MELO3C034870.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034870.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptiontRNA pseudouridine synthase
Locationchr11 : 24973181 .. 24973396 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACACCGATGTATATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGATTGTTAGAAATATCTATAGAGAAGTTTGTAGATGAGATGAAAGTTCAGATGCTGAAGGATAAATGCTTACCATTAGAAGGATGGGTTGTGGTTGCTAGGCGCACTGACAAAGGGTGACAGCTCTACAACAAGTTTGCACATTTTGTATGTTAGCTTCCTAA

mRNA sequence

ATGGAAAACACCGATGTATATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGATTGTTAGAAATATCTATAGAGAAGTTTGTAGATGAGATGAAAGTTCAGATGCTGAAGGATAAATGCTTACCATTAGAAGGATGGGTTGTGGTTGCTAGGCGCACTGACAAAGGGTGACAGCTCTACAACAAGTTTGCACATTTTGTATGTTAGCTTCCTAA

Coding sequence (CDS)

ATGTATATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGATTGTTAGAAATATCTATAGAGAAGTTTGTAGATGAGATGAAAGTTCAGATGCTGAAGGATAAATGCTTACCATTAGAAGGATGGGTTGTGGTTGCTAGGCGCACTGACAAAGGGTGA

Protein sequence

MYIGGLCLLASFGRLLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG
Homology
[Close]
BLAST of MELO3C034870.2 vs. NCBI nr
Match: XP_008453520.1 (PREDICTED: tRNA pseudouridine synthase A [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+E S+ KFVDE K QMLKDKCLPLEG  VVA RTDKG
Sbjct: 146 LVERSLGKFVDEKKAQMLKDKCLPLEGCAVVAGRTDKG 183

[Close]
BLAST of MELO3C034870.2 vs. NCBI nr
Match: XP_004137363.1 (PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus] >KGN63901.1 hypothetical protein Csa_1G025830 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-06
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+E S+ KFVDE K QMLKDKCLPLEG  +VA RTDKG
Sbjct: 146 LVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKG 183

[Close]
BLAST of MELO3C034870.2 vs. NCBI nr
Match: XP_015881667.1 (uncharacterized protein LOC107417573 [Ziziphus jujuba])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-05
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 15 LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
          L+E S+ KFVDE K Q+LKDKCLPLEG  VVA RTDKG
Sbjct: 5  LVEKSLGKFVDEKKAQVLKDKCLPLEGCAVVAGRTDKG 42

[Close]
BLAST of MELO3C034870.2 vs. NCBI nr
Match: XP_015881730.1 (uncharacterized protein LOC107417627 [Ziziphus jujuba])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-05
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+E S+ KFVDE K Q+LKDKCLPLEG  VVA RTDKG
Sbjct: 156 LVEKSLGKFVDEKKAQVLKDKCLPLEGCAVVAGRTDKG 193

[Close]
BLAST of MELO3C034870.2 vs. NCBI nr
Match: POE76938.1 (trna pseudouridine synthase a [Quercus suber])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-05
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+EIS+ KFVDE KV++LKDK LPLEG VVVA RTDKG
Sbjct: 124 LIEISLGKFVDENKVKLLKDKGLPLEGCVVVAGRTDKG 161

[Close]
BLAST of MELO3C034870.2 vs. TAIR10
Match: AT5G35400.2 (Pseudouridine synthase family protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.4e-07
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           ++E S+  FVDE K Q+LK KC PLEG V+VA RTDKG
Sbjct: 121 VVEKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKG 158

[Close]
BLAST of MELO3C034870.2 vs. TrEMBL
Match: tr|A0A1S3BWI6|A0A1S3BWI6_CUCME (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+E S+ KFVDE K QMLKDKCLPLEG  VVA RTDKG
Sbjct: 146 LVERSLGKFVDEKKAQMLKDKCLPLEGCAVVAGRTDKG 183

[Close]
BLAST of MELO3C034870.2 vs. TrEMBL
Match: tr|A0A0A0LV59|A0A0A0LV59_CUCSA (tRNA pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_1G025830 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-06
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+E S+ KFVDE K QMLKDKCLPLEG  +VA RTDKG
Sbjct: 146 LVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKG 183

[Close]
BLAST of MELO3C034870.2 vs. TrEMBL
Match: tr|A0A2P4J836|A0A2P4J836_QUESU (tRNA pseudouridine synthase OS=Quercus suber OX=58331 GN=CFP56_34218 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.6e-06
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+EIS+ KFVDE KV++LKDK LPLEG VVVA RTDKG
Sbjct: 128 LIEISLGKFVDENKVKLLKDKGLPLEGCVVVAGRTDKG 165

[Close]
BLAST of MELO3C034870.2 vs. TrEMBL
Match: tr|A0A2P4J829|A0A2P4J829_QUESU (tRNA pseudouridine synthase OS=Quercus suber OX=58331 GN=CFP56_34218 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.6e-06
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+EIS+ KFVDE KV++LKDK LPLEG VVVA RTDKG
Sbjct: 96  LIEISLGKFVDENKVKLLKDKGLPLEGCVVVAGRTDKG 133

