MELO3C034862.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034862.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionzinc finger BED domain-containing protein RICESLEEPER 2-like
Locationchr11 : 8067916 .. 8068968 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGTGATCGATTTGAGGTTCTTGGTCAAATGGCTAGAGATATTTTGGCTATTCCAGTTTCTATTGTAGTGTCTGAGTCGACTTTTAGTACTGGAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATCCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGTATTTTCAAATCTTTACATGATATCTTTTGTAGTTGTAATGTGTAACTTTAGTGAAATCTTAAATTATTTAGTAAATTCTTCATATTGATTATGTAGGATTTCGGGTGGTTATGGAGAATGAAAAGGAGCCTGAAGACCTTACAGATTTTGATAAGTTGTCAATTACCGATTATTAACTAATTCTGATCCAAGACTTGTAATATTTCTATTGACTAGATTATCATAGTGTTTTTGTTTCATACTTTGGTTGTATTTGTGACTATTAATAGTAATGTGGTGAACTGAATTGAACTTGGATGTTTCTAACCCTATAATATTTGATATATATTTCATTTTCGTAGTATGTTTAGATTCTTATTTTTATGTTGTTTATTTTATTAATTTGTGTAATACCTATGAACTAAGCATTGAAATTTATAGAACTTGATTTTATTTTTTAATCACAATTATATGATATTAAGACAATATAGAATATATATCGTAGACTTTTTTATTGAAATTAAAAAGTGAAATAAAACATAATAACGTCATTCTTAGTTTTTAAAATCGTTTGTTTATCAAAAAGAAAGCAAGAAACATAGAAAAGGAAGGAGGAGGAGGAGAAGAAACAGGAAAGAAAGAAAGAAGGAAAGGAAAAAAAAAGAAAAAGAAAAACCGACCGACCCGAACCGACCCGACCGCCAGTTGGACCGGCCGGTTTGGTTAGAACCGGCGGTCGAGGCCGATTTTCATACTTCCGTGCCGATTTGTAGTCGGTTCGGGGCGGTTTGGTCGGAAAACCGACCCCGACCGCCCGATGCTCACCCCTAG

mRNA sequence

ATGAACAGTGATCGATTTGAGGTTCTTGGTCAAATGGCTAGAGATATTTTGGCTATTCCAGTTTCTATTGTAGTGTCTGAGTCGACTTTTAGTACTGGAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATCCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGAAAGCAAGAAACATAGAAAAGGAAGGAGGAGGAGGAGAAGAAACAGGAAAGAAAGAAAGAAGGAAAGGAAAAAAAAAGAAAAAGAAAAACCGACCGACCCGAACCGACCCGACCGCCAGTTGGACCGGCCGGTTTGGTTAGAACCGGCGGTCGAGGCCGATTTTCATACTTCCGTGCCGATTTGTAGTCGGTTCGGGGCGGTTTGGTCGGAAAACCGACCCCGACCGCCCGATGCTCACCCCTAG

Coding sequence (CDS)

ATGAACAGTGATCGATTTGAGGTTCTTGGTCAAATGGCTAGAGATATTTTGGCTATTCCAGTTTCTATTGTAGTGTCTGAGTCGACTTTTAGTACTGGAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATCCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGAAAGCAAGAAACATAGAAAAGGAAGGAGGAGGAGGAGAAGAAACAGGAAAGAAAGAAAGAAGGAAAGGAAAAAAAAAGAAAAAGAAAAACCGACCGACCCGAACCGACCCGACCGCCAGTTGGACCGGCCGGTTTGGTTAGAACCGGCGGTCGAGGCCGATTTTCATACTTCCGTGCCGATTTGTAGTCGGTTCGGGGCGGTTTGGTCGGAAAACCGACCCCGACCGCCCGATGCTCACCCCTAG

Protein sequence

MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHELEEASKFEEESKKHRKGRRRRRRNRKERKKERKKKEKEKPTDPNRPDRQLDRPVWLEPAVEADFHTSVPICSRFGAVWSENRPRPPDAHP
Homology
[Close]
BLAST of MELO3C034862.2 vs. NCBI nr
Match: ADN33918.1 (transposase [Cucumis melo subsp. melo])

