/proton exchanger CAX [Parasponia andersonii]	[more]
XP_023517389.1	6.9e-07	88.89	vacuolar cation/proton exchanger 3-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C034952.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51860.1	2.6e-08	73.68	cation exchanger 3	[more]
AT2G38170.3	3.8e-07	75.76	cation exchanger 1	[more]

BLAST of MELO3C034952.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93Z81\|CAX3_ARATH	4.7e-07	73.68	Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana OX=3702 GN=CAX3 PE=1 ...	[more]
sp\|Q39253\|CAX1_ARATH	6.8e-06	75.76	Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana OX=3702 GN=CAX1 PE=1 ...	[more]
sp\|Q769E5\|CAX1A_ORYSJ	1.3e-04	50.94	Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
sp\|Q5TKG3\|CAX1B_ORYSJ	1.7e-04	72.73	Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of MELO3C034952.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNT2\|A0A1S3BNT2_CUCME	8.3e-09	76.60	Vacuolar cation/proton exchanger OS=Cucumis melo OX=3656 GN=LOC103491652 PE=3 SV...	[more]
tr\|J7KJQ3\|J7KJQ3_CUCSA	4.1e-08	72.34	Vacuolar cation/proton exchanger OS=Cucumis sativus OX=3659 GN=CAX3 PE=2 SV=1	[more]
tr\|A0A2P5BQT4\|A0A2P5BQT4_PARAD	1.6e-07	62.50	Vacuolar cation/proton exchanger OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]
tr\|A0A2P5F4D7\|A0A2P5F4D7_9ROSA	7.8e-07	64.29	Vacuolar cation/proton exchanger OS=Trema orientalis OX=63057 GN=TorRG33x02_1150...	[more]
tr\|A0A2P5EXB6\|A0A2P5EXB6_9ROSA	3.0e-06	85.71	Sodium/calcium exchanger membrane region OS=Trema orientalis OX=63057 GN=TorRG33...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015369	calcium:proton antiporter activity
molecular_function	GO:0008324	cation transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034952.2.1	MELO3C034952.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31503	FAMILY NOT NAMED	coord: 50..88
None	No IPR available	PANTHER	PTHR31503:SF33	VACUOLAR CATION/PROTON EXCHANGER 1-RELATED	coord: 50..88

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034952.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C034952.2	Cucumber (Gy14) v2	cgybmedB453
MELO3C034952.2	Cucumber (Gy14) v1	cgymedB071
MELO3C034952.2	Cucurbita maxima (Rimu)	cmamedB579
MELO3C034952.2	Cucurbita maxima (Rimu)	cmamedB612
MELO3C034952.2	Cucurbita maxima (Rimu)	cmamedB880
MELO3C034952.2	Cucurbita moschata (Rifu)	cmomedB513
MELO3C034952.2	Cucurbita moschata (Rifu)	cmomedB558
MELO3C034952.2	Cucurbita moschata (Rifu)	cmomedB601
MELO3C034952.2	Cucurbita pepo (Zucchini)	cpemedB302
MELO3C034952.2	Cucurbita pepo (Zucchini)	cpemedB797
MELO3C034952.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C034952.2	Wild cucumber (PI 183967)	cpimedB508
MELO3C034952.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C034952.2	Melon (DHL92) v3.6.1	medmedB040
MELO3C034952.2	Melon (DHL92) v3.6.1	medmedB058
MELO3C034952.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034952.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C034952.2	Watermelon (97103) v1	medwmB119
MELO3C034952.2	Silver-seed gourd	carmedB0030
MELO3C034952.2	Silver-seed gourd	carmedB0348
MELO3C034952.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C034952.2	Cucumber (Chinese Long) v3	cucmedB449
MELO3C034952.2	Cucumber (Chinese Long) v3	cucmedB523
MELO3C034952.2	Watermelon (97103) v2	medwmbB087
MELO3C034952.2	Watermelon (97103) v2	medwmbB090
MELO3C034952.2	Wax gourd	medwgoB108
MELO3C034952.2	Wax gourd	medwgoB128
MELO3C034952.2	Wax gourd	medwgoB143