[Close]
BLAST of MELO3C034870.2 vs. TrEMBL
Match: tr|A0A2P4J872|A0A2P4J872_QUESU (tRNA pseudouridine synthase OS=Quercus suber OX=58331 GN=CFP56_34218 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.6e-06
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 15  LLEISIEKFVDEMKVQMLKDKCLPLEGWVVVARRTDKG 53
           L+EIS+ KFVDE KV++LKDK LPLEG VVVA RTDKG
Sbjct: 124 LIEISLGKFVDENKVKLLKDKGLPLEGCVVVAGRTDKG 161

The following BLAST results are available for this feature:
BLAST of MELO3C034870.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453520.14.5e-0676.32PREDICTED: tRNA pseudouridine synthase A [Cucumis melo][more]
XP_004137363.19.9e-0673.68PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus] >KGN63901.1 hy... [more]
XP_015881667.11.3e-0573.68uncharacterized protein LOC107417573 [Ziziphus jujuba][more]
XP_015881730.11.3e-0573.68uncharacterized protein LOC107417627 [Ziziphus jujuba][more]
POE76938.11.3e-0576.32trna pseudouridine synthase a [Quercus suber][more]
BLAST of MELO3C034870.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35400.28.4e-0763.16Pseudouridine synthase family protein[more]
BLAST of MELO3C034870.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034870.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BWI6|A0A1S3BWI6_CUCME3.0e-0676.32tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1[more]
tr|A0A0A0LV59|A0A0A0LV59_CUCSA6.6e-0673.68tRNA pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_1G025830 PE=3 SV=1[more]
tr|A0A2P4J836|A0A2P4J836_QUESU8.6e-0676.32tRNA pseudouridine synthase OS=Quercus suber OX=58331 GN=CFP56_34218 PE=3 SV=1[more]
tr|A0A2P4J829|A0A2P4J829_QUESU8.6e-0676.32tRNA pseudouridine synthase OS=Quercus suber OX=58331 GN=CFP56_34218 PE=3 SV=1[more]
tr|A0A2P4J872|A0A2P4J872_QUESU8.6e-0676.32tRNA pseudouridine synthase OS=Quercus suber OX=58331 GN=CFP56_34218 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
biological_process GO:0008033 tRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0016853 isomerase activity
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034870.2.1MELO3C034870.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034870.2Cucumber (Chinese Long) v3cucmedB437
MELO3C034870.2Cucumber (Chinese Long) v3cucmedB516
MELO3C034870.2Watermelon (97103) v2medwmbB086
MELO3C034870.2Watermelon (97103) v2medwmbB120
MELO3C034870.2Wax gourdmedwgoB113
MELO3C034870.2Wax gourdmedwgoB129
MELO3C034870.2Cucumber (Gy14) v2cgybmedB383
MELO3C034870.2Cucumber (Gy14) v2cgybmedB448
MELO3C034870.2Cucumber (Gy14) v1cgymedB173
MELO3C034870.2Cucumber (Gy14) v1cgymedB402
MELO3C034870.2Cucurbita maxima (Rimu)cmamedB091
MELO3C034870.2Cucurbita maxima (Rimu)cmamedB522
MELO3C034870.2Cucurbita maxima (Rimu)cmamedB569
MELO3C034870.2Cucurbita maxima (Rimu)cmamedB624
MELO3C034870.2Cucurbita moschata (Rifu)cmomedB084
MELO3C034870.2Cucurbita moschata (Rifu)cmomedB612
MELO3C034870.2Cucurbita moschata (Rifu)cmomedB511
MELO3C034870.2Cucurbita moschata (Rifu)cmomedB557
MELO3C034870.2Cucurbita pepo (Zucchini)cpemedB252
MELO3C034870.2Cucurbita pepo (Zucchini)cpemedB301
MELO3C034870.2Cucurbita pepo (Zucchini)cpemedB707
MELO3C034870.2Cucurbita pepo (Zucchini)cpemedB785
MELO3C034870.2Wild cucumber (PI 183967)cpimedB433
MELO3C034870.2Wild cucumber (PI 183967)cpimedB502
MELO3C034870.2Cucumber (Chinese Long) v2cumedB424
MELO3C034870.2Cucumber (Chinese Long) v2cumedB492
MELO3C034870.2Melon (DHL92) v3.6.1medmedB042
MELO3C034870.2Bottle gourd (USVL1VR-Ls)lsimedB057
MELO3C034870.2Bottle gourd (USVL1VR-Ls)lsimedB092
MELO3C034870.2Watermelon (Charleston Gray)medwcgB073
MELO3C034870.2Watermelon (Charleston Gray)medwcgB087
MELO3C034870.2Watermelon (97103) v1medwmB081
MELO3C034870.2Watermelon (97103) v1medwmB106
MELO3C034870.2Silver-seed gourdcarmedB0028
MELO3C034870.2Silver-seed gourdcarmedB0033
MELO3C034870.2Silver-seed gourdcarmedB0347
MELO3C034870.2Silver-seed gourdcarmedB0395
MELO3C034870.2Silver-seed gourdcarmedB0541