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           MNSDRFEVLG MARDILAI VS V SESTFSTGGRVVDSS CSLAPKTVEALICTQNWLN
Sbjct: 141 MNSDRFEVLGHMARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLN 200

Query: 61  SDPIHLQFQHELEEASKFEE 81
            DPIHLQFQHEL+EASKFE+
Sbjct: 201 FDPIHLQFQHELKEASKFEK 220

[Close]
BLAST of MELO3C034862.2 vs. NCBI nr
Match: XP_016901224.1 (PREDICTED: uncharacterized protein LOC107991203 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           MNSDRFEVLG MARDILAI VS V SESTFSTGGRVVDSS CSLAPKTVEALICTQNWLN
Sbjct: 116 MNSDRFEVLGHMARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLN 175

Query: 61  SDPIHLQFQHELEEASKFEE 81
            DPIHLQFQHEL+EASKFE+
Sbjct: 176 FDPIHLQFQHELKEASKFEK 195

[Close]
BLAST of MELO3C034862.2 vs. NCBI nr
Match: XP_016901938.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           +NSDRFEVLG+MARDILAIP S V SES F+TGGRVVDSS CSLAPKTVE LICTQNWLN
Sbjct: 232 VNSDRFEVLGRMARDILAIPDSTVASESAFNTGGRVVDSSCCSLAPKTVETLICTQNWLN 291

Query: 61  SDPIHLQFQHELEEASKFEE 81
           SDPI LQ Q ELE+ASKF+E
Sbjct: 292 SDPIDLQIQDELEKASKFKE 311

[Close]
BLAST of MELO3C034862.2 vs. NCBI nr
Match: XP_011652627.1 (PREDICTED: uncharacterized protein LOC105435038 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 2   NSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLNS 61
           N  RFEVL +++RDILAIPVS V SESTF+ GG VV+S+RCS+APK +EALICT NWLN+
Sbjct: 116 NEHRFEVLSRISRDILAIPVSTVSSESTFNIGGCVVNSNRCSVAPKMMEALICTHNWLNT 175

Query: 62  DPIHLQFQH-ELEEASKFEE 81
           +PI+L+  + +LEE  +FEE
Sbjct: 176 NPINLEIHNQDLEEDLRFEE 195

[Close]
BLAST of MELO3C034862.2 vs. NCBI nr
Match: XP_016903504.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 2   NSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLNS 61
           N  RFEVL +++RDILAIPVS + SESTF+ GG VV+S+RCS+APK +EALICT+NWLNS
Sbjct: 263 NEYRFEVLSRISRDILAIPVSTISSESTFNIGGCVVNSNRCSVAPKMMEALICTRNWLNS 322

Query: 62  DPIHLQFQH-ELEEASKFEE 81
            PI+L+  + +LEE  +FEE
Sbjct: 323 SPINLEIHNQDLEEDLRFEE 342

[Close]
BLAST of MELO3C034862.2 vs. TAIR10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-08
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 2   NSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWL 60
           N  ++  L +MARDIL+IPVS    +  F    R +D  + SL P+TVEALIC + WL
Sbjct: 617 NKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674

[Close]
BLAST of MELO3C034862.2 vs. TAIR10
Match: AT1G18560.1 (BED zinc finger ;hAT family dimerisation domain)

HSP 1 Score: 41.2 bits (95), Expect = 7.1e-04
Identity = 17/61 (27.87%), Postives = 32/61 (52.46%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           +NS R+  L  MARD LA+  +    E  F   G  +D  +  +   + +++IC ++W+ 
Sbjct: 591 VNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIE 650

Query: 61  S 62
           +
Sbjct: 651 A 651

[Close]
BLAST of MELO3C034862.2 vs. Swiss-Prot
Match: sp|P08770|TRA1_MAIZE (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-10
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 6   FEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWL 60
           + +L Q+ARD+LAI VS V SES FS GGRVVD  R  L  + VEALICT++W+
Sbjct: 698 YPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751

[Close]
BLAST of MELO3C034862.2 vs. Swiss-Prot
Match: sp|P03010|TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-10
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 6   FEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWL 60
           + +L Q+ARD+LAI VS V SES FS GGRVVD  R  L  + VEALICT++W+
Sbjct: 667 YPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720

[Close]
BLAST of MELO3C034862.2 vs. Swiss-Prot
Match: sp|Q75HY5|RSLE3_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-09
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTF----STGGRVVDSSRCSLAPKTVEALICTQ 60
           +N+ +F  L +MARD+LAIP+S+V S S+     +TG +++D  R SL P+TVEAL C +
Sbjct: 671 LNTIKFPTLSKMARDVLAIPMSMVSSGSSIFSATATGSQMLDDYRSSLRPETVEALFCAK 730

Query: 61  NWLNSDP 64
           +WL   P
Sbjct: 731 DWLQYPP 737

[Close]
BLAST of MELO3C034862.2 vs. Swiss-Prot
Match: sp|Q6AVI0|RSLE2_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVS-ESTFS--TGGRVVDSSRCSLAPKTVEALICTQN 60
           +N+ +F  L +MARDILAIP+S+V S  S FS  TG R++D  R SL P+ VEAL+C ++
Sbjct: 641 LNTLKFPTLSRMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKD 700

Query: 61  WLNSDP 64
           WL   P
Sbjct: 701 WLQYLP 706

[Close]
BLAST of MELO3C034862.2 vs. Swiss-Prot
Match: sp|B9FJG3|RSLE1_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVS-ESTFS--TGGRVVDSSRCSLAPKTVEALICTQN 60
           +N+ ++  L +MARDILAIP+S+V S  S FS  TG R++D  R S  P+ VEAL+C ++
Sbjct: 641 LNTLKYPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKD 700

Query: 61  WLNSDP 64
           WL   P
Sbjct: 701 WLQYLP 706

[Close]
BLAST of MELO3C034862.2 vs. TrEMBL
Match: tr|A0A1S4DZ17|A0A1S4DZ17_CUCME (uncharacterized protein LOC107991203 OS=Cucumis melo OX=3656 GN=LOC107991203 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           MNSDRFEVLG MARDILAI VS V SESTFSTGGRVVDSS CSLAPKTVEALICTQNWLN
Sbjct: 116 MNSDRFEVLGHMARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLN 175

Query: 61  SDPIHLQFQHELEEASKFEE 81
            DPIHLQFQHEL+EASKFE+
Sbjct: 176 FDPIHLQFQHELKEASKFEK 195

[Close]
BLAST of MELO3C034862.2 vs. TrEMBL
Match: tr|E5GBS6|E5GBS6_CUCME (Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           MNSDRFEVLG MARDILAI VS V SESTFSTGGRVVDSS CSLAPKTVEALICTQNWLN
Sbjct: 141 MNSDRFEVLGHMARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLN 200

Query: 61  SDPIHLQFQHELEEASKFEE 81
            DPIHLQFQHEL+EASKFE+
Sbjct: 201 FDPIHLQFQHELKEASKFEK 220

[Close]
BLAST of MELO3C034862.2 vs. TrEMBL
Match: tr|A0A1S4E139|A0A1S4E139_CUCME (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=3656 GN=LOC107991479 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           +NSDRFEVLG+MARDILAIP S V SES F+TGGRVVDSS CSLAPKTVE LICTQNWLN
Sbjct: 232 VNSDRFEVLGRMARDILAIPDSTVASESAFNTGGRVVDSSCCSLAPKTVETLICTQNWLN 291

Query: 61  SDPIHLQFQHELEEASKFEE 81
           SDPI LQ Q ELE+ASKF+E
Sbjct: 292 SDPIDLQIQDELEKASKFKE 311

[Close]
BLAST of MELO3C034862.2 vs. TrEMBL
Match: tr|A0A1S4E5K1|A0A1S4E5K1_CUCME (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=3656 GN=LOC107992219 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.4e-19
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 2   NSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLNS 61
           N  RFEVL +++RDILAIPVS + SESTF+ GG VV+S+RCS+APK +EALICT+NWLNS
Sbjct: 263 NEYRFEVLSRISRDILAIPVSTISSESTFNIGGCVVNSNRCSVAPKMMEALICTRNWLNS 322

Query: 62  DPIHLQFQH-ELEEASKFEE 81
            PI+L+  + +LEE  +FEE
Sbjct: 323 SPINLEIHNQDLEEDLRFEE 342

[Close]
BLAST of MELO3C034862.2 vs. TrEMBL
Match: tr|A0A2K3JUQ5|A0A2K3JUQ5_TRIPR (Transposon protein OS=Trifolium pratense OX=57577 GN=L195_g050579 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.2e-17
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 1   MNSDRFEVLGQMARDILAIPVSIVVSESTFSTGGRVVDSSRCSLAPKTVEALICTQNWLN 60
           +NS ++ +LGQMARDILAIP+S V SES FSTGGRV+++ R SL+PKTVEALICTQNW  
Sbjct: 147 VNSTKYPILGQMARDILAIPLSTVASESAFSTGGRVLNNYRSSLSPKTVEALICTQNWCR 206

Query: 61  SDPIHLQFQHELEEASKFE 80
           S  + +  +  +EE    E
Sbjct: 207 SSQVSVDIEELVEELEHME 225

The following BLAST results are available for this feature:
BLAST of MELO3C034862.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33918.11.9e-3190.00transposase [Cucumis melo subsp. melo][more]
XP_016901224.11.9e-3190.00PREDICTED: uncharacterized protein LOC107991203 [Cucumis melo][more]
XP_016901938.12.2e-2782.50PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis... [more]
XP_011652627.11.4e-1863.75PREDICTED: uncharacterized protein LOC105435038 [Cucumis sativus][more]
XP_016903504.11.4e-1863.75PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis... [more]
BLAST of MELO3C034862.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G42170.12.8e-0846.55BED zinc finger ;hAT family dimerisation domain[more]
AT1G18560.17.1e-0427.87BED zinc finger ;hAT family dimerisation domain[more]
BLAST of MELO3C034862.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P08770|TRA1_MAIZE8.2e-1059.26Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2[more]
sp|P03010|TRAC9_MAIZE8.2e-1059.26Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1[more]
sp|Q75HY5|RSLE3_ORYSJ4.1e-0946.27Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j... [more]
sp|Q6AVI0|RSLE2_ORYSJ1.6e-0851.52Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j... [more]
sp|B9FJG3|RSLE1_ORYSJ1.7e-0748.48Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j... [more]
BLAST of MELO3C034862.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZ17|A0A1S4DZ17_CUCME1.3e-3190.00uncharacterized protein LOC107991203 OS=Cucumis melo OX=3656 GN=LOC107991203 PE=... [more]
tr|E5GBS6|E5GBS6_CUCME1.3e-3190.00Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E139|A0A1S4E139_CUCME1.5e-2782.50zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=... [more]
tr|A0A1S4E5K1|A0A1S4E5K1_CUCME9.4e-1963.75zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=... [more]
tr|A0A2K3JUQ5|A0A2K3JUQ5_TRIPR5.2e-1758.23Transposon protein OS=Trifolium pratense OX=57577 GN=L195_g050579 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR008906HATC_C_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034862.2.1MELO3C034862.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..104
NoneNo IPR availablePANTHERPTHR23272BED FINGER-RELATEDcoord: 1..62
NoneNo IPR availablePANTHERPTHR23272:SF54SUBFAMILY NOT NAMEDcoord: 1..62
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 2..59
e-value: 4.5E-19
score: 67.9
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 2..62

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034862.2Silver-seed gourdcarmedB0941
MELO3C034862.2Cucumber (Chinese Long) v3cucmedB096
MELO3C034862.2Watermelon (97103) v2medwmbB087
MELO3C034862.2Wax gourdmedwgoB128
MELO3C034862.2Cucumber (Gy14) v2cgybmedB080
MELO3C034862.2Cucumber (Gy14) v1cgymedB071
MELO3C034862.2Cucurbita maxima (Rimu)cmamedB573
MELO3C034862.2Cucurbita maxima (Rimu)cmamedB616
MELO3C034862.2Cucurbita moschata (Rifu)cmomedB561
MELO3C034862.2Cucurbita moschata (Rifu)cmomedB605
MELO3C034862.2Cucurbita pepo (Zucchini)cpemedB306
MELO3C034862.2Wild cucumber (PI 183967)cpimedB088
MELO3C034862.2Cucumber (Chinese Long) v2cumedB088
MELO3C034862.2Bottle gourd (USVL1VR-Ls)lsimedB054
MELO3C034862.2Watermelon (Charleston Gray)medwcgB088
MELO3C034862.2Watermelon (97103) v1medwmB120